RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 PARD3Q8TEW0 1356 aa14.72□□□□□ -0.05
NEDD8-205ENST00000527046 HOXC9P31274 260 aa14.71□□□□□ -0.05
NEDD8-205ENST00000527046 CNGB1Q14028 1251 aaPredicted RBP14.71□□□□□ -0.05
NEDD8-205ENST00000527046 NWD2Q9ULI1 1742 aa14.7□□□□□ -0.06
NEDD8-205ENST00000527046 POTEAQ6S8J7 498 aa14.7□□□□□ -0.06
NEDD8-205ENST00000527046 SMG6Q86US8 1419 aaKnown RBP14.69□□□□□ -0.06
NEDD8-205ENST00000527046 HSP90AB2PQ58FF8 381 aa14.69□□□□□ -0.06
NEDD8-205ENST00000527046 MEX3CQ5U5Q3 659 aaKnown RBP14.69□□□□□ -0.06
NEDD8-205ENST00000527046 UNC5CLQ8IV45 518 aa14.69□□□□□ -0.06
NEDD8-205ENST00000527046 USP21Q9UK80 565 aa14.69□□□□□ -0.06
NEDD8-205ENST00000527046 COL5A2P05997 1499 aaPredicted RBP14.69□□□□□ -0.06
NEDD8-205ENST00000527046 ABCC6O95255 1503 aa14.68□□□□□ -0.06
NEDD8-205ENST00000527046 PPP2R1AP30153 589 aa14.68□□□□□ -0.06
NEDD8-205ENST00000527046 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.67□□□□□ -0.06
NEDD8-205ENST00000527046 ZBTB7CA1YPR0 619 aa14.67□□□□□ -0.06
NEDD8-205ENST00000527046 MTHFSP49914 203 aa14.67□□□□□ -0.06
NEDD8-205ENST00000527046 LARP1Q6PKG0 1096 aaKnown RBP14.67□□□□□ -0.06
NEDD8-205ENST00000527046 PRKRIP1Q9H875 184 aaPredicted RBP14.67□□□□□ -0.06
NEDD8-205ENST00000527046 KIF24Q5T7B8 1368 aa14.67□□□□□ -0.06
NEDD8-205ENST00000527046 ATRNO75882 1429 aa14.66□□□□□ -0.06
NEDD8-205ENST00000527046 INSRP06213 1382 aa14.66□□□□□ -0.06
NEDD8-205ENST00000527046 QTRT2Q9H974 415 aaKnown RBP14.66□□□□□ -0.06
NEDD8-205ENST00000527046 VPS72Q15906 364 aa14.65□□□□□ -0.06
NEDD8-205ENST00000527046 BLMP54132 1417 aaPredicted RBP14.65□□□□□ -0.06
NEDD8-205ENST00000527046 RGPD2P0DJD1 1756 aa14.65□□□□□ -0.06
NEDD8-205ENST00000527046 ERBB3P21860 1342 aa14.65□□□□□ -0.06
NEDD8-205ENST00000527046 RTL1A6NKG5 1358 aa14.64□□□□□ -0.07
NEDD8-205ENST00000527046 FLT4P35916 1363 aa14.64□□□□□ -0.07
NEDD8-205ENST00000527046 AMPHP49418 695 aa14.64□□□□□ -0.07
NEDD8-205ENST00000527046 RALBP1Q15311 655 aa14.64□□□□□ -0.07
NEDD8-205ENST00000527046 GLI3P10071 1580 aa14.64□□□□□ -0.07
NEDD8-205ENST00000527046 SPATA31A5Q5VU36 1347 aa14.64□□□□□ -0.07
NEDD8-205ENST00000527046 SPATA31A7Q8IWB4 1347 aa14.64□□□□□ -0.07
NEDD8-205ENST00000527046 NBPF6Q5VWK0 638 aa14.63□□□□□ -0.07
NEDD8-205ENST00000527046 ZNF772Q68DY9 489 aaPredicted RBP14.63□□□□□ -0.07
NEDD8-205ENST00000527046 ANKRD24Q8TF21 1146 aa14.63□□□□□ -0.07
NEDD8-205ENST00000527046 NBPF4Q96M43 638 aa14.63□□□□□ -0.07
NEDD8-205ENST00000527046 STRN4Q9NRL3 753 aa14.63□□□□□ -0.07
NEDD8-205ENST00000527046 WDR17Q8IZU2 1322 aa14.63□□□□□ -0.07
NEDD8-205ENST00000527046 COL3A1P02461 1466 aaPredicted RBP14.63□□□□□ -0.07
NEDD8-205ENST00000527046 PPM1GO15355 546 aaPredicted RBP14.62□□□□□ -0.07
NEDD8-205ENST00000527046 ONECUT3O60422 494 aaPredicted RBP14.62□□□□□ -0.07
NEDD8-205ENST00000527046 IL13P35225 146 aa14.62□□□□□ -0.07
NEDD8-205ENST00000527046 EIF4A2Q14240 407 aaKnown RBP14.62□□□□□ -0.07
NEDD8-205ENST00000527046 GJD4Q96KN9 370 aaPredicted RBP14.62□□□□□ -0.07
NEDD8-205ENST00000527046 TRPC5Q9UL62 973 aaPredicted RBP14.62□□□□□ -0.07
NEDD8-205ENST00000527046 CDK12Q9NYV4 1490 aaPredicted RBP14.62□□□□□ -0.07
NEDD8-205ENST00000527046 SPATA31A1Q5TZJ5 1347 aa14.62□□□□□ -0.07
NEDD8-205ENST00000527046 EVA1CP58658 441 aa14.61□□□□□ -0.07
NEDD8-205ENST00000527046 CCDC184Q52MB2 194 aa14.61□□□□□ -0.07
NEDD8-205ENST00000527046 LTV1Q96GA3 475 aaPredicted RBP14.61□□□□□ -0.07
NEDD8-205ENST00000527046 NCAPD2Q15021 1401 aa14.6□□□□□ -0.07
NEDD8-205ENST00000527046 EYA1Q99502 592 aa14.6□□□□□ -0.07
NEDD8-205ENST00000527046 CARD10Q9BWT7 1032 aa14.6□□□□□ -0.07
NEDD8-205ENST00000527046 CRB1P82279 1406 aa14.59□□□□□ -0.07
NEDD8-205ENST00000527046 FAM208AQ9UK61 1670 aaKnown RBP14.59□□□□□ -0.07
NEDD8-205ENST00000527046 RGPD1P0DJD0 1748 aa14.58□□□□□ -0.07
NEDD8-205ENST00000527046 MYBBP1AQ9BQG0 1328 aaKnown RBP14.58□□□□□ -0.08
NEDD8-205ENST00000527046 RBM6P78332 1123 aaKnown RBP14.57□□□□□ -0.08
NEDD8-205ENST00000527046 BARGINQ6ZT62 677 aa14.57□□□□□ -0.08
NEDD8-205ENST00000527046 TOM1L2Q6ZVM7 507 aa14.57□□□□□ -0.08
NEDD8-205ENST00000527046 DISP2A7MBM2 1401 aa14.57□□□□□ -0.08
NEDD8-205ENST00000527046 ILDR2Q71H61 639 aa14.56□□□□□ -0.08
NEDD8-205ENST00000527046 TCP11L2Q8N4U5 519 aa14.56□□□□□ -0.08
NEDD8-205ENST00000527046 USHBP1Q8N6Y0 703 aa14.56□□□□□ -0.08
NEDD8-205ENST00000527046 NLRP2Q9NX02 1062 aa14.56□□□□□ -0.08
NEDD8-205ENST00000527046 CSB-PGBD3P0DP91 1061 aa14.55□□□□□ -0.08
NEDD8-205ENST00000527046 RXRBP28702 533 aa14.55□□□□□ -0.08
NEDD8-205ENST00000527046 USP35Q9P2H5 1018 aa14.55□□□□□ -0.08
NEDD8-205ENST00000527046 IGSF1Q8N6C5 1336 aa14.55□□□□□ -0.08
NEDD8-205ENST00000527046 DIAPH1O60610 1272 aaKnown RBP14.54□□□□□ -0.08
NEDD8-205ENST00000527046 FAM98CQ17RN3 349 aaKnown RBP14.54□□□□□ -0.08
NEDD8-205ENST00000527046 AEBP1Q8IUX7 1158 aa14.54□□□□□ -0.08
NEDD8-205ENST00000527046 THRAP3Q9Y2W1 955 aaKnown RBP14.54□□□□□ -0.08
NEDD8-205ENST00000527046 THSD7AQ9UPZ6 1657 aa14.54□□□□□ -0.08
NEDD8-205ENST00000527046 CCDC9Q9Y3X0 531 aaKnown RBP14.53□□□□□ -0.08
NEDD8-205ENST00000527046 WNK3Q9BYP7 1800 aa14.52□□□□□ -0.08
NEDD8-205ENST00000527046 KDRP35968 1356 aa14.52□□□□□ -0.08
NEDD8-205ENST00000527046 ANP32CO43423 234 aa14.52□□□□□ -0.09
NEDD8-205ENST00000527046 DIEXFQ68CQ4 756 aaKnown RBP14.52□□□□□ -0.09
NEDD8-205ENST00000527046 MEGF6O75095 1541 aa14.51□□□□□ -0.09
NEDD8-205ENST00000527046 RGS12O14924 1447 aa14.51□□□□□ -0.09
NEDD8-205ENST00000527046 BRWD3Q6RI45 1802 aa14.51□□□□□ -0.09
NEDD8-205ENST00000527046 SEPT12Q8IYM1 358 aa14.51□□□□□ -0.09
NEDD8-205ENST00000527046 PARP4Q9UKK3 1724 aaKnown RBP14.49□□□□□ -0.09
NEDD8-205ENST00000527046 SULT6B1Q6IMI4 303 aa14.49□□□□□ -0.09
NEDD8-205ENST00000527046 MIER1Q8N108 512 aa14.49□□□□□ -0.09
NEDD8-205ENST00000527046 HMOX1P09601 288 aa14.48□□□□□ -0.09
NEDD8-205ENST00000527046 IL2RBP14784 551 aa14.48□□□□□ -0.09
NEDD8-205ENST00000527046 CFAP53Q96M91 514 aa14.48□□□□□ -0.09
NEDD8-205ENST00000527046 SHANK3Q9BYB0 1731 aa14.48□□□□□ -0.09
NEDD8-205ENST00000527046 PNISRQ8TF01 805 aaKnown RBP14.47□□□□□ -0.09
NEDD8-205ENST00000527046 RSPH6AQ9H0K4 717 aa14.47□□□□□ -0.09
NEDD8-205ENST00000527046 LRRC37A3O60309 1634 aa14.47□□□□□ -0.09
NEDD8-205ENST00000527046 U2SURPO15042 1029 aaKnown RBP14.46□□□□□ -0.09
NEDD8-205ENST00000527046 MARCH10Q8NA82 808 aaPredicted RBP14.46□□□□□ -0.09
NEDD8-205ENST00000527046 PHACTR3Q96KR7 559 aa14.46□□□□□ -0.09
NEDD8-205ENST00000527046 PLEKHF1Q96S99 279 aa14.46□□□□□ -0.09
NEDD8-205ENST00000527046 CDCA7Q9BWT1 371 aaPredicted RBP14.46□□□□□ -0.09
NEDD8-205ENST00000527046 OVOS2A0A0G2JMS6 1433 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms