RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 IP6K1Q92551 441 aa27.71■■■□□ 2.03
VPS28-208ENST00000527797 NEFMP07197 916 aa27.7■■■□□ 2.03
VPS28-208ENST00000527797 HMOX1P09601 288 aa27.7■■■□□ 2.03
VPS28-208ENST00000527797 IQSEC2Q5JU85 1478 aa27.7■■■□□ 2.02
VPS28-208ENST00000527797 ARHGEF25Q86VW2 580 aa27.7■■■□□ 2.02
VPS28-208ENST00000527797 PRKAR2BP31323 418 aa27.69■■■□□ 2.02
VPS28-208ENST00000527797 NCBP3Q53F19 620 aaKnown RBP27.69■■■□□ 2.02
VPS28-208ENST00000527797 ZNF521Q96K83 1311 aa27.69■■■□□ 2.02
VPS28-208ENST00000527797 ZBTB7CA1YPR0 619 aa27.68■■■□□ 2.02
VPS28-208ENST00000527797 MED1Q15648 1581 aaPredicted RBP27.67■■■□□ 2.02
VPS28-208ENST00000527797 NEUROD2Q15784 382 aa27.67■■■□□ 2.02
VPS28-208ENST00000527797 RRP7AQ9Y3A4 280 aaKnown RBP27.67■■■□□ 2.02
VPS28-208ENST00000527797 NHSL1Q5SYE7 1610 aa27.65■■■□□ 2.02
VPS28-208ENST00000527797 GOLGA2Q08379 1002 aa27.64■■■□□ 2.02
VPS28-208ENST00000527797 SULT6B1Q6IMI4 303 aa27.64■■■□□ 2.02
VPS28-208ENST00000527797 TMPOP42166 694 aaKnown RBP27.63■■■□□ 2.01
VPS28-208ENST00000527797 CCDC27Q2M243 656 aa27.63■■■□□ 2.01
VPS28-208ENST00000527797 CDCA7LQ96GN5 454 aa27.63■■■□□ 2.01
VPS28-208ENST00000527797 LTN1O94822 1766 aa27.63■■■□□ 2.01
VPS28-208ENST00000527797 TOM1O60784 492 aa27.63■■■□□ 2.01
VPS28-208ENST00000527797 WWC1Q8IX03 1113 aa27.63■■■□□ 2.01
VPS28-208ENST00000527797 CABLES1Q8TDN4 633 aa27.63■■■□□ 2.01
VPS28-208ENST00000527797 ZC3H6P61129 1189 aaKnown RBP27.62■■■□□ 2.01
VPS28-208ENST00000527797 LTV1Q96GA3 475 aaPredicted RBP27.62■■■□□ 2.01
VPS28-208ENST00000527797 EYA1Q99502 592 aa27.62■■■□□ 2.01
VPS28-208ENST00000527797 PHRF1Q9P1Y6 1649 aaKnown RBP27.62■■■□□ 2.01
VPS28-208ENST00000527797 PHF23Q9BUL5 403 aaPredicted RBP27.61■■■□□ 2.01
VPS28-208ENST00000527797 IGSF1Q8N6C5 1336 aa27.6■■■□□ 2.01
VPS28-208ENST00000527797 AEBP1Q8IUX7 1158 aa27.6■■■□□ 2.01
VPS28-208ENST00000527797 ROBO1Q9Y6N7 1651 aa27.6■■■□□ 2.01
VPS28-208ENST00000527797 RGPD1P0DJD0 1748 aa27.59■■■□□ 2.01
VPS28-208ENST00000527797 PHACTR3Q96KR7 559 aa27.59■■■□□ 2.01
VPS28-208ENST00000527797 RIPK4P57078 832 aa27.58■■■□□ 2.01
VPS28-208ENST00000527797 LRRC59Q96AG4 307 aaKnown RBP27.57■■■□□ 2
VPS28-208ENST00000527797 NFE2L2Q16236 605 aa27.56■■■□□ 2
VPS28-208ENST00000527797 WDR63Q8IWG1 891 aa27.56■■■□□ 2
VPS28-208ENST00000527797 SLFN5Q08AF3 891 aa27.56■■■□□ 2
VPS28-208ENST00000527797 AHDC1Q5TGY3 1603 aaPredicted RBP27.56■■■□□ 2
VPS28-208ENST00000527797 GTF3C3Q9Y5Q9 886 aa27.55■■■□□ 2
VPS28-208ENST00000527797 CPDO75976 1380 aa27.55■■■□□ 2
VPS28-208ENST00000527797 KDRP35968 1356 aa27.55■■■□□ 2
VPS28-208ENST00000527797 E9PSI1 815 aa27.54■■■□□ 2
VPS28-208ENST00000527797 HAP1P54257 671 aaPredicted RBP27.54■■■□□ 2
VPS28-208ENST00000527797 AXIN2Q9Y2T1 843 aa27.53■■■□□ 2
VPS28-208ENST00000527797 CRYBG1Q9Y4K1 1723 aa27.53■■■□□ 2
VPS28-208ENST00000527797 ANKRD24Q8TF21 1146 aa27.52■■■□□ 2
VPS28-208ENST00000527797 TRIM35Q9UPQ4 493 aa27.52■■■□□ 2
VPS28-208ENST00000527797 KIAA0232Q92628 1395 aa27.51■■□□□ 1.99
VPS28-208ENST00000527797 UBAP1LF5GYI3 381 aa27.51■■□□□ 1.99
VPS28-208ENST00000527797 PIP4K2BP78356 416 aa27.51■■□□□ 1.99
VPS28-208ENST00000527797 DUSP27Q5VZP5 1158 aa27.51■■□□□ 1.99
VPS28-208ENST00000527797 TRMT2AQ8IZ69 625 aaKnown RBP27.51■■□□□ 1.99
VPS28-208ENST00000527797 SUPT16HQ9Y5B9 1047 aaKnown RBP27.51■■□□□ 1.99
VPS28-208ENST00000527797 NBPF6Q5VWK0 638 aa27.5■■□□□ 1.99
VPS28-208ENST00000527797 NBPF4Q96M43 638 aa27.5■■□□□ 1.99
VPS28-208ENST00000527797 SPINK5Q9NQ38 1064 aaPredicted RBP27.49■■□□□ 1.99
VPS28-208ENST00000527797 ABCC6O95255 1503 aa27.49■■□□□ 1.99
VPS28-208ENST00000527797 LMOD3Q0VAK6 560 aa27.48■■□□□ 1.99
VPS28-208ENST00000527797 CHRNA2Q15822 529 aa27.47■■□□□ 1.99
VPS28-208ENST00000527797 USHBP1Q8N6Y0 703 aa27.46■■□□□ 1.99
VPS28-208ENST00000527797 CERKQ8TCT0 537 aa27.46■■□□□ 1.99
VPS28-208ENST00000527797 PRDM11Q9NQV5 511 aa27.46■■□□□ 1.99
VPS28-208ENST00000527797 ERBB3P21860 1342 aa27.46■■□□□ 1.99
VPS28-208ENST00000527797 IL16Q14005 1332 aa27.44■■□□□ 1.98
VPS28-208ENST00000527797 COL18A1P39060 1754 aa27.42■■□□□ 1.98
VPS28-208ENST00000527797 NEFLP07196 543 aa27.42■■□□□ 1.98
VPS28-208ENST00000527797 GAS2L2Q8NHY3 880 aa27.42■■□□□ 1.98
VPS28-208ENST00000527797 MYH16Q9H6N6 1097 aa27.42■■□□□ 1.98
VPS28-208ENST00000527797 RCAN3Q9UKA8 241 aa27.42■■□□□ 1.98
VPS28-208ENST00000527797 CALD1Q05682 793 aaKnown RBP27.41■■□□□ 1.98
VPS28-208ENST00000527797 MTHFSDQ2M296 383 aaKnown RBP27.41■■□□□ 1.98
VPS28-208ENST00000527797 CSB-PGBD3P0DP91 1061 aa27.41■■□□□ 1.98
VPS28-208ENST00000527797 PHLPP1O60346 1717 aa27.4■■□□□ 1.98
VPS28-208ENST00000527797 ABCA3Q99758 1704 aa27.4■■□□□ 1.98
VPS28-208ENST00000527797 NCAPD2Q15021 1401 aa27.39■■□□□ 1.98
VPS28-208ENST00000527797 NLRP2Q9NX02 1062 aa27.38■■□□□ 1.97
VPS28-208ENST00000527797 COL16A1Q07092 1604 aaPredicted RBP27.37■■□□□ 1.97
VPS28-208ENST00000527797 COL22A1Q8NFW1 1626 aaPredicted RBP27.36■■□□□ 1.97
VPS28-208ENST00000527797 RGPD5Q99666 1765 aa27.36■■□□□ 1.97
VPS28-208ENST00000527797 FAM83GA6ND36 823 aa27.34■■□□□ 1.97
VPS28-208ENST00000527797 THUMPD2Q9BTF0 503 aaKnown RBP27.34■■□□□ 1.97
VPS28-208ENST00000527797 CAMTA1Q9Y6Y1 1673 aa27.34■■□□□ 1.97
VPS28-208ENST00000527797 RGPD2P0DJD1 1756 aa27.33■■□□□ 1.97
VPS28-208ENST00000527797 HTATSF1O43719 755 aaKnown RBP27.33■■□□□ 1.97
VPS28-208ENST00000527797 PLEKHO1Q53GL0 409 aaPredicted RBP27.33■■□□□ 1.97
VPS28-208ENST00000527797 RTF1Q92541 710 aaKnown RBP27.33■■□□□ 1.97
VPS28-208ENST00000527797 RNF123Q5XPI4 1314 aa27.32■■□□□ 1.96
VPS28-208ENST00000527797 AMOTQ4VCS5 1084 aa27.32■■□□□ 1.96
VPS28-208ENST00000527797 FANCIQ9NVI1 1328 aa27.32■■□□□ 1.96
VPS28-208ENST00000527797 GNAI1P63096 354 aa27.31■■□□□ 1.96
VPS28-208ENST00000527797 DCTN1Q14203 1278 aa27.31■■□□□ 1.96
VPS28-208ENST00000527797 FKBP8Q14318 412 aa27.31■■□□□ 1.96
VPS28-208ENST00000527797 LMO7Q8WWI1 1683 aa27.31■■□□□ 1.96
VPS28-208ENST00000527797 WDR17Q8IZU2 1322 aa27.31■■□□□ 1.96
VPS28-208ENST00000527797 TSR2Q969E8 191 aaKnown RBP27.3■■□□□ 1.96
VPS28-208ENST00000527797 IFT57Q9NWB7 429 aa27.3■■□□□ 1.96
VPS28-208ENST00000527797 DLG5Q8TDM6 1919 aa27.3■■□□□ 1.96
VPS28-208ENST00000527797 GNAT3A8MTJ3 354 aa27.3■■□□□ 1.96
VPS28-208ENST00000527797 MCM10Q7L590 875 aa27.3■■□□□ 1.96
VPS28-208ENST00000527797 RAPGEF4Q8WZA2 1011 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms