RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 EVA1CP58658 441 aa14.99□□□□□ -0.01
CD44-227ENST00000528086 TMF1P82094 1093 aa14.99□□□□□ -0.01
CD44-227ENST00000528086 HDGFL2Q7Z4V5 671 aaPredicted RBP14.99□□□□□ -0.01
CD44-227ENST00000528086 CARD14Q9BXL6 1004 aa14.99□□□□□ -0.01
CD44-227ENST00000528086 TERF2IPQ9NYB0 399 aa14.99□□□□□ -0.01
CD44-227ENST00000528086 CRB1P82279 1406 aa14.99□□□□□ -0.01
CD44-227ENST00000528086 TNS1Q9HBL0 1735 aaKnown RBP14.98□□□□□ -0.01
CD44-227ENST00000528086 DEFB132Q7Z7B7 95 aa14.98□□□□□ -0.01
CD44-227ENST00000528086 TCP11L2Q8N4U5 519 aa14.98□□□□□ -0.01
CD44-227ENST00000528086 KCNH5Q8NCM2 988 aa14.98□□□□□ -0.01
CD44-227ENST00000528086 BLMP54132 1417 aaPredicted RBP14.98□□□□□ -0.01
CD44-227ENST00000528086 PEAK1Q9H792 1746 aa14.97□□□□□ -0.01
CD44-227ENST00000528086 ABCC6O95255 1503 aa14.97□□□□□ -0.01
CD44-227ENST00000528086 LRRC37A3O60309 1634 aa14.97□□□□□ -0.01
CD44-227ENST00000528086 C11orf95C9JLR9 678 aaPredicted RBP14.97□□□□□ -0.01
CD44-227ENST00000528086 WDR17Q8IZU2 1322 aa14.96□□□□□ -0.01
CD44-227ENST00000528086 DISP2A7MBM2 1401 aa14.96□□□□□ -0.01
CD44-227ENST00000528086 FYB1O15117 783 aa14.96□□□□□ -0.01
CD44-227ENST00000528086 HSPA5P11021 654 aaKnown RBP14.96□□□□□ -0.01
CD44-227ENST00000528086 A0A0G2JS52 829 aa14.95□□□□□ -0.02
CD44-227ENST00000528086 MYT1Q01538 1121 aa14.95□□□□□ -0.02
CD44-227ENST00000528086 CCDC125Q86Z20 511 aa14.95□□□□□ -0.02
CD44-227ENST00000528086 KIF20BQ96Q89 1820 aa14.94□□□□□ -0.02
CD44-227ENST00000528086 RGPD2P0DJD1 1756 aa14.94□□□□□ -0.02
CD44-227ENST00000528086 SLC24A1O60721 1099 aa14.94□□□□□ -0.02
CD44-227ENST00000528086 THRAP3Q9Y2W1 955 aaKnown RBP14.94□□□□□ -0.02
CD44-227ENST00000528086 SBF2Q86WG5 1849 aa14.94□□□□□ -0.02
CD44-227ENST00000528086 SRCAPQ6ZRS2 3230 aa14.94□□□□□ -0.02
CD44-227ENST00000528086 RGPD1P0DJD0 1748 aa14.93□□□□□ -0.02
CD44-227ENST00000528086 ERBB3P21860 1342 aa14.92□□□□□ -0.02
CD44-227ENST00000528086 CARD10Q9BWT7 1032 aa14.92□□□□□ -0.02
CD44-227ENST00000528086 GGNBP2Q9H3C7 697 aa14.92□□□□□ -0.02
CD44-227ENST00000528086 MAP3K19Q56UN5 1328 aa14.92□□□□□ -0.02
CD44-227ENST00000528086 TOM1L2Q6ZVM7 507 aa14.91□□□□□ -0.02
CD44-227ENST00000528086 EIF4G2P78344 907 aaKnown RBP eCLIP14.9□□□□□ -0.02
CD44-227ENST00000528086 PTF1AQ7RTS3 328 aa14.9□□□□□ -0.02
CD44-227ENST00000528086 NSD3Q9BZ95 1437 aa14.9□□□□□ -0.02
CD44-227ENST00000528086 FAM208AQ9UK61 1670 aaKnown RBP14.9□□□□□ -0.02
CD44-227ENST00000528086 IP6K1Q92551 441 aa14.89□□□□□ -0.03
CD44-227ENST00000528086 TRIM37O94972 964 aa14.88□□□□□ -0.03
CD44-227ENST00000528086 RRS1Q15050 365 aaKnown RBP14.88□□□□□ -0.03
CD44-227ENST00000528086 CDCA8Q53HL2 280 aa14.88□□□□□ -0.03
CD44-227ENST00000528086 MARCH10Q8NA82 808 aaPredicted RBP14.88□□□□□ -0.03
CD44-227ENST00000528086 COG3Q96JB2 828 aa14.88□□□□□ -0.03
CD44-227ENST00000528086 HOXC9P31274 260 aa14.87□□□□□ -0.03
CD44-227ENST00000528086 EN1Q05925 392 aaPredicted RBP14.87□□□□□ -0.03
CD44-227ENST00000528086 FAM196AQ6ZSG2 479 aa14.87□□□□□ -0.03
CD44-227ENST00000528086 ANKRD24Q8TF21 1146 aa14.87□□□□□ -0.03
CD44-227ENST00000528086 SHANK3Q9BYB0 1731 aa14.86□□□□□ -0.03
CD44-227ENST00000528086 ANKRD26Q9UPS8 1709 aa14.86□□□□□ -0.03
CD44-227ENST00000528086 CSB-PGBD3P0DP91 1061 aa14.85□□□□□ -0.03
CD44-227ENST00000528086 PDE3BQ13370 1112 aa14.85□□□□□ -0.03
CD44-227ENST00000528086 CAMKK2Q96RR4 588 aa14.85□□□□□ -0.03
CD44-227ENST00000528086 MAP2P11137 1827 aaKnown RBP14.85□□□□□ -0.03
CD44-227ENST00000528086 CCDC7Q96M83 1385 aa14.85□□□□□ -0.03
CD44-227ENST00000528086 RREB1Q92766 1687 aa14.84□□□□□ -0.03
CD44-227ENST00000528086 EZH2Q15910 746 aaKnown RBP14.84□□□□□ -0.03
CD44-227ENST00000528086 DDB1Q16531 1140 aa14.84□□□□□ -0.03
CD44-227ENST00000528086 BCL9O00512 1426 aa14.83□□□□□ -0.03
CD44-227ENST00000528086 NLRP2Q9NX02 1062 aa14.83□□□□□ -0.04
CD44-227ENST00000528086 TNS2Q63HR2 1409 aa14.83□□□□□ -0.04
CD44-227ENST00000528086 HSP90AB2PQ58FF8 381 aa14.82□□□□□ -0.04
CD44-227ENST00000528086 LTV1Q96GA3 475 aaPredicted RBP14.82□□□□□ -0.04
CD44-227ENST00000528086 PANK3Q9H999 370 aa14.82□□□□□ -0.04
CD44-227ENST00000528086 EMILIN1Q9Y6C2 1016 aa14.82□□□□□ -0.04
CD44-227ENST00000528086 NUP188Q5SRE5 1749 aa14.82□□□□□ -0.04
CD44-227ENST00000528086 OVOS2A0A0G2JMS6 1433 aa14.82□□□□□ -0.04
CD44-227ENST00000528086 BAG6P46379 1132 aa14.81□□□□□ -0.04
CD44-227ENST00000528086 POLR3GLQ9BT43 218 aa14.81□□□□□ -0.04
CD44-227ENST00000528086 KIF7Q2M1P5 1343 aa14.81□□□□□ -0.04
CD44-227ENST00000528086 RTL1A6NKG5 1358 aa14.81□□□□□ -0.04
CD44-227ENST00000528086 MEGF6O75095 1541 aa14.81□□□□□ -0.04
CD44-227ENST00000528086 AMPHP49418 695 aa14.8□□□□□ -0.04
CD44-227ENST00000528086 SF3B2Q13435 895 aaKnown RBP14.8□□□□□ -0.04
CD44-227ENST00000528086 NBPF6Q5VWK0 638 aa14.8□□□□□ -0.04
CD44-227ENST00000528086 NBPF4Q96M43 638 aa14.8□□□□□ -0.04
CD44-227ENST00000528086 CDCA7Q9BWT1 371 aaPredicted RBP14.8□□□□□ -0.04
CD44-227ENST00000528086 APBA3O96018 575 aa14.79□□□□□ -0.04
CD44-227ENST00000528086 IL2RBP14784 551 aa14.79□□□□□ -0.04
CD44-227ENST00000528086 PROM2Q8N271 834 aa14.79□□□□□ -0.04
CD44-227ENST00000528086 INSRP06213 1382 aa14.78□□□□□ -0.04
CD44-227ENST00000528086 KCNQ2O43526 872 aa14.78□□□□□ -0.04
CD44-227ENST00000528086 RGPD3A6NKT7 1758 aaPredicted RBP14.78□□□□□ -0.04
CD44-227ENST00000528086 RGPD4Q7Z3J3 1758 aa14.78□□□□□ -0.04
CD44-227ENST00000528086 NHSQ6T4R5 1651 aa14.77□□□□□ -0.04
CD44-227ENST00000528086 NCAPD2Q15021 1401 aa14.77□□□□□ -0.04
CD44-227ENST00000528086 EXOC5O00471 708 aa14.77□□□□□ -0.05
CD44-227ENST00000528086 USHBP1Q8N6Y0 703 aa14.77□□□□□ -0.05
CD44-227ENST00000528086 POLKQ9UBT6 870 aa14.77□□□□□ -0.05
CD44-227ENST00000528086 FLT4P35916 1363 aa14.76□□□□□ -0.05
CD44-227ENST00000528086 CGNL1Q0VF96 1302 aa14.76□□□□□ -0.05
CD44-227ENST00000528086 PSDA5PKW4 1024 aaPredicted RBP14.76□□□□□ -0.05
CD44-227ENST00000528086 KIF24Q5T7B8 1368 aa14.75□□□□□ -0.05
CD44-227ENST00000528086 PER1O15534 1290 aaPredicted RBP14.75□□□□□ -0.05
CD44-227ENST00000528086 BCL11BQ9C0K0 894 aaPredicted RBP14.75□□□□□ -0.05
CD44-227ENST00000528086 BTAF1O14981 1849 aa14.75□□□□□ -0.05
CD44-227ENST00000528086 KAT6BQ8WYB5 2073 aa14.75□□□□□ -0.05
CD44-227ENST00000528086 AMER1Q5JTC6 1135 aaPredicted RBP14.74□□□□□ -0.05
CD44-227ENST00000528086 PARD3Q8TEW0 1356 aa14.73□□□□□ -0.05
CD44-227ENST00000528086 WASHC2AQ641Q2 1341 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms