RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 ARXQ96QS3 562 aa11.33□□□□□ -0.6
SKP1-213ENST00000524288 LCE2AQ5TA79 106 aaPredicted RBP11.32□□□□□ -0.6
SKP1-213ENST00000524288 ZBTB33Q86T24 672 aa11.32□□□□□ -0.6
SKP1-213ENST00000524288 ITPKCQ96DU7 683 aa11.32□□□□□ -0.6
SKP1-213ENST00000524288 SLC10A4Q96EP9 437 aa11.32□□□□□ -0.6
SKP1-213ENST00000524288 HMX1Q9NP08 348 aaPredicted RBP11.31□□□□□ -0.6
SKP1-213ENST00000524288 EMILIN1Q9Y6C2 1016 aa11.31□□□□□ -0.6
SKP1-213ENST00000524288 WFS1O76024 890 aa11.3□□□□□ -0.6
SKP1-213ENST00000524288 CCDC116Q8IYX3 515 aa11.3□□□□□ -0.6
SKP1-213ENST00000524288 ZFP42Q96MM3 310 aa11.3□□□□□ -0.6
SKP1-213ENST00000524288 NFX1Q12986 1120 aaKnown RBP11.29□□□□□ -0.6
SKP1-213ENST00000524288 ZFAND3Q9H8U3 227 aa11.29□□□□□ -0.6
SKP1-213ENST00000524288 EPS8L1Q8TE68 723 aa11.28□□□□□ -0.6
SKP1-213ENST00000524288 TERTO14746 1132 aaKnown RBP11.27□□□□□ -0.61
SKP1-213ENST00000524288 UPP2O95045 317 aa11.27□□□□□ -0.61
SKP1-213ENST00000524288 NPAS3Q8IXF0 933 aa11.27□□□□□ -0.61
SKP1-213ENST00000524288 MEIOBQ8N635 442 aa11.27□□□□□ -0.61
SKP1-213ENST00000524288 SOCS7O14512 581 aa11.26□□□□□ -0.61
SKP1-213ENST00000524288 DHX9Q08211 1270 aaKnown RBP11.26□□□□□ -0.61
SKP1-213ENST00000524288 ADAM32Q8TC27 787 aa11.26□□□□□ -0.61
SKP1-213ENST00000524288 PURBQ96QR8 312 aaKnown RBP11.26□□□□□ -0.61
SKP1-213ENST00000524288 KCTD15Q96SI1 283 aaPredicted RBP11.26□□□□□ -0.61
SKP1-213ENST00000524288 OCSTAMPQ9BR26 566 aa11.26□□□□□ -0.61
SKP1-213ENST00000524288 NBPF20Q3BBV1 942 aa11.25□□□□□ -0.61
SKP1-213ENST00000524288 HOMEZQ8IX15 550 aa11.25□□□□□ -0.61
SKP1-213ENST00000524288 TRIM34Q9BYJ4 488 aa11.25□□□□□ -0.61
SKP1-213ENST00000524288 PGPEP1Q9NXJ5 209 aa11.25□□□□□ -0.61
SKP1-213ENST00000524288 FLIIQ13045 1269 aa11.24□□□□□ -0.61
SKP1-213ENST00000524288 BANK1Q8NDB2 785 aa11.24□□□□□ -0.61
SKP1-213ENST00000524288 NXF1Q9UBU9 619 aaKnown RBP11.24□□□□□ -0.61
SKP1-213ENST00000524288 LINC00528Q8N1L1 170 aa11.23□□□□□ -0.61
SKP1-213ENST00000524288 PPP1R26Q5T8A7 1209 aaPredicted RBP11.22□□□□□ -0.61
SKP1-213ENST00000524288 SLC16A10Q8TF71 515 aa11.22□□□□□ -0.61
SKP1-213ENST00000524288 TSEN34Q9BSV6 310 aaKnown RBP11.22□□□□□ -0.61
SKP1-213ENST00000524288 ARID3CA6NKF2 412 aa11.21□□□□□ -0.61
SKP1-213ENST00000524288 CLUAP1Q96AJ1 413 aa11.21□□□□□ -0.61
SKP1-213ENST00000524288 GJD4Q96KN9 370 aaPredicted RBP11.21□□□□□ -0.61
SKP1-213ENST00000524288 ARID3AQ99856 593 aa11.21□□□□□ -0.61
SKP1-213ENST00000524288 APBB1O00213 710 aa11.2□□□□□ -0.62
SKP1-213ENST00000524288 WIPF1O43516 503 aa11.19□□□□□ -0.62
SKP1-213ENST00000524288 BMP2P12643 396 aa11.19□□□□□ -0.62
SKP1-213ENST00000524288 INTS6LQ5JSJ4 861 aaKnown RBP11.19□□□□□ -0.62
SKP1-213ENST00000524288 Q6ZVU0 165 aa11.19□□□□□ -0.62
SKP1-213ENST00000524288 DZIP3Q86Y13 1208 aaKnown RBP11.19□□□□□ -0.62
SKP1-213ENST00000524288 MCM6Q14566 821 aa11.18□□□□□ -0.62
SKP1-213ENST00000524288 C6orf118Q5T5N4 469 aa11.18□□□□□ -0.62
SKP1-213ENST00000524288 TRIM52Q96A61 297 aa11.18□□□□□ -0.62
SKP1-213ENST00000524288 ZBBXA8MT70 800 aa11.17□□□□□ -0.62
SKP1-213ENST00000524288 C1orf115Q9H7X2 142 aa11.17□□□□□ -0.62
SKP1-213ENST00000524288 MAN1A2O60476 641 aa11.16□□□□□ -0.62
SKP1-213ENST00000524288 UBTFP17480 764 aaKnown RBP11.16□□□□□ -0.62
SKP1-213ENST00000524288 SEPT12Q8IYM1 358 aa11.16□□□□□ -0.62
SKP1-213ENST00000524288 ZNF592Q92610 1267 aa11.16□□□□□ -0.62
SKP1-213ENST00000524288 SOS2Q07890 1332 aaPredicted RBP11.15□□□□□ -0.62
SKP1-213ENST00000524288 ESPNB1AK53 854 aa11.15□□□□□ -0.62
SKP1-213ENST00000524288 H3BM21 787 aa11.14□□□□□ -0.63
SKP1-213ENST00000524288 CCDC125Q86Z20 511 aa11.14□□□□□ -0.63
SKP1-213ENST00000524288 IRF7Q92985 503 aa11.14□□□□□ -0.63
SKP1-213ENST00000524288 MCCD1P59942 119 aaPredicted RBP11.13□□□□□ -0.63
SKP1-213ENST00000524288 NDUFB9Q9Y6M9 179 aa11.13□□□□□ -0.63
SKP1-213ENST00000524288 MTMR14Q8NCE2 650 aa11.12□□□□□ -0.63
SKP1-213ENST00000524288 SPINT1O43278 529 aa11.11□□□□□ -0.63
SKP1-213ENST00000524288 FBXO45P0C2W1 286 aa11.11□□□□□ -0.63
SKP1-213ENST00000524288 INSM1Q01101 510 aaPredicted RBP11.11□□□□□ -0.63
SKP1-213ENST00000524288 CBLBQ13191 982 aa11.11□□□□□ -0.63
SKP1-213ENST00000524288 LCE2CQ5TA81 110 aa11.11□□□□□ -0.63
SKP1-213ENST00000524288 POM121Q96HA1 1249 aa11.11□□□□□ -0.63
SKP1-213ENST00000524288 ZNF330Q9Y3S2 320 aaPredicted RBP11.11□□□□□ -0.63
SKP1-213ENST00000524288 TTLL8A6PVC2 850 aa11.1□□□□□ -0.63
SKP1-213ENST00000524288 NR1H3Q13133 447 aa11.1□□□□□ -0.63
SKP1-213ENST00000524288 SOBPA7XYQ1 873 aa11.09□□□□□ -0.63
SKP1-213ENST00000524288 ERVH48-1M5A8F1 160 aa11.09□□□□□ -0.63
SKP1-213ENST00000524288 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.09□□□□□ -0.63
SKP1-213ENST00000524288 DNMT3LQ9UJW3 386 aa11.09□□□□□ -0.63
SKP1-213ENST00000524288 PCDHB9Q9Y5E1 797 aa11.09□□□□□ -0.63
SKP1-213ENST00000524288 ZNF784Q8NCA9 323 aaPredicted RBP11.08□□□□□ -0.64
SKP1-213ENST00000524288 SNRKQ9NRH2 765 aa11.08□□□□□ -0.64
SKP1-213ENST00000524288 VSIG8P0DPA2 414 aa11.07□□□□□ -0.64
SKP1-213ENST00000524288 A6NJR5 290 aa11.06□□□□□ -0.64
SKP1-213ENST00000524288 TRAK2O60296 914 aa11.06□□□□□ -0.64
SKP1-213ENST00000524288 GPR37L1O60883 481 aa11.06□□□□□ -0.64
SKP1-213ENST00000524288 ADH1AP07327 375 aa11.06□□□□□ -0.64
SKP1-213ENST00000524288 RAB15P59190 212 aa11.06□□□□□ -0.64
SKP1-213ENST00000524288 RNF20Q5VTR2 975 aa11.06□□□□□ -0.64
SKP1-213ENST00000524288 PRM3Q9NNZ6 103 aa11.06□□□□□ -0.64
SKP1-213ENST00000524288 TMPRSS4Q9NRS4 437 aa11.06□□□□□ -0.64
SKP1-213ENST00000524288 LILRA1O75019 489 aa11.05□□□□□ -0.64
SKP1-213ENST00000524288 VEGFBP49765 207 aa11.05□□□□□ -0.64
SKP1-213ENST00000524288 STK17AQ9UEE5 414 aa11.04□□□□□ -0.64
SKP1-213ENST00000524288 RELBQ01201 579 aa11.03□□□□□ -0.64
SKP1-213ENST00000524288 PROSER2Q86WR7 435 aaPredicted RBP11.03□□□□□ -0.64
SKP1-213ENST00000524288 AGBL1Q96MI9 1066 aa11.03□□□□□ -0.64
SKP1-213ENST00000524288 RAD21O60216 631 aa11.02□□□□□ -0.65
SKP1-213ENST00000524288 GIGYF1O75420 1035 aaPredicted RBP11.02□□□□□ -0.65
SKP1-213ENST00000524288 GMPRP36959 345 aa11.02□□□□□ -0.65
SKP1-213ENST00000524288 ZNF777Q9ULD5 760 aaPredicted RBP11.02□□□□□ -0.65
SKP1-213ENST00000524288 ERBB4Q15303 1308 aa11.02□□□□□ -0.65
SKP1-213ENST00000524288 PPFIA3O75145 1194 aa11.01□□□□□ -0.65
SKP1-213ENST00000524288 PTGIRP43119 386 aa11.01□□□□□ -0.65
SKP1-213ENST00000524288 ADD1P35611 737 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms