RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 CPSF1Q10570 1443 aaKnown RBP18.37■□□□□ 0.53
CPSF1-204ENST00000529288 NBPF14Q5TI25 921 aa18.35■□□□□ 0.53
CPSF1-204ENST00000529288 SBNO2Q9Y2G9 1366 aa18.34■□□□□ 0.53
CPSF1-204ENST00000529288 TERF2IPQ9NYB0 399 aa18.34■□□□□ 0.53
CPSF1-204ENST00000529288 TNS1Q9HBL0 1735 aaKnown RBP18.33■□□□□ 0.52
CPSF1-204ENST00000529288 ST20-MTHFSA0A0A6YYL1 179 aa18.33■□□□□ 0.52
CPSF1-204ENST00000529288 C11orf95C9JLR9 678 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-204ENST00000529288 CARD10Q9BWT7 1032 aa18.33■□□□□ 0.52
CPSF1-204ENST00000529288 CDCA7Q9BWT1 371 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-204ENST00000529288 OVOS2A0A0G2JMS6 1433 aa18.32■□□□□ 0.52
CPSF1-204ENST00000529288 OVOS2A0A0J9YW53 1432 aa18.32■□□□□ 0.52
CPSF1-204ENST00000529288 OVOS2Q6IE36 1432 aa18.32■□□□□ 0.52
CPSF1-204ENST00000529288 PARD3Q8TEW0 1356 aa18.31■□□□□ 0.52
CPSF1-204ENST00000529288 EXOC5O00471 708 aa18.31■□□□□ 0.52
CPSF1-204ENST00000529288 MARCH10Q8NA82 808 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-204ENST00000529288 NLRP2Q9NX02 1062 aa18.31■□□□□ 0.52
CPSF1-204ENST00000529288 AKAP12Q02952 1782 aa18.3■□□□□ 0.52
CPSF1-204ENST00000529288 PTF1AQ7RTS3 328 aa18.29■□□□□ 0.52
CPSF1-204ENST00000529288 USP31Q70CQ4 1352 aa18.29■□□□□ 0.52
CPSF1-204ENST00000529288 CD163L1Q9NR16 1453 aa18.28■□□□□ 0.52
CPSF1-204ENST00000529288 COL18A1P39060 1754 aa18.28■□□□□ 0.52
CPSF1-204ENST00000529288 A0A1W2PP64 1363 aa18.28■□□□□ 0.52
CPSF1-204ENST00000529288 NFAT5O94916 1531 aa18.28■□□□□ 0.52
CPSF1-204ENST00000529288 PARP4Q9UKK3 1724 aaKnown RBP18.27■□□□□ 0.52
CPSF1-204ENST00000529288 ANKRD24Q8TF21 1146 aa18.27■□□□□ 0.52
CPSF1-204ENST00000529288 LTV1Q96GA3 475 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-204ENST00000529288 BCL11BQ9C0K0 894 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-204ENST00000529288 EDC4Q6P2E9 1401 aaKnown RBP18.26■□□□□ 0.51
CPSF1-204ENST00000529288 PUS7Q96PZ0 661 aaKnown RBP18.26■□□□□ 0.51
CPSF1-204ENST00000529288 TESK2Q96S53 571 aa18.26■□□□□ 0.51
CPSF1-204ENST00000529288 CCDC7Q96M83 1385 aa18.26■□□□□ 0.51
CPSF1-204ENST00000529288 LRRC37A3O60309 1634 aa18.24■□□□□ 0.51
CPSF1-204ENST00000529288 LRP5O75197 1615 aa18.24■□□□□ 0.51
CPSF1-204ENST00000529288 MON2Q7Z3U7 1717 aa18.24■□□□□ 0.51
CPSF1-204ENST00000529288 ERBB3P21860 1342 aa18.23■□□□□ 0.51
CPSF1-204ENST00000529288 PLSCR1O15162 318 aa18.23■□□□□ 0.51
CPSF1-204ENST00000529288 SLC24A1O60721 1099 aa18.23■□□□□ 0.51
CPSF1-204ENST00000529288 ACSBG1Q96GR2 724 aa18.23■□□□□ 0.51
CPSF1-204ENST00000529288 COG3Q96JB2 828 aa18.23■□□□□ 0.51
CPSF1-204ENST00000529288 IL2RBP14784 551 aa18.22■□□□□ 0.51
CPSF1-204ENST00000529288 TMF1P82094 1093 aa18.22■□□□□ 0.51
CPSF1-204ENST00000529288 RGPD5Q99666 1765 aa18.22■□□□□ 0.51
CPSF1-204ENST00000529288 FBLN1P23142 703 aa18.21■□□□□ 0.51
CPSF1-204ENST00000529288 PCGF6Q9BYE7 350 aa18.21■□□□□ 0.51
CPSF1-204ENST00000529288 PPP1R1BQ9UD71 204 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-204ENST00000529288 KCNQ2O43526 872 aa18.2■□□□□ 0.5
CPSF1-204ENST00000529288 AMPHP49418 695 aa18.2■□□□□ 0.5
CPSF1-204ENST00000529288 IP6K1Q92551 441 aa18.2■□□□□ 0.5
CPSF1-204ENST00000529288 PEAK1Q9H792 1746 aa18.19■□□□□ 0.5
CPSF1-204ENST00000529288 SPON1Q9HCB6 807 aa18.19■□□□□ 0.5
CPSF1-204ENST00000529288 ANO8Q9HCE9 1232 aaPredicted RBP18.19■□□□□ 0.5
CPSF1-204ENST00000529288 USP47Q96K76 1375 aa18.18■□□□□ 0.5
CPSF1-204ENST00000529288 NINLQ9Y2I6 1382 aa18.18■□□□□ 0.5
CPSF1-204ENST00000529288 TXNRD1Q16881 649 aa18.18■□□□□ 0.5
CPSF1-204ENST00000529288 PROM2Q8N271 834 aa18.18■□□□□ 0.5
CPSF1-204ENST00000529288 DDX54Q8TDD1 881 aaKnown RBP18.18■□□□□ 0.5
CPSF1-204ENST00000529288 RREB1Q92766 1687 aa18.18■□□□□ 0.5
CPSF1-204ENST00000529288 NUP188Q5SRE5 1749 aa18.18■□□□□ 0.5
CPSF1-204ENST00000529288 TNS2Q63HR2 1409 aa18.17■□□□□ 0.5
CPSF1-204ENST00000529288 GGNBP2Q9H3C7 697 aa18.17■□□□□ 0.5
CPSF1-204ENST00000529288 ABCC6O95255 1503 aa18.17■□□□□ 0.5
CPSF1-204ENST00000529288 STK32BQ9NY57 414 aa18.16■□□□□ 0.5
CPSF1-204ENST00000529288 MAP3K19Q56UN5 1328 aa18.16■□□□□ 0.5
CPSF1-204ENST00000529288 BCL9O00512 1426 aa18.15■□□□□ 0.5
CPSF1-204ENST00000529288 HOXC9P31274 260 aa18.15■□□□□ 0.5
CPSF1-204ENST00000529288 ANKRD36BQ8N2N9 1353 aa18.15■□□□□ 0.5
CPSF1-204ENST00000529288 WNK3Q9BYP7 1800 aa18.14■□□□□ 0.5
CPSF1-204ENST00000529288 RRS1Q15050 365 aaKnown RBP18.14■□□□□ 0.49
CPSF1-204ENST00000529288 ZBTB7AO95365 584 aa18.13■□□□□ 0.49
CPSF1-204ENST00000529288 CDCA8Q53HL2 280 aa18.13■□□□□ 0.49
CPSF1-204ENST00000529288 PDGFDQ9GZP0 370 aaPredicted RBP18.13■□□□□ 0.49
CPSF1-204ENST00000529288 LTN1O94822 1766 aa18.12■□□□□ 0.49
CPSF1-204ENST00000529288 FYB1O15117 783 aa18.12■□□□□ 0.49
CPSF1-204ENST00000529288 POLR3GLQ9BT43 218 aa18.12■□□□□ 0.49
CPSF1-204ENST00000529288 ATF5Q9Y2D1 282 aaPredicted RBP18.12■□□□□ 0.49
CPSF1-204ENST00000529288 USP54Q70EL1 1684 aa18.12■□□□□ 0.49
CPSF1-204ENST00000529288 SYTL4Q96C24 671 aaPredicted RBP18.11■□□□□ 0.49
CPSF1-204ENST00000529288 SBF2Q86WG5 1849 aa18.11■□□□□ 0.49
CPSF1-204ENST00000529288 SLC15A2Q16348 729 aa18.1■□□□□ 0.49
CPSF1-204ENST00000529288 USHBP1Q8N6Y0 703 aa18.09■□□□□ 0.49
CPSF1-204ENST00000529288 DCAF8L1A6NGE4 600 aa18.08■□□□□ 0.48
CPSF1-204ENST00000529288 ZCRB1Q8TBF4 217 aaKnown RBP18.07■□□□□ 0.48
CPSF1-204ENST00000529288 PRIM1P49642 420 aaKnown RBP18.06■□□□□ 0.48
CPSF1-204ENST00000529288 NBPF6Q5VWK0 638 aa18.06■□□□□ 0.48
CPSF1-204ENST00000529288 NBPF4Q96M43 638 aa18.06■□□□□ 0.48
CPSF1-204ENST00000529288 HSP90AB2PQ58FF8 381 aa18.05■□□□□ 0.48
CPSF1-204ENST00000529288 RAPGEF4Q8WZA2 1011 aa18.05■□□□□ 0.48
CPSF1-204ENST00000529288 TIMELESSQ9UNS1 1208 aa18.05■□□□□ 0.48
CPSF1-204ENST00000529288 RGPD3A6NKT7 1758 aaPredicted RBP18.04■□□□□ 0.48
CPSF1-204ENST00000529288 RGPD4Q7Z3J3 1758 aa18.04■□□□□ 0.48
CPSF1-204ENST00000529288 PPM1GO15355 546 aaPredicted RBP18.04■□□□□ 0.48
CPSF1-204ENST00000529288 CARD14Q9BXL6 1004 aa18.04■□□□□ 0.48
CPSF1-204ENST00000529288 LRRC4BQ9NT99 713 aa18.03■□□□□ 0.48
CPSF1-204ENST00000529288 SMG6Q86US8 1419 aaKnown RBP18.03■□□□□ 0.48
CPSF1-204ENST00000529288 RTL1A6NKG5 1358 aa18.03■□□□□ 0.48
CPSF1-204ENST00000529288 NHSQ6T4R5 1651 aa18.03■□□□□ 0.48
CPSF1-204ENST00000529288 TATP17735 454 aaPredicted RBP18.02■□□□□ 0.48
CPSF1-204ENST00000529288 KCNQ4P56696 695 aa18.02■□□□□ 0.48
CPSF1-204ENST00000529288 NSD3Q9BZ95 1437 aa18.02■□□□□ 0.48
CPSF1-204ENST00000529288 ZNF827Q17R98 1081 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms