RNA–Protein interactions for RNA: ENST00000524454.1

VPS11-201, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 626 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-201ENST00000524454 PIK3C2AO00443 1686 aa9.67□□□□□ -0.86
VPS11-201ENST00000524454 NRKQ7Z2Y5 1582 aa9.67□□□□□ -0.86
VPS11-201ENST00000524454 TMF1P82094 1093 aa9.67□□□□□ -0.86
VPS11-201ENST00000524454 FNBP4Q8N3X1 1017 aaPredicted RBP9.67□□□□□ -0.86
VPS11-201ENST00000524454 TESK2Q96S53 571 aa9.67□□□□□ -0.86
VPS11-201ENST00000524454 MON2Q7Z3U7 1717 aa9.67□□□□□ -0.86
VPS11-201ENST00000524454 NWD2Q9ULI1 1742 aa9.67□□□□□ -0.86
VPS11-201ENST00000524454 GLI3P10071 1580 aa9.67□□□□□ -0.86
VPS11-201ENST00000524454 SLIT2O94813 1529 aa9.66□□□□□ -0.86
VPS11-201ENST00000524454 ATRNO75882 1429 aa9.66□□□□□ -0.86
VPS11-201ENST00000524454 COL14A1Q05707 1796 aaKnown RBP9.66□□□□□ -0.86
VPS11-201ENST00000524454 TSPYL2Q9H2G4 693 aaPredicted RBP9.66□□□□□ -0.86
VPS11-201ENST00000524454 PRKRIP1Q9H875 184 aaPredicted RBP9.66□□□□□ -0.86
VPS11-201ENST00000524454 USP6P35125 1406 aa9.65□□□□□ -0.86
VPS11-201ENST00000524454 FAM83GA6ND36 823 aa9.65□□□□□ -0.86
VPS11-201ENST00000524454 ABTB2Q8N961 1025 aa9.65□□□□□ -0.86
VPS11-201ENST00000524454 PUS7Q96PZ0 661 aaKnown RBP9.65□□□□□ -0.86
VPS11-201ENST00000524454 TRPC5Q9UL62 973 aaPredicted RBP9.65□□□□□ -0.86
VPS11-201ENST00000524454 BRWD3Q6RI45 1802 aa9.65□□□□□ -0.86
VPS11-201ENST00000524454 ZC3H6P61129 1189 aaKnown RBP9.64□□□□□ -0.87
VPS11-201ENST00000524454 RBM6P78332 1123 aaKnown RBP9.64□□□□□ -0.87
VPS11-201ENST00000524454 CHRNA2Q15822 529 aa9.64□□□□□ -0.87
VPS11-201ENST00000524454 FAM212AQ96EL1 285 aa9.64□□□□□ -0.87
VPS11-201ENST00000524454 ZRANB1Q9UGI0 708 aa9.64□□□□□ -0.87
VPS11-201ENST00000524454 KIAA0232Q92628 1395 aa9.63□□□□□ -0.87
VPS11-201ENST00000524454 NPC1L1Q9UHC9 1359 aa9.63□□□□□ -0.87
VPS11-201ENST00000524454 ZBTB7CA1YPR0 619 aa9.63□□□□□ -0.87
VPS11-201ENST00000524454 UNC5CLQ8IV45 518 aa9.63□□□□□ -0.87
VPS11-201ENST00000524454 TMC1Q8TDI8 760 aa9.63□□□□□ -0.87
VPS11-201ENST00000524454 BTG4Q9NY30 223 aa9.63□□□□□ -0.87
VPS11-201ENST00000524454 CCDC9Q9Y3X0 531 aaKnown RBP9.63□□□□□ -0.87
VPS11-201ENST00000524454 CD163L1Q9NR16 1453 aa9.63□□□□□ -0.87
VPS11-201ENST00000524454 CDK12Q9NYV4 1490 aaPredicted RBP9.63□□□□□ -0.87
VPS11-201ENST00000524454 RGPD5Q99666 1765 aa9.63□□□□□ -0.87
VPS11-201ENST00000524454 INSRP06213 1382 aa9.63□□□□□ -0.87
VPS11-201ENST00000524454 ATAD2Q6PL18 1390 aa9.63□□□□□ -0.87
VPS11-201ENST00000524454 RALBP1Q15311 655 aa9.62□□□□□ -0.87
VPS11-201ENST00000524454 PRDM11Q9NQV5 511 aa9.62□□□□□ -0.87
VPS11-201ENST00000524454 CPSF1Q10570 1443 aaKnown RBP9.62□□□□□ -0.87
VPS11-201ENST00000524454 SSH2Q76I76 1423 aa9.62□□□□□ -0.87
VPS11-201ENST00000524454 MYOM1P52179 1685 aa9.61□□□□□ -0.87
VPS11-201ENST00000524454 LMO7Q8WWI1 1683 aa9.61□□□□□ -0.87
VPS11-201ENST00000524454 SOX12O15370 315 aa9.61□□□□□ -0.87
VPS11-201ENST00000524454 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.61□□□□□ -0.87
VPS11-201ENST00000524454 ZNF579Q8NAF0 562 aaKnown RBP9.61□□□□□ -0.87
VPS11-201ENST00000524454 GJD4Q96KN9 370 aaPredicted RBP9.61□□□□□ -0.87
VPS11-201ENST00000524454 SLC12A5Q9H2X9 1139 aa9.61□□□□□ -0.87
VPS11-201ENST00000524454 SLIT3O75094 1523 aa9.61□□□□□ -0.87
VPS11-201ENST00000524454 USP19O94966 1318 aa9.6□□□□□ -0.87
VPS11-201ENST00000524454 TTC21BQ7Z4L5 1316 aa9.6□□□□□ -0.87
VPS11-201ENST00000524454 NLRP6P59044 892 aa9.6□□□□□ -0.87
VPS11-201ENST00000524454 PHF12Q96QT6 1004 aa9.6□□□□□ -0.87
VPS11-201ENST00000524454 A0A1W2PP64 1363 aa9.6□□□□□ -0.87
VPS11-201ENST00000524454 BRD4O60885 1362 aaPredicted RBP9.6□□□□□ -0.87
VPS11-201ENST00000524454 PARD3Q8TEW0 1356 aa9.6□□□□□ -0.87
VPS11-201ENST00000524454 NINLQ9Y2I6 1382 aa9.6□□□□□ -0.87
VPS11-201ENST00000524454 CAMTA1Q9Y6Y1 1673 aa9.59□□□□□ -0.87
VPS11-201ENST00000524454 VPS72Q15906 364 aa9.59□□□□□ -0.87
VPS11-201ENST00000524454 DCAF8Q5TAQ9 597 aa9.59□□□□□ -0.87
VPS11-201ENST00000524454 NLRP13Q86W25 1043 aa9.59□□□□□ -0.87
VPS11-201ENST00000524454 STRN4Q9NRL3 753 aa9.59□□□□□ -0.87
VPS11-201ENST00000524454 LTN1O94822 1766 aa9.59□□□□□ -0.87
VPS11-201ENST00000524454 COL18A1P39060 1754 aa9.58□□□□□ -0.88
VPS11-201ENST00000524454 A0A0G2JS52 829 aa9.58□□□□□ -0.88
VPS11-201ENST00000524454 GCP02774 474 aa9.58□□□□□ -0.88
VPS11-201ENST00000524454 MYT1Q01538 1121 aa9.58□□□□□ -0.88
VPS11-201ENST00000524454 GSE1Q14687 1217 aa9.58□□□□□ -0.88
VPS11-201ENST00000524454 NME9Q86XW9 330 aa9.58□□□□□ -0.88
VPS11-201ENST00000524454 CIZ1Q9ULV3 898 aaPredicted RBP9.58□□□□□ -0.88
VPS11-201ENST00000524454 USP54Q70EL1 1684 aa9.58□□□□□ -0.88
VPS11-201ENST00000524454 PER1O15534 1290 aaPredicted RBP9.57□□□□□ -0.88
VPS11-201ENST00000524454 FAM98CQ17RN3 349 aaKnown RBP9.57□□□□□ -0.88
VPS11-201ENST00000524454 HDGFL2Q7Z4V5 671 aaPredicted RBP9.57□□□□□ -0.88
VPS11-201ENST00000524454 UPF1Q92900 1129 aaKnown RBP eCLIP9.57□□□□□ -0.88
VPS11-201ENST00000524454 MYBBP1AQ9BQG0 1328 aaKnown RBP9.56□□□□□ -0.88
VPS11-201ENST00000524454 NFAT5O94916 1531 aa9.56□□□□□ -0.88
VPS11-201ENST00000524454 KIF20BQ96Q89 1820 aa9.56□□□□□ -0.88
VPS11-201ENST00000524454 THSD7AQ9UPZ6 1657 aa9.56□□□□□ -0.88
VPS11-201ENST00000524454 SEPT12Q8IYM1 358 aa9.56□□□□□ -0.88
VPS11-201ENST00000524454 YTHDC1Q96MU7 727 aaKnown RBP9.56□□□□□ -0.88
VPS11-201ENST00000524454 POLR3GLQ9BT43 218 aa9.56□□□□□ -0.88
VPS11-201ENST00000524454 USP35Q9P2H5 1018 aa9.56□□□□□ -0.88
VPS11-201ENST00000524454 EDC4Q6P2E9 1401 aaKnown RBP9.56□□□□□ -0.88
VPS11-201ENST00000524454 TTC21AQ8NDW8 1320 aa9.56□□□□□ -0.88
VPS11-201ENST00000524454 COL5A2P05997 1499 aaPredicted RBP9.55□□□□□ -0.88
VPS11-201ENST00000524454 CPDO75976 1380 aa9.55□□□□□ -0.88
VPS11-201ENST00000524454 WNK3Q9BYP7 1800 aa9.55□□□□□ -0.88
VPS11-201ENST00000524454 LARP1Q6PKG0 1096 aaKnown RBP9.55□□□□□ -0.88
VPS11-201ENST00000524454 TERF2IPQ9NYB0 399 aa9.55□□□□□ -0.88
VPS11-201ENST00000524454 SPATA31A5Q5VU36 1347 aa9.55□□□□□ -0.88
VPS11-201ENST00000524454 SPATA31A7Q8IWB4 1347 aa9.55□□□□□ -0.88
VPS11-201ENST00000524454 PYGBP11216 843 aa9.54□□□□□ -0.88
VPS11-201ENST00000524454 EVA1CP58658 441 aa9.54□□□□□ -0.88
VPS11-201ENST00000524454 FAM182BQ5T319 152 aa9.54□□□□□ -0.88
VPS11-201ENST00000524454 SP7Q8TDD2 431 aaPredicted RBP9.54□□□□□ -0.88
VPS11-201ENST00000524454 KIF12Q96FN5 646 aa9.54□□□□□ -0.88
VPS11-201ENST00000524454 SPATA31A1Q5TZJ5 1347 aa9.54□□□□□ -0.88
VPS11-201ENST00000524454 FBLN1P23142 703 aa9.53□□□□□ -0.88
VPS11-201ENST00000524454 RTN4Q9NQC3 1192 aaKnown RBP9.53□□□□□ -0.88
VPS11-201ENST00000524454 AXIN2Q9Y2T1 843 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms