RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 HOXC9P31274 260 aa24.86■■□□□ 1.57
VPS28-207ENST00000526977 ARHGEF25Q86VW2 580 aa24.86■■□□□ 1.57
VPS28-207ENST00000526977 LRRC59Q96AG4 307 aaKnown RBP24.86■■□□□ 1.57
VPS28-207ENST00000526977 UBAP1LF5GYI3 381 aa24.86■■□□□ 1.57
VPS28-207ENST00000526977 PEAK1Q9H792 1746 aa24.86■■□□□ 1.57
VPS28-207ENST00000526977 IP6K1Q92551 441 aa24.85■■□□□ 1.57
VPS28-207ENST00000526977 EIF4A2Q14240 407 aaKnown RBP24.85■■□□□ 1.57
VPS28-207ENST00000526977 PELP1Q8IZL8 1130 aaKnown RBP24.85■■□□□ 1.57
VPS28-207ENST00000526977 RUNDC1Q96C34 613 aa24.85■■□□□ 1.57
VPS28-207ENST00000526977 AHDC1Q5TGY3 1603 aaPredicted RBP24.84■■□□□ 1.57
VPS28-207ENST00000526977 MED1Q15648 1581 aaPredicted RBP24.84■■□□□ 1.57
VPS28-207ENST00000526977 PLEKHG5O94827 1062 aa24.84■■□□□ 1.57
VPS28-207ENST00000526977 FCHSD2O94868 740 aa24.84■■□□□ 1.57
VPS28-207ENST00000526977 CCDC146Q8IYE0 955 aa24.83■■□□□ 1.56
VPS28-207ENST00000526977 PIP4K2BP78356 416 aa24.81■■□□□ 1.56
VPS28-207ENST00000526977 NGEFQ8N5V2 710 aa24.81■■□□□ 1.56
VPS28-207ENST00000526977 CABLES1Q8TDN4 633 aa24.81■■□□□ 1.56
VPS28-207ENST00000526977 PHRF1Q9P1Y6 1649 aaKnown RBP24.8■■□□□ 1.56
VPS28-207ENST00000526977 LTN1O94822 1766 aa24.79■■□□□ 1.56
VPS28-207ENST00000526977 ZNF521Q96K83 1311 aa24.79■■□□□ 1.56
VPS28-207ENST00000526977 ZC3H6P61129 1189 aaKnown RBP24.79■■□□□ 1.56
VPS28-207ENST00000526977 APAF1O14727 1248 aa24.78■■□□□ 1.56
VPS28-207ENST00000526977 PLEKHF1Q96S99 279 aa24.78■■□□□ 1.56
VPS28-207ENST00000526977 PPP4R2Q9NY27 417 aa24.78■■□□□ 1.56
VPS28-207ENST00000526977 ZBTB7CA1YPR0 619 aa24.78■■□□□ 1.56
VPS28-207ENST00000526977 RCAN3Q9UKA8 241 aa24.77■■□□□ 1.56
VPS28-207ENST00000526977 NEFMP07197 916 aa24.76■■□□□ 1.55
VPS28-207ENST00000526977 RSPH6AQ9H0K4 717 aa24.76■■□□□ 1.55
VPS28-207ENST00000526977 CPDO75976 1380 aa24.76■■□□□ 1.55
VPS28-207ENST00000526977 HAP1P54257 671 aaPredicted RBP24.75■■□□□ 1.55
VPS28-207ENST00000526977 NCBP3Q53F19 620 aaKnown RBP24.75■■□□□ 1.55
VPS28-207ENST00000526977 TCP11L2Q8N4U5 519 aa24.75■■□□□ 1.55
VPS28-207ENST00000526977 CRYBG1Q9Y4K1 1723 aa24.75■■□□□ 1.55
VPS28-207ENST00000526977 HMOX1P09601 288 aa24.74■■□□□ 1.55
VPS28-207ENST00000526977 MAPK8IP3Q9UPT6 1336 aa24.74■■□□□ 1.55
VPS28-207ENST00000526977 PRKAR2BP31323 418 aa24.73■■□□□ 1.55
VPS28-207ENST00000526977 SULT6B1Q6IMI4 303 aa24.73■■□□□ 1.55
VPS28-207ENST00000526977 EYA1Q99502 592 aa24.73■■□□□ 1.55
VPS28-207ENST00000526977 IGSF1Q8N6C5 1336 aa24.72■■□□□ 1.55
VPS28-207ENST00000526977 GOLGA2Q08379 1002 aa24.72■■□□□ 1.55
VPS28-207ENST00000526977 LTV1Q96GA3 475 aaPredicted RBP24.71■■□□□ 1.55
VPS28-207ENST00000526977 KIAA0232Q92628 1395 aa24.71■■□□□ 1.55
VPS28-207ENST00000526977 PHLPP1O60346 1717 aa24.71■■□□□ 1.55
VPS28-207ENST00000526977 AXIN2Q9Y2T1 843 aa24.71■■□□□ 1.55
VPS28-207ENST00000526977 ABCC6O95255 1503 aa24.7■■□□□ 1.55
VPS28-207ENST00000526977 RGPD1P0DJD0 1748 aa24.7■■□□□ 1.54
VPS28-207ENST00000526977 RRP1P56182 461 aaKnown RBP24.69■■□□□ 1.54
VPS28-207ENST00000526977 DUSP27Q5VZP5 1158 aa24.69■■□□□ 1.54
VPS28-207ENST00000526977 ANKRD24Q8TF21 1146 aa24.68■■□□□ 1.54
VPS28-207ENST00000526977 COL16A1Q07092 1604 aaPredicted RBP24.68■■□□□ 1.54
VPS28-207ENST00000526977 KDRP35968 1356 aa24.68■■□□□ 1.54
VPS28-207ENST00000526977 SLFN5Q08AF3 891 aa24.68■■□□□ 1.54
VPS28-207ENST00000526977 CCDC27Q2M243 656 aa24.68■■□□□ 1.54
VPS28-207ENST00000526977 PRDM11Q9NQV5 511 aa24.68■■□□□ 1.54
VPS28-207ENST00000526977 AEBP1Q8IUX7 1158 aa24.67■■□□□ 1.54
VPS28-207ENST00000526977 TMPOP42166 694 aaKnown RBP24.66■■□□□ 1.54
VPS28-207ENST00000526977 TRMT2AQ8IZ69 625 aaKnown RBP24.66■■□□□ 1.54
VPS28-207ENST00000526977 COL22A1Q8NFW1 1626 aaPredicted RBP24.66■■□□□ 1.54
VPS28-207ENST00000526977 CHRNA2Q15822 529 aa24.66■■□□□ 1.54
VPS28-207ENST00000526977 NEUROD2Q15784 382 aa24.65■■□□□ 1.54
VPS28-207ENST00000526977 PHACTR3Q96KR7 559 aa24.65■■□□□ 1.54
VPS28-207ENST00000526977 ERBB3P21860 1342 aa24.65■■□□□ 1.54
VPS28-207ENST00000526977 NBPF6Q5VWK0 638 aa24.64■■□□□ 1.54
VPS28-207ENST00000526977 NBPF4Q96M43 638 aa24.64■■□□□ 1.54
VPS28-207ENST00000526977 RRP7AQ9Y3A4 280 aaKnown RBP24.64■■□□□ 1.54
VPS28-207ENST00000526977 PHF23Q9BUL5 403 aaPredicted RBP24.64■■□□□ 1.53
VPS28-207ENST00000526977 ABCA3Q99758 1704 aa24.64■■□□□ 1.53
VPS28-207ENST00000526977 COL18A1P39060 1754 aa24.64■■□□□ 1.53
VPS28-207ENST00000526977 WWC1Q8IX03 1113 aa24.63■■□□□ 1.53
VPS28-207ENST00000526977 B4GALNT3Q6L9W6 998 aa24.62■■□□□ 1.53
VPS28-207ENST00000526977 SPINK5Q9NQ38 1064 aaPredicted RBP24.62■■□□□ 1.53
VPS28-207ENST00000526977 NFE2L2Q16236 605 aa24.62■■□□□ 1.53
VPS28-207ENST00000526977 RIPK4P57078 832 aa24.61■■□□□ 1.53
VPS28-207ENST00000526977 TSHZ2Q9NRE2 1034 aa24.6■■□□□ 1.53
VPS28-207ENST00000526977 WDR63Q8IWG1 891 aa24.59■■□□□ 1.53
VPS28-207ENST00000526977 FAM83GA6ND36 823 aa24.59■■□□□ 1.53
VPS28-207ENST00000526977 E9PSI1 815 aa24.58■■□□□ 1.53
VPS28-207ENST00000526977 CSB-PGBD3P0DP91 1061 aa24.58■■□□□ 1.53
VPS28-207ENST00000526977 NCAPD2Q15021 1401 aa24.57■■□□□ 1.52
VPS28-207ENST00000526977 RGPD5Q99666 1765 aa24.57■■□□□ 1.52
VPS28-207ENST00000526977 USHBP1Q8N6Y0 703 aa24.57■■□□□ 1.52
VPS28-207ENST00000526977 JCADQ9P266 1359 aa24.56■■□□□ 1.52
VPS28-207ENST00000526977 TRIM35Q9UPQ4 493 aa24.56■■□□□ 1.52
VPS28-207ENST00000526977 LMOD3Q0VAK6 560 aa24.56■■□□□ 1.52
VPS28-207ENST00000526977 NLRP2Q9NX02 1062 aa24.56■■□□□ 1.52
VPS28-207ENST00000526977 LMO7Q8WWI1 1683 aa24.55■■□□□ 1.52
VPS28-207ENST00000526977 CAMTA1Q9Y6Y1 1673 aa24.55■■□□□ 1.52
VPS28-207ENST00000526977 GAS2L2Q8NHY3 880 aa24.54■■□□□ 1.52
VPS28-207ENST00000526977 WDR17Q8IZU2 1322 aa24.54■■□□□ 1.52
VPS28-207ENST00000526977 PLIN1O60240 522 aa24.54■■□□□ 1.52
VPS28-207ENST00000526977 EVA1CP58658 441 aa24.52■■□□□ 1.52
VPS28-207ENST00000526977 FAM208AQ9UK61 1670 aaKnown RBP24.52■■□□□ 1.52
VPS28-207ENST00000526977 COL5A2P05997 1499 aaPredicted RBP24.52■■□□□ 1.52
VPS28-207ENST00000526977 MTHFSDQ2M296 383 aaKnown RBP24.52■■□□□ 1.52
VPS28-207ENST00000526977 EXOC6Q8TAG9 804 aa24.52■■□□□ 1.52
VPS28-207ENST00000526977 RGPD2P0DJD1 1756 aa24.5■■□□□ 1.51
VPS28-207ENST00000526977 CALD1Q05682 793 aaKnown RBP24.5■■□□□ 1.51
VPS28-207ENST00000526977 AMOTQ4VCS5 1084 aa24.5■■□□□ 1.51
VPS28-207ENST00000526977 BTG4Q9NY30 223 aa24.5■■□□□ 1.51
VPS28-207ENST00000526977 CCDC136Q96JN2 1154 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms