RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ATP5J2-PTCD1G3V325 749 aa8.19□□□□□ -1.1
CD44-220ENST00000525688 NCOA4Q13772 614 aa8.19□□□□□ -1.1
CD44-220ENST00000525688 DEPDC4Q8N2C3 294 aa8.19□□□□□ -1.1
CD44-220ENST00000525688 FOXJ1Q92949 421 aa8.19□□□□□ -1.1
CD44-220ENST00000525688 MAGEB6P1A0A0J9YX57 407 aa8.18□□□□□ -1.1
CD44-220ENST00000525688 SH3BP2P78314 561 aa8.18□□□□□ -1.1
CD44-220ENST00000525688 KCNC4Q03721 635 aa8.18□□□□□ -1.1
CD44-220ENST00000525688 CCDC125Q86Z20 511 aa8.18□□□□□ -1.1
CD44-220ENST00000525688 TRMT44Q8IYL2 757 aaKnown RBP8.18□□□□□ -1.1
CD44-220ENST00000525688 ZMIZ1Q9ULJ6 1067 aa8.18□□□□□ -1.1
CD44-220ENST00000525688 PTK7Q13308 1070 aa8.17□□□□□ -1.1
CD44-220ENST00000525688 AGERQ15109 404 aa8.17□□□□□ -1.1
CD44-220ENST00000525688 EML3Q32P44 896 aa8.17□□□□□ -1.1
CD44-220ENST00000525688 LINC01559Q495D7 138 aa8.17□□□□□ -1.1
CD44-220ENST00000525688 RNF20Q5VTR2 975 aa8.17□□□□□ -1.1
CD44-220ENST00000525688 CARD14Q9BXL6 1004 aa8.17□□□□□ -1.1
CD44-220ENST00000525688 CDV3Q9UKY7 258 aaKnown RBP8.17□□□□□ -1.1
CD44-220ENST00000525688 NOVA2Q9UNW9 492 aaKnown RBP8.17□□□□□ -1.1
CD44-220ENST00000525688 CCDC9Q9Y3X0 531 aaKnown RBP8.17□□□□□ -1.1
CD44-220ENST00000525688 CARNS1A5YM72 827 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 ESPNB1AK53 854 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L15C9J2P7 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L10C9JJH3 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L13C9JLJ4 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L12C9JPN9 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L11C9JVI0 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L21D6R901 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L18D6R9N7 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L22D6RA61 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L17D6RBQ6 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L19D6RCP7 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L20D6RJB6 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 GIGYF1O75420 1035 aaPredicted RBP8.16□□□□□ -1.1
CD44-220ENST00000525688 USP17L24Q0WX57 530 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 TSGA10IPQ3SY00 556 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 CRTC2Q53ET0 693 aaPredicted RBP8.16□□□□□ -1.1
CD44-220ENST00000525688 LARP1Q6PKG0 1096 aaKnown RBP8.16□□□□□ -1.1
CD44-220ENST00000525688 ANKLE1Q8NAG6 615 aa8.16□□□□□ -1.1
CD44-220ENST00000525688 RNF223E7ERA6 249 aa8.15□□□□□ -1.1
CD44-220ENST00000525688 PPEF1O14829 653 aaPredicted RBP8.15□□□□□ -1.1
CD44-220ENST00000525688 RASA1P20936 1047 aa8.15□□□□□ -1.1
CD44-220ENST00000525688 NBPF20Q3BBV1 942 aa8.15□□□□□ -1.1
CD44-220ENST00000525688 TMEM164Q5U3C3 297 aa8.15□□□□□ -1.1
CD44-220ENST00000525688 SEPT12Q8IYM1 358 aa8.15□□□□□ -1.1
CD44-220ENST00000525688 SLC10A4Q96EP9 437 aa8.15□□□□□ -1.1
CD44-220ENST00000525688 CCDC85AQ96PX6 553 aaPredicted RBP8.15□□□□□ -1.1
CD44-220ENST00000525688 ZBTB24O43167 697 aaPredicted RBP8.14□□□□□ -1.11
CD44-220ENST00000525688 GGCXP38435 758 aa8.14□□□□□ -1.11
CD44-220ENST00000525688 RANGAP1P46060 587 aaPredicted RBP8.14□□□□□ -1.11
CD44-220ENST00000525688 B4GALNT3Q6L9W6 998 aa8.14□□□□□ -1.11
CD44-220ENST00000525688 TRIM50Q86XT4 487 aa8.14□□□□□ -1.11
CD44-220ENST00000525688 STK32AQ8WU08 396 aa8.14□□□□□ -1.11
CD44-220ENST00000525688 CDCA7Q9BWT1 371 aaPredicted RBP8.14□□□□□ -1.11
CD44-220ENST00000525688 PCDH10Q9P2E7 1040 aa8.14□□□□□ -1.11
CD44-220ENST00000525688 DOLKQ9UPQ8 538 aa8.14□□□□□ -1.11
CD44-220ENST00000525688 VARSP26640 1264 aaKnown RBP8.13□□□□□ -1.11
CD44-220ENST00000525688 WNT7BP56706 349 aa8.13□□□□□ -1.11
CD44-220ENST00000525688 TRIM32Q13049 653 aa8.13□□□□□ -1.11
CD44-220ENST00000525688 OGFOD1Q8N543 542 aa8.13□□□□□ -1.11
CD44-220ENST00000525688 RNF166Q96A37 237 aaPredicted RBP8.13□□□□□ -1.11
CD44-220ENST00000525688 NOD1Q9Y239 953 aa8.13□□□□□ -1.11
CD44-220ENST00000525688 RPIAP49247 311 aa8.12□□□□□ -1.11
CD44-220ENST00000525688 ATP1A2P50993 1020 aa8.12□□□□□ -1.11
CD44-220ENST00000525688 CLDN10P78369 228 aa8.12□□□□□ -1.11
CD44-220ENST00000525688 FAM69CQ0P6D2 419 aa8.12□□□□□ -1.11
CD44-220ENST00000525688 ANKMY2Q8IV38 441 aa8.12□□□□□ -1.11
CD44-220ENST00000525688 LARGE2Q8N3Y3 721 aa8.12□□□□□ -1.11
CD44-220ENST00000525688 FAM200AQ8TCP9 573 aa8.12□□□□□ -1.11
CD44-220ENST00000525688 GZF1Q9H116 711 aaPredicted RBP8.12□□□□□ -1.11
CD44-220ENST00000525688 MAP4K5Q9Y4K4 846 aa8.12□□□□□ -1.11
CD44-220ENST00000525688 DKK1O94907 266 aa8.11□□□□□ -1.11
CD44-220ENST00000525688 PLA2G2CQ5R387 149 aa8.11□□□□□ -1.11
CD44-220ENST00000525688 SIX5Q8N196 739 aa8.11□□□□□ -1.11
CD44-220ENST00000525688 SIRT1Q96EB6 747 aa8.11□□□□□ -1.11
CD44-220ENST00000525688 DNAAF2Q9NVR5 837 aaKnown RBP8.11□□□□□ -1.11
CD44-220ENST00000525688 ZBTB7BO15156 539 aaPredicted RBP8.1□□□□□ -1.11
CD44-220ENST00000525688 SKOR1P84550 965 aa8.1□□□□□ -1.11
CD44-220ENST00000525688 USP4Q13107 963 aa8.1□□□□□ -1.11
CD44-220ENST00000525688 SWI5Q1ZZU3 235 aa8.1□□□□□ -1.11
CD44-220ENST00000525688 PPP1R18Q6NYC8 613 aa8.1□□□□□ -1.11
CD44-220ENST00000525688 SPNS2Q8IVW8 549 aa8.1□□□□□ -1.11
CD44-220ENST00000525688 CLP1Q92989 425 aaKnown RBP8.1□□□□□ -1.11
CD44-220ENST00000525688 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.1□□□□□ -1.11
CD44-220ENST00000525688 GNEQ9Y223 722 aaKnown RBP8.1□□□□□ -1.11
CD44-220ENST00000525688 OXLD1Q5BKU9 147 aa8.09□□□□□ -1.11
CD44-220ENST00000525688 TMCO4Q5TGY1 634 aa8.09□□□□□ -1.11
CD44-220ENST00000525688 KCTD15Q96SI1 283 aaPredicted RBP8.09□□□□□ -1.11
CD44-220ENST00000525688 SSFA2P28290 1259 aa8.08□□□□□ -1.12
CD44-220ENST00000525688 GTF2IP78347 998 aa8.08□□□□□ -1.12
CD44-220ENST00000525688 DPYDQ12882 1025 aa8.08□□□□□ -1.12
CD44-220ENST00000525688 PCDHB11Q9Y5F2 797 aa8.08□□□□□ -1.12
CD44-220ENST00000525688 PCDHGA11Q9Y5H2 935 aa8.08□□□□□ -1.12
CD44-220ENST00000525688 CD2BP2O95400 341 aaKnown RBP8.07□□□□□ -1.12
CD44-220ENST00000525688 PHLDB3Q6NSJ2 640 aa8.07□□□□□ -1.12
CD44-220ENST00000525688 MPNDQ8N594 471 aa8.07□□□□□ -1.12
CD44-220ENST00000525688 CDK15Q96Q40 435 aa8.07□□□□□ -1.12
CD44-220ENST00000525688 SLAIN2Q9P270 581 aa8.07□□□□□ -1.12
CD44-220ENST00000525688 KIAA1024Q9UPX6 916 aa8.07□□□□□ -1.12
CD44-220ENST00000525688 CCDC102BQ68D86 513 aa8.06□□□□□ -1.12
CD44-220ENST00000525688 TXNDC2Q86VQ3 553 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms