RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-223	ENST00000524033	XPC	Q01831	940 aa	Predicted RBP	10.49	□□□□□ -0.73
SPIDR-223	ENST00000524033	NBR1	Q14596	966 aa		10.49	□□□□□ -0.73
SPIDR-223	ENST00000524033	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.49	□□□□□ -0.73
SPIDR-223	ENST00000524033	KIF1B	O60333	1816 aa		10.49	□□□□□ -0.73
SPIDR-223	ENST00000524033	FBXO22	Q8NEZ5	403 aa		10.48	□□□□□ -0.73
SPIDR-223	ENST00000524033	DCAF11	Q8TEB1	546 aa		10.48	□□□□□ -0.73
SPIDR-223	ENST00000524033	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.48	□□□□□ -0.73
SPIDR-223	ENST00000524033	PRAM1	Q96QH2	718 aa		10.48	□□□□□ -0.73
SPIDR-223	ENST00000524033	POGK	Q9P215	609 aa		10.48	□□□□□ -0.73
SPIDR-223	ENST00000524033	USP21	Q9UK80	565 aa		10.48	□□□□□ -0.73
SPIDR-223	ENST00000524033	PLEKHH1	Q9ULM0	1364 aa		10.48	□□□□□ -0.73
SPIDR-223	ENST00000524033	PIK3C2G	O75747	1445 aa		10.48	□□□□□ -0.73
SPIDR-223	ENST00000524033	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.48	□□□□□ -0.73
SPIDR-223	ENST00000524033	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.47	□□□□□ -0.73	2e-6	■■■■□ 22
SPIDR-223	ENST00000524033	POTEH	Q6S545	545 aa		10.47	□□□□□ -0.73
SPIDR-223	ENST00000524033	FNBP4	Q8N3X1	1017 aa	Predicted RBP	10.47	□□□□□ -0.73
SPIDR-223	ENST00000524033	PNISR	Q8TF01	805 aa	Known RBP	10.47	□□□□□ -0.73
SPIDR-223	ENST00000524033	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.47	□□□□□ -0.73	5e-8	■■■■□ 23
SPIDR-223	ENST00000524033	TRIM35	Q9UPQ4	493 aa		10.47	□□□□□ -0.73
SPIDR-223	ENST00000524033	GPRASP1	Q5JY77	1395 aa		10.47	□□□□□ -0.73
SPIDR-223	ENST00000524033	TECPR2	O15040	1411 aa		10.47	□□□□□ -0.73
SPIDR-223	ENST00000524033	PPP1R37	O75864	691 aa		10.46	□□□□□ -0.73
SPIDR-223	ENST00000524033	KRT28	Q7Z3Y7	464 aa		10.46	□□□□□ -0.73
SPIDR-223	ENST00000524033	SHPRH	Q149N8	1683 aa		10.46	□□□□□ -0.74
SPIDR-223	ENST00000524033	PARD3	Q8TEW0	1356 aa		10.45	□□□□□ -0.74
SPIDR-223	ENST00000524033	PSME1	Q06323	249 aa		10.45	□□□□□ -0.74
SPIDR-223	ENST00000524033	STAC3	Q96MF2	364 aa		10.45	□□□□□ -0.74
SPIDR-223	ENST00000524033	TRPC5	Q9UL62	973 aa	Predicted RBP	10.45	□□□□□ -0.74
SPIDR-223	ENST00000524033	NALCN	Q8IZF0	1738 aa		10.44	□□□□□ -0.74
SPIDR-223	ENST00000524033	ERICH6	Q7L0X2	663 aa		10.44	□□□□□ -0.74
SPIDR-223	ENST00000524033	TRAK1	Q9UPV9	953 aa		10.44	□□□□□ -0.74
SPIDR-223	ENST00000524033	BLM	P54132	1417 aa	Predicted RBP	10.43	□□□□□ -0.74
SPIDR-223	ENST00000524033	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.43	□□□□□ -0.74
SPIDR-223	ENST00000524033	PPL	O60437	1756 aa		10.43	□□□□□ -0.74
SPIDR-223	ENST00000524033	NHSL1	Q5SYE7	1610 aa		10.43	□□□□□ -0.74
SPIDR-223	ENST00000524033	SETD1A	O15047	1707 aa	Known RBP	10.42	□□□□□ -0.74
SPIDR-223	ENST00000524033	SPATA31A3	Q5VYP0	1347 aa		10.42	□□□□□ -0.74
SPIDR-223	ENST00000524033	LMOD2	Q6P5Q4	547 aa		10.42	□□□□□ -0.74
SPIDR-223	ENST00000524033	NOP58	Q9Y2X3	529 aa	Known RBP	10.42	□□□□□ -0.74
SPIDR-223	ENST00000524033	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.42	□□□□□ -0.74
SPIDR-223	ENST00000524033	NRXN1	Q9ULB1	1477 aa		10.42	□□□□□ -0.74
SPIDR-223	ENST00000524033	CDC42BPG	Q6DT37	1551 aa		10.41	□□□□□ -0.74
SPIDR-223	ENST00000524033	RALBP1	Q15311	655 aa		10.41	□□□□□ -0.74
SPIDR-223	ENST00000524033	PMFBP1	Q8TBY8	1022 aa		10.41	□□□□□ -0.74
SPIDR-223	ENST00000524033	DCBLD2	Q96PD2	775 aa		10.41	□□□□□ -0.74
SPIDR-223	ENST00000524033	MYOM2	P54296	1465 aa		10.41	□□□□□ -0.74
SPIDR-223	ENST00000524033	PXDN	Q92626	1479 aa		10.41	□□□□□ -0.74
SPIDR-223	ENST00000524033		G3V3G9	751 aa		10.4	□□□□□ -0.74
SPIDR-223	ENST00000524033	MS4A4A	Q96JQ5	239 aa		10.4	□□□□□ -0.74
SPIDR-223	ENST00000524033	GJD4	Q96KN9	370 aa	Predicted RBP	10.4	□□□□□ -0.74
SPIDR-223	ENST00000524033	EP400	Q96L91	3159 aa		10.4	□□□□□ -0.75
SPIDR-223	ENST00000524033	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.39	□□□□□ -0.75
SPIDR-223	ENST00000524033	ATN1	P54259	1190 aa	Predicted RBP	10.39	□□□□□ -0.75
SPIDR-223	ENST00000524033	UNC5CL	Q8IV45	518 aa		10.39	□□□□□ -0.75
SPIDR-223	ENST00000524033	CABLES1	Q8TDN4	633 aa		10.39	□□□□□ -0.75
SPIDR-223	ENST00000524033	BCL9L	Q86UU0	1499 aa		10.38	□□□□□ -0.75
SPIDR-223	ENST00000524033	WASL	O00401	505 aa	Predicted RBP	10.38	□□□□□ -0.75
SPIDR-223	ENST00000524033	GABBR2	O75899	941 aa		10.38	□□□□□ -0.75
SPIDR-223	ENST00000524033	RRP1	P56182	461 aa	Known RBP	10.38	□□□□□ -0.75
SPIDR-223	ENST00000524033	RGS12	O14924	1447 aa		10.38	□□□□□ -0.75
SPIDR-223	ENST00000524033	ATMIN	O43313	823 aa	Predicted RBP	10.37	□□□□□ -0.75
SPIDR-223	ENST00000524033	ATRN	O75882	1429 aa		10.37	□□□□□ -0.75
SPIDR-223	ENST00000524033	CARD11	Q9BXL7	1154 aa		10.37	□□□□□ -0.75
SPIDR-223	ENST00000524033	SBNO1	A3KN83	1393 aa		10.37	□□□□□ -0.75
SPIDR-223	ENST00000524033	FAM83G	A6ND36	823 aa		10.36	□□□□□ -0.75
SPIDR-223	ENST00000524033	PDE3B	Q13370	1112 aa		10.36	□□□□□ -0.75
SPIDR-223	ENST00000524033	NGDN	Q8NEJ9	315 aa	Known RBP	10.36	□□□□□ -0.75
SPIDR-223	ENST00000524033	CCDC136	Q96JN2	1154 aa		10.36	□□□□□ -0.75
SPIDR-223	ENST00000524033	IPO9	Q96P70	1041 aa	Known RBP	10.36	□□□□□ -0.75
SPIDR-223	ENST00000524033	MYOM1	P52179	1685 aa		10.36	□□□□□ -0.75
SPIDR-223	ENST00000524033	ATAD2	Q6PL18	1390 aa		10.36	□□□□□ -0.75
SPIDR-223	ENST00000524033	ST20-MTHFS	A0A0A6YYL1	179 aa		10.35	□□□□□ -0.75
SPIDR-223	ENST00000524033	TMC1	Q8TDI8	760 aa		10.35	□□□□□ -0.75
SPIDR-223	ENST00000524033	ARHGEF10	O15013	1369 aa		10.35	□□□□□ -0.75
SPIDR-223	ENST00000524033	TNS3	Q68CZ2	1445 aa		10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	ANKAR	Q7Z5J8	1434 aa		10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	IFT172	Q9UG01	1749 aa		10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	KIAA1210	Q9ULL0	1709 aa		10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	PLCG2	P16885	1265 aa		10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	PDE4A	P27815	886 aa		10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	DEK	P35659	375 aa	Known RBP	10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	NLRP13	Q86W25	1043 aa		10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	CCDC125	Q86Z20	511 aa		10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	NUDT16	Q96DE0	195 aa	Known RBP	10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	CDK19	Q9BWU1	502 aa		10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	CCDC9	Q9Y3X0	531 aa	Known RBP	10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	VIRMA	Q69YN4	1812 aa	Known RBP	10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	EIF3A	Q14152	1382 aa	Known RBP	10.34	□□□□□ -0.75
SPIDR-223	ENST00000524033	PRR36	Q9H6K5	1346 aa		10.33	□□□□□ -0.76
SPIDR-223	ENST00000524033	DLC1	Q96QB1	1528 aa		10.33	□□□□□ -0.76
SPIDR-223	ENST00000524033	TCERG1	O14776	1098 aa	Known RBP	10.33	□□□□□ -0.76
SPIDR-223	ENST00000524033	PER1	O15534	1290 aa	Predicted RBP	10.33	□□□□□ -0.76
SPIDR-223	ENST00000524033	SEC24B	O95487	1268 aa		10.33	□□□□□ -0.76
SPIDR-223	ENST00000524033	VPS72	Q15906	364 aa		10.33	□□□□□ -0.76
SPIDR-223	ENST00000524033	ASTL	Q6HA08	431 aa	Predicted RBP	10.33	□□□□□ -0.76
SPIDR-223	ENST00000524033	ADGRB1	O14514	1584 aa		10.33	□□□□□ -0.76
SPIDR-223	ENST00000524033	COL22A1	Q8NFW1	1626 aa	Predicted RBP	10.33	□□□□□ -0.76
SPIDR-223	ENST00000524033	ANP32A	P39687	249 aa	Known RBP	10.32	□□□□□ -0.76
SPIDR-223	ENST00000524033	NBPF1	Q3BBV0	1214 aa		10.32	□□□□□ -0.76
SPIDR-223	ENST00000524033	IER5L	Q5T953	404 aa		10.32	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms