RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 KDM4CQ9H3R0 1056 aa11.96□□□□□ -0.49
NEDD8-203ENST00000524927 MYO5CQ9NQX4 1742 aa11.96□□□□□ -0.49
NEDD8-203ENST00000524927 RBM6P78332 1123 aaKnown RBP11.95□□□□□ -0.5
NEDD8-203ENST00000524927 XIRP1Q702N8 1843 aaKnown RBP11.95□□□□□ -0.5
NEDD8-203ENST00000524927 DAXXQ9UER7 740 aaPredicted RBP11.94□□□□□ -0.5
NEDD8-203ENST00000524927 PHLPP1O60346 1717 aa11.94□□□□□ -0.5
NEDD8-203ENST00000524927 TNRQ92752 1358 aa11.93□□□□□ -0.5
NEDD8-203ENST00000524927 IL27Q8NEV9 243 aa11.93□□□□□ -0.5
NEDD8-203ENST00000524927 V9GY48 417 aaPredicted RBP11.93□□□□□ -0.5
NEDD8-203ENST00000524927 SAMD9Q5K651 1589 aa11.92□□□□□ -0.5
NEDD8-203ENST00000524927 KIDINS220Q9ULH0 1771 aa11.92□□□□□ -0.5
NEDD8-203ENST00000524927 ITSN2Q9NZM3 1697 aa11.92□□□□□ -0.5
NEDD8-203ENST00000524927 HDGFP51858 240 aaKnown RBP11.92□□□□□ -0.5
NEDD8-203ENST00000524927 EMID1Q96A84 441 aaPredicted RBP11.92□□□□□ -0.5
NEDD8-203ENST00000524927 FAM135AQ9P2D6 1515 aa11.91□□□□□ -0.5
NEDD8-203ENST00000524927 SENP3-EIF4A1A0A087X0R7 540 aa11.91□□□□□ -0.5
NEDD8-203ENST00000524927 NRG2O14511 850 aaPredicted RBP11.91□□□□□ -0.5
NEDD8-203ENST00000524927 ARHGAP5Q13017 1502 aa11.91□□□□□ -0.5
NEDD8-203ENST00000524927 COL16A1Q07092 1604 aaPredicted RBP11.9□□□□□ -0.5
NEDD8-203ENST00000524927 AFF2P51816 1311 aa11.89□□□□□ -0.51
NEDD8-203ENST00000524927 NHSL1Q5SYE7 1610 aa11.89□□□□□ -0.51
NEDD8-203ENST00000524927 NLRP1Q9C000 1473 aa11.89□□□□□ -0.51
NEDD8-203ENST00000524927 UGGT1Q9NYU2 1555 aa11.88□□□□□ -0.51
NEDD8-203ENST00000524927 ZPR1O75312 459 aa11.88□□□□□ -0.51
NEDD8-203ENST00000524927 FAM161AQ3B820 660 aa11.88□□□□□ -0.51
NEDD8-203ENST00000524927 ERICH6Q7L0X2 663 aa11.88□□□□□ -0.51
NEDD8-203ENST00000524927 SLF2Q8IX21 1173 aa11.88□□□□□ -0.51
NEDD8-203ENST00000524927 NGLY1Q96IV0 654 aa11.88□□□□□ -0.51
NEDD8-203ENST00000524927 TIMELESSQ9UNS1 1208 aa11.88□□□□□ -0.51
NEDD8-203ENST00000524927 ZC3H13Q5T200 1668 aaKnown RBP11.87□□□□□ -0.51
NEDD8-203ENST00000524927 ATP7AQ04656 1500 aa11.87□□□□□ -0.51
NEDD8-203ENST00000524927 AMHR2Q16671 573 aa11.87□□□□□ -0.51
NEDD8-203ENST00000524927 QTRT2Q9H974 415 aaKnown RBP11.87□□□□□ -0.51
NEDD8-203ENST00000524927 TMEM94Q12767 1356 aa11.87□□□□□ -0.51
NEDD8-203ENST00000524927 TTLL12Q14166 644 aaPredicted RBP11.86□□□□□ -0.51
NEDD8-203ENST00000524927 GGT6Q6P531 493 aa11.86□□□□□ -0.51
NEDD8-203ENST00000524927 EP400Q96L91 3159 aa11.85□□□□□ -0.51
NEDD8-203ENST00000524927 SHPRHQ149N8 1683 aa11.85□□□□□ -0.51
NEDD8-203ENST00000524927 NWD1Q149M9 1564 aa11.85□□□□□ -0.51
NEDD8-203ENST00000524927 BLOC1S3Q6QNY0 202 aa11.85□□□□□ -0.51
NEDD8-203ENST00000524927 TRIM67Q6ZTA4 783 aa11.85□□□□□ -0.51
NEDD8-203ENST00000524927 SLAIN2Q9P270 581 aa11.85□□□□□ -0.51
NEDD8-203ENST00000524927 PDZRN3Q9UPQ7 1066 aa11.85□□□□□ -0.51
NEDD8-203ENST00000524927 PLXNC1O60486 1568 aa11.84□□□□□ -0.51
NEDD8-203ENST00000524927 FBXO31Q5XUX0 539 aaPredicted RBP11.84□□□□□ -0.51
NEDD8-203ENST00000524927 KIF14Q15058 1648 aa11.84□□□□□ -0.51
NEDD8-203ENST00000524927 TLL1O43897 1013 aa11.83□□□□□ -0.52
NEDD8-203ENST00000524927 PARP9Q8IXQ6 854 aa11.83□□□□□ -0.52
NEDD8-203ENST00000524927 PZPP20742 1482 aa11.83□□□□□ -0.52
NEDD8-203ENST00000524927 MAP3K1Q13233 1512 aa11.82□□□□□ -0.52
NEDD8-203ENST00000524927 RNF223E7ERA6 249 aa11.82□□□□□ -0.52
NEDD8-203ENST00000524927 FAM117AQ9C073 453 aa11.82□□□□□ -0.52
NEDD8-203ENST00000524927 MIA2Q96PC5 1412 aa11.82□□□□□ -0.52
NEDD8-203ENST00000524927 PPEF1O14829 653 aaPredicted RBP11.81□□□□□ -0.52
NEDD8-203ENST00000524927 C14orf37Q86TY3 774 aa11.81□□□□□ -0.52
NEDD8-203ENST00000524927 PCDHB3Q9Y5E6 796 aa11.81□□□□□ -0.52
NEDD8-203ENST00000524927 ADGRG1Q9Y653 693 aa11.81□□□□□ -0.52
NEDD8-203ENST00000524927 HRCP23327 699 aa11.8□□□□□ -0.52
NEDD8-203ENST00000524927 DDRGK1Q96HY6 314 aa11.8□□□□□ -0.52
NEDD8-203ENST00000524927 A2MP01023 1474 aa11.8□□□□□ -0.52
NEDD8-203ENST00000524927 PRXQ9BXM0 1461 aa11.8□□□□□ -0.52
NEDD8-203ENST00000524927 TMUB1Q9BVT8 246 aa11.79□□□□□ -0.52
NEDD8-203ENST00000524927 MSH6P52701 1360 aa11.79□□□□□ -0.52
NEDD8-203ENST00000524927 TMEM134Q9H6X4 195 aa11.78□□□□□ -0.52
NEDD8-203ENST00000524927 SAMD9LQ8IVG5 1584 aa11.78□□□□□ -0.52
NEDD8-203ENST00000524927 SCAF11Q99590 1463 aaKnown RBP11.77□□□□□ -0.52
NEDD8-203ENST00000524927 ABCC3O15438 1527 aa11.77□□□□□ -0.52
NEDD8-203ENST00000524927 RCCD1A6NED2 376 aa11.77□□□□□ -0.53
NEDD8-203ENST00000524927 SLC10A3P09131 477 aa11.77□□□□□ -0.53
NEDD8-203ENST00000524927 C1QTNF8P60827 252 aa11.77□□□□□ -0.53
NEDD8-203ENST00000524927 CDK11AQ9UQ88 783 aaPredicted RBP11.77□□□□□ -0.53
NEDD8-203ENST00000524927 SPAG9O60271 1321 aaKnown RBP11.77□□□□□ -0.53
NEDD8-203ENST00000524927 AHDC1Q5TGY3 1603 aaPredicted RBP11.76□□□□□ -0.53
NEDD8-203ENST00000524927 DNAJB2P25686 324 aa11.76□□□□□ -0.53
NEDD8-203ENST00000524927 GGCXP38435 758 aa11.76□□□□□ -0.53
NEDD8-203ENST00000524927 GIGYF2Q6Y7W6 1299 aaKnown RBP11.76□□□□□ -0.53
NEDD8-203ENST00000524927 PROSER2Q86WR7 435 aaPredicted RBP11.76□□□□□ -0.53
NEDD8-203ENST00000524927 NECTIN2Q92692 538 aa11.76□□□□□ -0.53
NEDD8-203ENST00000524927 BLMP54132 1417 aaPredicted RBP11.76□□□□□ -0.53
NEDD8-203ENST00000524927 BCL9LQ86UU0 1499 aa11.76□□□□□ -0.53
NEDD8-203ENST00000524927 CDC42BPBQ9Y5S2 1711 aa11.75□□□□□ -0.53
NEDD8-203ENST00000524927 OATP04181 439 aa11.75□□□□□ -0.53
NEDD8-203ENST00000524927 KCNA6P17658 529 aa11.75□□□□□ -0.53
NEDD8-203ENST00000524927 CLCN1P35523 988 aa11.75□□□□□ -0.53
NEDD8-203ENST00000524927 SLC19A1P41440 591 aa11.75□□□□□ -0.53
NEDD8-203ENST00000524927 ZNF787Q6DD87 383 aa11.75□□□□□ -0.53
NEDD8-203ENST00000524927 PRDM15P57071 1507 aaPredicted RBP11.75□□□□□ -0.53
NEDD8-203ENST00000524927 TIAM1Q13009 1591 aa11.75□□□□□ -0.53
NEDD8-203ENST00000524927 MDM2Q00987 491 aaPredicted RBP11.74□□□□□ -0.53
NEDD8-203ENST00000524927 LIAT1Q6ZQX7 453 aa11.74□□□□□ -0.53
NEDD8-203ENST00000524927 SUPT5HO00267 1087 aaKnown RBP11.73□□□□□ -0.53
NEDD8-203ENST00000524927 S1PR4O95977 384 aa11.73□□□□□ -0.53
NEDD8-203ENST00000524927 C8orf37Q96NL8 207 aa11.73□□□□□ -0.53
NEDD8-203ENST00000524927 PLEKHG3A1L390 1219 aa11.72□□□□□ -0.53
NEDD8-203ENST00000524927 ACTN4O43707 911 aaKnown RBP11.72□□□□□ -0.53
NEDD8-203ENST00000524927 SPRYD7Q5W111 196 aa11.72□□□□□ -0.53
NEDD8-203ENST00000524927 REPIN1Q9BWE0 567 aaKnown RBP11.72□□□□□ -0.53
NEDD8-203ENST00000524927 GPCPD1Q9NPB8 672 aa11.72□□□□□ -0.53
NEDD8-203ENST00000524927 DIP2AQ14689 1571 aa11.71□□□□□ -0.53
NEDD8-203ENST00000524927 TROQ12816 1431 aaPredicted RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms