RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 RGS17Q9UGC6 210 aaPredicted RBP20.83■□□□□ 0.93
LSM1-203ENST00000520755 CAMTA1Q9Y6Y1 1673 aa20.83■□□□□ 0.92
LSM1-203ENST00000520755 SMG6Q86US8 1419 aaKnown RBP20.82■□□□□ 0.92
LSM1-203ENST00000520755 RRS1Q15050 365 aaKnown RBP20.82■□□□□ 0.92
LSM1-203ENST00000520755 ZNF772Q68DY9 489 aaPredicted RBP20.82■□□□□ 0.92
LSM1-203ENST00000520755 AATKQ6ZMQ8 1374 aa20.82■□□□□ 0.92
LSM1-203ENST00000520755 MAP3K19Q56UN5 1328 aa20.8■□□□□ 0.92
LSM1-203ENST00000520755 ABCC6O95255 1503 aa20.8■□□□□ 0.92
LSM1-203ENST00000520755 UNC5CLQ8IV45 518 aa20.8■□□□□ 0.92
LSM1-203ENST00000520755 STRN4Q9NRL3 753 aa20.79■□□□□ 0.92
LSM1-203ENST00000520755 ANP32CO43423 234 aa20.78■□□□□ 0.92
LSM1-203ENST00000520755 AMPHP49418 695 aa20.78■□□□□ 0.92
LSM1-203ENST00000520755 RALBP1Q15311 655 aa20.78■□□□□ 0.92
LSM1-203ENST00000520755 AXIN2Q9Y2T1 843 aa20.78■□□□□ 0.92
LSM1-203ENST00000520755 COL5A2P05997 1499 aaPredicted RBP20.77■□□□□ 0.92
LSM1-203ENST00000520755 EVA1CP58658 441 aa20.77■□□□□ 0.92
LSM1-203ENST00000520755 QTRT2Q9H974 415 aaKnown RBP20.77■□□□□ 0.92
LSM1-203ENST00000520755 PPM1GO15355 546 aaPredicted RBP20.76■□□□□ 0.91
LSM1-203ENST00000520755 POTEAQ6S8J7 498 aa20.76■□□□□ 0.91
LSM1-203ENST00000520755 TRPC5Q9UL62 973 aaPredicted RBP20.76■□□□□ 0.91
LSM1-203ENST00000520755 CCDC9Q9Y3X0 531 aaKnown RBP20.76■□□□□ 0.91
LSM1-203ENST00000520755 EMILIN1Q9Y6C2 1016 aa20.76■□□□□ 0.91
LSM1-203ENST00000520755 ATRNO75882 1429 aa20.76■□□□□ 0.91
LSM1-203ENST00000520755 MYBBP1AQ9BQG0 1328 aaKnown RBP20.76■□□□□ 0.91
LSM1-203ENST00000520755 COL3A1P02461 1466 aaPredicted RBP20.75■□□□□ 0.91
LSM1-203ENST00000520755 CDK12Q9NYV4 1490 aaPredicted RBP20.75■□□□□ 0.91
LSM1-203ENST00000520755 PPP2R1AP30153 589 aa20.75■□□□□ 0.91
LSM1-203ENST00000520755 IP6K1Q92551 441 aa20.75■□□□□ 0.91
LSM1-203ENST00000520755 RTL1A6NKG5 1358 aa20.74■□□□□ 0.91
LSM1-203ENST00000520755 HOXC9P31274 260 aa20.74■□□□□ 0.91
LSM1-203ENST00000520755 MIER1Q8N108 512 aa20.74■□□□□ 0.91
LSM1-203ENST00000520755 RGPD2P0DJD1 1756 aa20.74■□□□□ 0.91
LSM1-203ENST00000520755 FLT4P35916 1363 aa20.73■□□□□ 0.91
LSM1-203ENST00000520755 BLMP54132 1417 aaPredicted RBP20.73■□□□□ 0.91
LSM1-203ENST00000520755 VPS72Q15906 364 aa20.73■□□□□ 0.91
LSM1-203ENST00000520755 POLKQ9UBT6 870 aa20.73■□□□□ 0.91
LSM1-203ENST00000520755 CSB-PGBD3P0DP91 1061 aa20.72■□□□□ 0.91
LSM1-203ENST00000520755 LARP1Q6PKG0 1096 aaKnown RBP20.72■□□□□ 0.91
LSM1-203ENST00000520755 LTV1Q96GA3 475 aaPredicted RBP20.72■□□□□ 0.91
LSM1-203ENST00000520755 GLI3P10071 1580 aa20.72■□□□□ 0.91
LSM1-203ENST00000520755 KIF24Q5T7B8 1368 aa20.72■□□□□ 0.91
LSM1-203ENST00000520755 FAM208AQ9UK61 1670 aaKnown RBP20.71■□□□□ 0.91
LSM1-203ENST00000520755 RGPD1P0DJD0 1748 aa20.71■□□□□ 0.91
LSM1-203ENST00000520755 HSP90AB2PQ58FF8 381 aa20.7■□□□□ 0.9
LSM1-203ENST00000520755 ANKRD24Q8TF21 1146 aa20.7■□□□□ 0.9
LSM1-203ENST00000520755 GJD4Q96KN9 370 aaPredicted RBP20.7■□□□□ 0.9
LSM1-203ENST00000520755 WDR17Q8IZU2 1322 aa20.7■□□□□ 0.9
LSM1-203ENST00000520755 RBM6P78332 1123 aaKnown RBP20.69■□□□□ 0.9
LSM1-203ENST00000520755 CCDC184Q52MB2 194 aa20.69■□□□□ 0.9
LSM1-203ENST00000520755 TOM1L2Q6ZVM7 507 aa20.69■□□□□ 0.9
LSM1-203ENST00000520755 USP35Q9P2H5 1018 aa20.69■□□□□ 0.9
LSM1-203ENST00000520755 ERBB3P21860 1342 aa20.69■□□□□ 0.9
LSM1-203ENST00000520755 CRB1P82279 1406 aa20.69■□□□□ 0.9
LSM1-203ENST00000520755 RXRBP28702 533 aa20.68■□□□□ 0.9
LSM1-203ENST00000520755 SPATA31A5Q5VU36 1347 aa20.68■□□□□ 0.9
LSM1-203ENST00000520755 SPATA31A7Q8IWB4 1347 aa20.68■□□□□ 0.9
LSM1-203ENST00000520755 INSRP06213 1382 aa20.68■□□□□ 0.9
LSM1-203ENST00000520755 MTHFSP49914 203 aa20.66■□□□□ 0.9
LSM1-203ENST00000520755 SPATA31A1Q5TZJ5 1347 aa20.66■□□□□ 0.9
LSM1-203ENST00000520755 WNK3Q9BYP7 1800 aa20.66■□□□□ 0.9
LSM1-203ENST00000520755 NLRP2Q9NX02 1062 aa20.65■□□□□ 0.9
LSM1-203ENST00000520755 FAM98CQ17RN3 349 aaKnown RBP20.62■□□□□ 0.89
LSM1-203ENST00000520755 TCP11L2Q8N4U5 519 aa20.62■□□□□ 0.89
LSM1-203ENST00000520755 CARD10Q9BWT7 1032 aa20.62■□□□□ 0.89
LSM1-203ENST00000520755 A0A0G2JS52 829 aa20.61■□□□□ 0.89
LSM1-203ENST00000520755 MYT1Q01538 1121 aa20.61■□□□□ 0.89
LSM1-203ENST00000520755 RGS12O14924 1447 aa20.61■□□□□ 0.89
LSM1-203ENST00000520755 BRWD3Q6RI45 1802 aa20.6■□□□□ 0.89
LSM1-203ENST00000520755 CCER2I3L3R5 266 aa20.6■□□□□ 0.89
LSM1-203ENST00000520755 EIF4A2Q14240 407 aaKnown RBP20.6■□□□□ 0.89
LSM1-203ENST00000520755 THSD7AQ9UPZ6 1657 aa20.6■□□□□ 0.89
LSM1-203ENST00000520755 THRAP3Q9Y2W1 955 aaKnown RBP20.59■□□□□ 0.89
LSM1-203ENST00000520755 NBPF6Q5VWK0 638 aa20.58■□□□□ 0.89
LSM1-203ENST00000520755 USHBP1Q8N6Y0 703 aa20.58■□□□□ 0.89
LSM1-203ENST00000520755 NBPF4Q96M43 638 aa20.58■□□□□ 0.89
LSM1-203ENST00000520755 BARGINQ6ZT62 677 aa20.57■□□□□ 0.88
LSM1-203ENST00000520755 MRS2Q9HD23 443 aa20.57■□□□□ 0.88
LSM1-203ENST00000520755 PARP4Q9UKK3 1724 aaKnown RBP20.57■□□□□ 0.88
LSM1-203ENST00000520755 SEPT12Q8IYM1 358 aa20.56■□□□□ 0.88
LSM1-203ENST00000520755 CFAP53Q96M91 514 aa20.56■□□□□ 0.88
LSM1-203ENST00000520755 ONECUT3O60422 494 aaPredicted RBP20.55■□□□□ 0.88
LSM1-203ENST00000520755 ILDR2Q71H61 639 aa20.55■□□□□ 0.88
LSM1-203ENST00000520755 LRRC37A3O60309 1634 aa20.55■□□□□ 0.88
LSM1-203ENST00000520755 DIAPH1O60610 1272 aaKnown RBP20.54■□□□□ 0.88
LSM1-203ENST00000520755 EYA1Q99502 592 aa20.54■□□□□ 0.88
LSM1-203ENST00000520755 NCAPD2Q15021 1401 aa20.53■□□□□ 0.88
LSM1-203ENST00000520755 IL13P35225 146 aa20.53■□□□□ 0.88
LSM1-203ENST00000520755 DISP2A7MBM2 1401 aa20.53■□□□□ 0.88
LSM1-203ENST00000520755 IL2RBP14784 551 aa20.51■□□□□ 0.87
LSM1-203ENST00000520755 CDCA7Q9BWT1 371 aaPredicted RBP20.51■□□□□ 0.87
LSM1-203ENST00000520755 IGSF1Q8N6C5 1336 aa20.51■□□□□ 0.87
LSM1-203ENST00000520755 MEGF6O75095 1541 aa20.5■□□□□ 0.87
LSM1-203ENST00000520755 PNISRQ8TF01 805 aaKnown RBP20.5■□□□□ 0.87
LSM1-203ENST00000520755 SHANK3Q9BYB0 1731 aa20.48■□□□□ 0.87
LSM1-203ENST00000520755 U2SURPO15042 1029 aaKnown RBP20.48■□□□□ 0.87
LSM1-203ENST00000520755 DDB1Q16531 1140 aa20.48■□□□□ 0.87
LSM1-203ENST00000520755 RAPGEF4Q8WZA2 1011 aa20.48■□□□□ 0.87
LSM1-203ENST00000520755 DLG5Q8TDM6 1919 aa20.48■□□□□ 0.87
LSM1-203ENST00000520755 PKD1L3Q7Z443 1732 aa20.47■□□□□ 0.87
LSM1-203ENST00000520755 AEBP1Q8IUX7 1158 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms