RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 TOPAZ1Q8N9V7 1692 aa15.24■□□□□ 0.03
CPSF1-203ENST00000527916 BRD4O60885 1362 aaPredicted RBP15.24■□□□□ 0.03
CPSF1-203ENST00000527916 AATKQ6ZMQ8 1374 aa15.24■□□□□ 0.03
CPSF1-203ENST00000527916 PROM2Q8N271 834 aa15.23■□□□□ 0.03
CPSF1-203ENST00000527916 MTFR1LQ9H019 292 aa15.23■□□□□ 0.03
CPSF1-203ENST00000527916 CEP350Q5VT06 3117 aa15.23■□□□□ 0.03
CPSF1-203ENST00000527916 LRRC37A3O60309 1634 aa15.22■□□□□ 0.03
CPSF1-203ENST00000527916 SLC15A2Q16348 729 aa15.22■□□□□ 0.03
CPSF1-203ENST00000527916 TXNRD1Q16881 649 aa15.22■□□□□ 0.03
CPSF1-203ENST00000527916 BCL9O00512 1426 aa15.22■□□□□ 0.03
CPSF1-203ENST00000527916 NLRP6P59044 892 aa15.21■□□□□ 0.03
CPSF1-203ENST00000527916 SRPK2P78362 688 aaKnown RBP15.21■□□□□ 0.03
CPSF1-203ENST00000527916 PTF1AQ7RTS3 328 aa15.21■□□□□ 0.03
CPSF1-203ENST00000527916 MARCH10Q8NA82 808 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-203ENST00000527916 PPIP5K1Q6PFW1 1433 aa15.2■□□□□ 0.02
CPSF1-203ENST00000527916 GOLGB1Q14789 3259 aaKnown RBP15.19■□□□□ 0.02
CPSF1-203ENST00000527916 WDR17Q8IZU2 1322 aa15.19■□□□□ 0.02
CPSF1-203ENST00000527916 IFFO2Q5TF58 517 aa15.19■□□□□ 0.02
CPSF1-203ENST00000527916 ARXQ96QS3 562 aa15.19■□□□□ 0.02
CPSF1-203ENST00000527916 KIAA1210Q9ULL0 1709 aa15.19■□□□□ 0.02
CPSF1-203ENST00000527916 AKAP12Q02952 1782 aa15.19■□□□□ 0.02
CPSF1-203ENST00000527916 EXOC5O00471 708 aa15.18■□□□□ 0.02
CPSF1-203ENST00000527916 CSB-PGBD3P0DP91 1061 aa15.17■□□□□ 0.02
CPSF1-203ENST00000527916 SGIP1Q9BQI5 828 aa15.17■□□□□ 0.02
CPSF1-203ENST00000527916 GPR162Q16538 588 aa15.16■□□□□ 0.02
CPSF1-203ENST00000527916 CARD10Q9BWT7 1032 aa15.16■□□□□ 0.02
CPSF1-203ENST00000527916 MAP3K5Q99683 1374 aa15.15■□□□□ 0.02
CPSF1-203ENST00000527916 GIGYF1O75420 1035 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-203ENST00000527916 CABP2Q9NPB3 220 aa15.15■□□□□ 0.02
CPSF1-203ENST00000527916 AXIN2Q9Y2T1 843 aa15.15■□□□□ 0.02
CPSF1-203ENST00000527916 SLIT3O75094 1523 aa15.15■□□□□ 0.02
CPSF1-203ENST00000527916 USP6P35125 1406 aa15.15■□□□□ 0.02
CPSF1-203ENST00000527916 KCNH5Q8NCM2 988 aa15.14■□□□□ 0.01
CPSF1-203ENST00000527916 CABP1Q9NZU7 370 aa15.14■□□□□ 0.01
CPSF1-203ENST00000527916 WNK3Q9BYP7 1800 aa15.14■□□□□ 0.01
CPSF1-203ENST00000527916 CPSF1Q10570 1443 aaKnown RBP15.13■□□□□ 0.01
CPSF1-203ENST00000527916 COL18A1P39060 1754 aa15.13■□□□□ 0.01
CPSF1-203ENST00000527916 CENPJQ9HC77 1338 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-203ENST00000527916 ARHGEF25Q86VW2 580 aa15.12■□□□□ 0.01
CPSF1-203ENST00000527916 KAT6BQ8WYB5 2073 aa15.12■□□□□ 0.01
CPSF1-203ENST00000527916 CCDC7Q96M83 1385 aa15.11■□□□□ 0.01
CPSF1-203ENST00000527916 TNS2Q63HR2 1409 aa15.09■□□□□ 0.01
CPSF1-203ENST00000527916 SOX12O15370 315 aa15.09■□□□□ 0.01
CPSF1-203ENST00000527916 POLD1P28340 1107 aa15.09■□□□□ 0.01
CPSF1-203ENST00000527916 NBPF1Q3BBV0 1214 aa15.09■□□□□ 0.01
CPSF1-203ENST00000527916 SLC16A10Q8TF71 515 aa15.09■□□□□ 0.01
CPSF1-203ENST00000527916 L3MBTL2Q969R5 705 aa15.09■□□□□ 0.01
CPSF1-203ENST00000527916 ZNF692Q9BU19 519 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-203ENST00000527916 PELP1Q8IZL8 1130 aaKnown RBP15.08■□□□□ 0
CPSF1-203ENST00000527916 KLHL34Q8N239 644 aa15.08■□□□□ 0
CPSF1-203ENST00000527916 ACSBG1Q96GR2 724 aa15.08■□□□□ 0
CPSF1-203ENST00000527916 PIK3C2AO00443 1686 aa15.08■□□□□ 0
CPSF1-203ENST00000527916 NHSQ6T4R5 1651 aa15.07■□□□□ 0
CPSF1-203ENST00000527916 QRICH2Q9H0J4 1663 aa15.07■□□□□ 0
CPSF1-203ENST00000527916 RGPD5Q99666 1765 aa15.07■□□□□ 0
CPSF1-203ENST00000527916 SIN3AQ96ST3 1273 aa15.06■□□□□ 0
CPSF1-203ENST00000527916 TTC21BQ7Z4L5 1316 aa15.06■□□□□ 0
CPSF1-203ENST00000527916 EVC2Q86UK5 1308 aa15.06■□□□□ 0
CPSF1-203ENST00000527916 TTC21AQ8NDW8 1320 aa15.06■□□□□ 0
CPSF1-203ENST00000527916 ZNF827Q17R98 1081 aa15.05■□□□□ -0
CPSF1-203ENST00000527916 TRPM1Q7Z4N2 1603 aa15.05■□□□□ -0
CPSF1-203ENST00000527916 PAPPAQ13219 1627 aa15.04■□□□□ -0
CPSF1-203ENST00000527916 ABCC6O95255 1503 aa15.04■□□□□ -0
CPSF1-203ENST00000527916 GRIN3BO60391 1043 aa15.04■□□□□ -0
CPSF1-203ENST00000527916 IL2RBP14784 551 aa15.04■□□□□ -0
CPSF1-203ENST00000527916 SLC27A3Q5K4L6 730 aa15.04■□□□□ -0
CPSF1-203ENST00000527916 NLRP2Q9NX02 1062 aa15.04■□□□□ -0
CPSF1-203ENST00000527916 LRRC4BQ9NT99 713 aa15.03■□□□□ -0
CPSF1-203ENST00000527916 BTAF1O14981 1849 aa15.02■□□□□ -0
CPSF1-203ENST00000527916 NEUROD1Q13562 356 aa15.02■□□□□ -0
CPSF1-203ENST00000527916 AKT1S1Q96B36 256 aa15.02■□□□□ -0
CPSF1-203ENST00000527916 TFCP2L1Q9NZI6 479 aa15.01□□□□□ -0.01
CPSF1-203ENST00000527916 ERBB3P21860 1342 aa15□□□□□ -0.01
CPSF1-203ENST00000527916 TRIM26Q12899 539 aaPredicted RBP15□□□□□ -0.01
CPSF1-203ENST00000527916 NFAT5O94916 1531 aa15□□□□□ -0.01
CPSF1-203ENST00000527916 KTN1Q86UP2 1357 aaKnown RBP14.98□□□□□ -0.01
CPSF1-203ENST00000527916 PNPLA7Q6ZV29 1317 aa14.98□□□□□ -0.01
CPSF1-203ENST00000527916 QSER1Q2KHR3 1735 aa14.98□□□□□ -0.01
CPSF1-203ENST00000527916 SHANK3Q9BYB0 1731 aa14.98□□□□□ -0.01
CPSF1-203ENST00000527916 NLGN2Q8NFZ4 835 aa14.98□□□□□ -0.01
CPSF1-203ENST00000527916 ANKRD24Q8TF21 1146 aa14.96□□□□□ -0.01
CPSF1-203ENST00000527916 ROCK2O75116 1388 aaKnown RBP14.96□□□□□ -0.02
CPSF1-203ENST00000527916 COL24A1Q17RW2 1714 aa14.95□□□□□ -0.02
CPSF1-203ENST00000527916 YBX3P16989 372 aaKnown RBP eCLIP14.95□□□□□ -0.02
CPSF1-203ENST00000527916 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.95□□□□□ -0.02
CPSF1-203ENST00000527916 DDX54Q8TDD1 881 aaKnown RBP14.95□□□□□ -0.02
CPSF1-203ENST00000527916 GPBP1L1Q9HC44 474 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-203ENST00000527916 MSH5O43196 834 aa14.94□□□□□ -0.02
CPSF1-203ENST00000527916 SYTL4Q96C24 671 aaPredicted RBP14.94□□□□□ -0.02
CPSF1-203ENST00000527916 USP31Q70CQ4 1352 aa14.94□□□□□ -0.02
CPSF1-203ENST00000527916 ATP10DQ9P241 1426 aa14.93□□□□□ -0.02
CPSF1-203ENST00000527916 HSPA6P17066 643 aa14.93□□□□□ -0.02
CPSF1-203ENST00000527916 HMGB2P26583 209 aaKnown RBP14.91□□□□□ -0.02
CPSF1-203ENST00000527916 PRIM1P49642 420 aaKnown RBP14.91□□□□□ -0.02
CPSF1-203ENST00000527916 KCNQ4P56696 695 aa14.91□□□□□ -0.02
CPSF1-203ENST00000527916 LTN1O94822 1766 aa14.9□□□□□ -0.02
CPSF1-203ENST00000527916 ANKRD36BQ8N2N9 1353 aa14.9□□□□□ -0.02
CPSF1-203ENST00000527916 TONSLQ96HA7 1378 aa14.9□□□□□ -0.02
CPSF1-203ENST00000527916 NME9Q86XW9 330 aa14.9□□□□□ -0.02
CPSF1-203ENST00000527916 CCNL1Q9UK58 526 aaPredicted RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms