RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 PCDHB9Q9Y5E1 797 aa9.96□□□□□ -0.82
CD44-223ENST00000526553 CTC1Q2NKJ3 1217 aa9.95□□□□□ -0.82
CD44-223ENST00000526553 CRIPAKQ8N1N5 446 aa9.95□□□□□ -0.82
CD44-223ENST00000526553 HPS1Q92902 700 aa9.95□□□□□ -0.82
CD44-223ENST00000526553 SMCPP49901 116 aaPredicted RBP9.94□□□□□ -0.82
CD44-223ENST00000526553 MYT1Q01538 1121 aa9.94□□□□□ -0.82
CD44-223ENST00000526553 ESPNB1AK53 854 aa9.93□□□□□ -0.82
CD44-223ENST00000526553 EIF4G2P78344 907 aaKnown RBP eCLIP9.93□□□□□ -0.82
CD44-223ENST00000526553 VAC14Q08AM6 782 aa9.93□□□□□ -0.82
CD44-223ENST00000526553 A6NJR5 290 aa9.92□□□□□ -0.82
CD44-223ENST00000526553 NR3C2P08235 984 aa9.92□□□□□ -0.82
CD44-223ENST00000526553 INTS6LQ5JSJ4 861 aaKnown RBP9.92□□□□□ -0.82
CD44-223ENST00000526553 SEPT12Q8IYM1 358 aa9.92□□□□□ -0.82
CD44-223ENST00000526553 CLUAP1Q96AJ1 413 aa9.92□□□□□ -0.82
CD44-223ENST00000526553 LCE2BO14633 110 aa9.91□□□□□ -0.82
CD44-223ENST00000526553 SOX11P35716 441 aa9.91□□□□□ -0.82
CD44-223ENST00000526553 TRAF7Q6Q0C0 670 aa9.91□□□□□ -0.82
CD44-223ENST00000526553 CCDC116Q8IYX3 515 aa9.91□□□□□ -0.82
CD44-223ENST00000526553 DHX9Q08211 1270 aaKnown RBP9.9□□□□□ -0.82
CD44-223ENST00000526553 PROSER2Q86WR7 435 aaPredicted RBP9.9□□□□□ -0.82
CD44-223ENST00000526553 KLF16Q9BXK1 252 aaPredicted RBP9.9□□□□□ -0.82
CD44-223ENST00000526553 AXIN1O15169 862 aa9.89□□□□□ -0.83
CD44-223ENST00000526553 TIMP2P16035 220 aa9.89□□□□□ -0.83
CD44-223ENST00000526553 CCDC125Q86Z20 511 aa9.89□□□□□ -0.83
CD44-223ENST00000526553 FNBP4Q8N3X1 1017 aaPredicted RBP9.89□□□□□ -0.83
CD44-223ENST00000526553 AAASQ9NRG9 546 aa9.89□□□□□ -0.83
CD44-223ENST00000526553 EMILIN1Q9Y6C2 1016 aa9.89□□□□□ -0.83
CD44-223ENST00000526553 WDR4P57081 412 aaKnown RBP9.88□□□□□ -0.83
CD44-223ENST00000526553 RNF20Q5VTR2 975 aa9.87□□□□□ -0.83
CD44-223ENST00000526553 ST8SIA5O15466 376 aa9.86□□□□□ -0.83
CD44-223ENST00000526553 CAPN5O15484 640 aaPredicted RBP9.86□□□□□ -0.83
CD44-223ENST00000526553 GIGYF1O75420 1035 aaPredicted RBP9.86□□□□□ -0.83
CD44-223ENST00000526553 ZIC2O95409 532 aaPredicted RBP9.86□□□□□ -0.83
CD44-223ENST00000526553 PPP1R26Q5T8A7 1209 aaPredicted RBP9.86□□□□□ -0.83
CD44-223ENST00000526553 ITPKCQ96DU7 683 aa9.86□□□□□ -0.83
CD44-223ENST00000526553 PGPEP1Q9NXJ5 209 aa9.86□□□□□ -0.83
CD44-223ENST00000526553 CEP126Q9P2H0 1117 aa9.86□□□□□ -0.83
CD44-223ENST00000526553 ERVH48-1M5A8F1 160 aa9.84□□□□□ -0.83
CD44-223ENST00000526553 SEMA3FQ13275 785 aa9.84□□□□□ -0.83
CD44-223ENST00000526553 TRIM52Q96A61 297 aa9.84□□□□□ -0.83
CD44-223ENST00000526553 ZFAND3Q9H8U3 227 aa9.84□□□□□ -0.83
CD44-223ENST00000526553 RAB15P59190 212 aa9.83□□□□□ -0.84
CD44-223ENST00000526553 ALG2Q9H553 416 aa9.83□□□□□ -0.84
CD44-223ENST00000526553 POM121CA8CG34 1229 aa9.82□□□□□ -0.84
CD44-223ENST00000526553 SLFNL1Q499Z3 407 aa9.81□□□□□ -0.84
CD44-223ENST00000526553 MEIOBQ8N635 442 aa9.81□□□□□ -0.84
CD44-223ENST00000526553 PHTF2Q8N3S3 785 aa9.8□□□□□ -0.84
CD44-223ENST00000526553 ZNF784Q8NCA9 323 aaPredicted RBP9.8□□□□□ -0.84
CD44-223ENST00000526553 ATP13A2Q9NQ11 1180 aa9.8□□□□□ -0.84
CD44-223ENST00000526553 TMPRSS4Q9NRS4 437 aa9.8□□□□□ -0.84
CD44-223ENST00000526553 Q6ZVU0 165 aa9.79□□□□□ -0.84
CD44-223ENST00000526553 RNF135Q8IUD6 432 aa9.79□□□□□ -0.84
CD44-223ENST00000526553 ADAMTS19Q8TE59 1207 aa9.79□□□□□ -0.84
CD44-223ENST00000526553 DACH1Q9UI36 760 aa9.79□□□□□ -0.84
CD44-223ENST00000526553 CHIC2Q9UKJ5 165 aa9.79□□□□□ -0.84
CD44-223ENST00000526553 TRAK2O60296 914 aa9.78□□□□□ -0.84
CD44-223ENST00000526553 LILRA1O75019 489 aa9.78□□□□□ -0.84
CD44-223ENST00000526553 ZMYND15Q9H091 742 aa9.78□□□□□ -0.84
CD44-223ENST00000526553 PCDHB11Q9Y5F2 797 aa9.78□□□□□ -0.84
CD44-223ENST00000526553 ERVK-9P63128 1117 aa9.77□□□□□ -0.85
CD44-223ENST00000526553 MRPL14Q6P1L8 145 aaKnown RBP9.77□□□□□ -0.85
CD44-223ENST00000526553 TRIM46Q7Z4K8 759 aa9.77□□□□□ -0.85
CD44-223ENST00000526553 CCDC85AQ96PX6 553 aaPredicted RBP9.77□□□□□ -0.85
CD44-223ENST00000526553 BMP1P13497 986 aa9.76□□□□□ -0.85
CD44-223ENST00000526553 CBLBQ13191 982 aa9.76□□□□□ -0.85
CD44-223ENST00000526553 CC2D2BQ6DHV5 1058 aa9.76□□□□□ -0.85
CD44-223ENST00000526553 CYLDQ9NQC7 956 aa9.76□□□□□ -0.85
CD44-223ENST00000526553 SCARF1Q14162 830 aa9.75□□□□□ -0.85
CD44-223ENST00000526553 HDGFL1Q5TGJ6 251 aa9.75□□□□□ -0.85
CD44-223ENST00000526553 NFATC2IPQ8NCF5 419 aa9.75□□□□□ -0.85
CD44-223ENST00000526553 GLMNQ92990 594 aa9.75□□□□□ -0.85
CD44-223ENST00000526553 DOLKQ9UPQ8 538 aa9.75□□□□□ -0.85
CD44-223ENST00000526553 UPP2O95045 317 aa9.74□□□□□ -0.85
CD44-223ENST00000526553 ADH1AP07327 375 aa9.74□□□□□ -0.85
CD44-223ENST00000526553 MAP7D1Q3KQU3 841 aa9.74□□□□□ -0.85
CD44-223ENST00000526553 LINC00528Q8N1L1 170 aa9.74□□□□□ -0.85
CD44-223ENST00000526553 PLPP7Q8NBV4 271 aa9.74□□□□□ -0.85
CD44-223ENST00000526553 TSEN34Q9BSV6 310 aaKnown RBP9.74□□□□□ -0.85
CD44-223ENST00000526553 SENP2Q9HC62 589 aa9.74□□□□□ -0.85
CD44-223ENST00000526553 PIK3CDO00329 1044 aa9.73□□□□□ -0.85
CD44-223ENST00000526553 ADD1P35611 737 aaKnown RBP9.73□□□□□ -0.85
CD44-223ENST00000526553 KIFC2Q96AC6 838 aa9.73□□□□□ -0.85
CD44-223ENST00000526553 GMPR2Q9P2T1 348 aaKnown RBP9.73□□□□□ -0.85
CD44-223ENST00000526553 SCTRP47872 440 aa9.72□□□□□ -0.85
CD44-223ENST00000526553 ERICH6Q7L0X2 663 aa9.72□□□□□ -0.85
CD44-223ENST00000526553 C14orf37Q86TY3 774 aa9.72□□□□□ -0.85
CD44-223ENST00000526553 UCN2Q96RP3 112 aa9.72□□□□□ -0.85
CD44-223ENST00000526553 CDCA7Q9BWT1 371 aaPredicted RBP9.72□□□□□ -0.85
CD44-223ENST00000526553 MYCP01106 439 aaPredicted RBP9.71□□□□□ -0.86
CD44-223ENST00000526553 TSGA10IPQ3SY00 556 aa9.71□□□□□ -0.86
CD44-223ENST00000526553 CALR3Q96L12 384 aaKnown RBP9.71□□□□□ -0.86
CD44-223ENST00000526553 TRIM47Q96LD4 638 aa9.71□□□□□ -0.86
CD44-223ENST00000526553 ZFP42Q96MM3 310 aa9.71□□□□□ -0.86
CD44-223ENST00000526553 PURBQ96QR8 312 aaKnown RBP9.71□□□□□ -0.86
CD44-223ENST00000526553 LZTS3O60299 673 aaPredicted RBP9.7□□□□□ -0.86
CD44-223ENST00000526553 CYP2U1Q7Z449 544 aa9.7□□□□□ -0.86
CD44-223ENST00000526553 SIRT1Q96EB6 747 aa9.7□□□□□ -0.86
CD44-223ENST00000526553 OSBPL3Q9H4L5 887 aa9.7□□□□□ -0.86
CD44-223ENST00000526553 SPINT1O43278 529 aa9.69□□□□□ -0.86
CD44-223ENST00000526553 BMP2P12643 396 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms