RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 PHTF2Q8N3S3 785 aa12.73□□□□□ -0.37
SDCBP-208ENST00000520228 SLC10A4Q96EP9 437 aa12.73□□□□□ -0.37
SDCBP-208ENST00000520228 SERPINA10Q9UK55 444 aa12.73□□□□□ -0.37
SDCBP-208ENST00000520228 GDF9O60383 454 aa12.72□□□□□ -0.37
SDCBP-208ENST00000520228 CDV3Q9UKY7 258 aaKnown RBP12.72□□□□□ -0.37
SDCBP-208ENST00000520228 ESPNB1AK53 854 aa12.71□□□□□ -0.37
SDCBP-208ENST00000520228 GIGYF1O75420 1035 aaPredicted RBP12.69□□□□□ -0.38
SDCBP-208ENST00000520228 TRIM67Q6ZTA4 783 aa12.69□□□□□ -0.38
SDCBP-208ENST00000520228 CCDC97Q96F63 343 aaPredicted RBP12.69□□□□□ -0.38
SDCBP-208ENST00000520228 CHIC2Q9UKJ5 165 aa12.69□□□□□ -0.38
SDCBP-208ENST00000520228 TLL2Q9Y6L7 1015 aa12.69□□□□□ -0.38
SDCBP-208ENST00000520228 PIK3CDO00329 1044 aa12.68□□□□□ -0.38
SDCBP-208ENST00000520228 GRM5P41594 1212 aa12.68□□□□□ -0.38
SDCBP-208ENST00000520228 FOXC1Q12948 553 aa12.68□□□□□ -0.38
SDCBP-208ENST00000520228 NBPF20Q3BBV1 942 aa12.68□□□□□ -0.38
SDCBP-208ENST00000520228 NFATC2IPQ8NCF5 419 aa12.68□□□□□ -0.38
SDCBP-208ENST00000520228 PPP1R12CQ9BZL4 782 aa12.68□□□□□ -0.38
SDCBP-208ENST00000520228 KCTD15Q96SI1 283 aaPredicted RBP12.67□□□□□ -0.38
SDCBP-208ENST00000520228 PRR20EP86478 221 aa12.66□□□□□ -0.38
SDCBP-208ENST00000520228 PRR20CP86479 221 aa12.66□□□□□ -0.38
SDCBP-208ENST00000520228 PRR20DP86480 221 aa12.66□□□□□ -0.38
SDCBP-208ENST00000520228 PRR20BP86481 221 aa12.66□□□□□ -0.38
SDCBP-208ENST00000520228 PRR20AP86496 221 aa12.66□□□□□ -0.38
SDCBP-208ENST00000520228 TBC1D9Q6ZT07 1266 aa12.66□□□□□ -0.38
SDCBP-208ENST00000520228 VASH1Q7L8A9 365 aaPredicted RBP12.66□□□□□ -0.38
SDCBP-208ENST00000520228 PALM3A6NDB9 673 aaPredicted RBP12.65□□□□□ -0.38
SDCBP-208ENST00000520228 SLFNL1Q499Z3 407 aa12.65□□□□□ -0.38
SDCBP-208ENST00000520228 CFAP70Q5T0N1 1121 aa12.65□□□□□ -0.38
SDCBP-208ENST00000520228 SEPT12Q8IYM1 358 aa12.65□□□□□ -0.38
SDCBP-208ENST00000520228 EIF4G1Q04637 1599 aaKnown RBP12.64□□□□□ -0.39
SDCBP-208ENST00000520228 ADH1CP00326 375 aa12.64□□□□□ -0.39
SDCBP-208ENST00000520228 TOR4AQ9NXH8 423 aa12.64□□□□□ -0.39
SDCBP-208ENST00000520228 TFIP11Q9UBB9 837 aaKnown RBP12.64□□□□□ -0.39
SDCBP-208ENST00000520228 ATP9BO43861 1147 aa12.63□□□□□ -0.39
SDCBP-208ENST00000520228 ARID5BQ14865 1188 aa12.63□□□□□ -0.39
SDCBP-208ENST00000520228 TSGA10IPQ3SY00 556 aa12.63□□□□□ -0.39
SDCBP-208ENST00000520228 INTS6LQ5JSJ4 861 aaKnown RBP12.63□□□□□ -0.39
SDCBP-208ENST00000520228 RNF135Q8IUD6 432 aa12.63□□□□□ -0.39
SDCBP-208ENST00000520228 SNIP1Q8TAD8 396 aaKnown RBP12.63□□□□□ -0.39
SDCBP-208ENST00000520228 CCDC85AQ96PX6 553 aaPredicted RBP12.63□□□□□ -0.39
SDCBP-208ENST00000520228 RNF20Q5VTR2 975 aa12.62□□□□□ -0.39
SDCBP-208ENST00000520228 CCDC125Q86Z20 511 aa12.62□□□□□ -0.39
SDCBP-208ENST00000520228 TNFRSF10AO00220 468 aa12.61□□□□□ -0.39
SDCBP-208ENST00000520228 TRAF7Q6Q0C0 670 aa12.61□□□□□ -0.39
SDCBP-208ENST00000520228 ARID3AQ99856 593 aa12.61□□□□□ -0.39
SDCBP-208ENST00000520228 MAFBQ9Y5Q3 323 aaPredicted RBP12.61□□□□□ -0.39
SDCBP-208ENST00000520228 SKIP12755 728 aa12.6□□□□□ -0.39
SDCBP-208ENST00000520228 FSHRP23945 695 aa12.6□□□□□ -0.39
SDCBP-208ENST00000520228 NR5A1Q13285 461 aa12.6□□□□□ -0.39
SDCBP-208ENST00000520228 ALDH1A1P00352 501 aa12.59□□□□□ -0.39
SDCBP-208ENST00000520228 MAP7D1Q3KQU3 841 aa12.59□□□□□ -0.39
SDCBP-208ENST00000520228 PLEKHM2Q8IWE5 1019 aa12.59□□□□□ -0.39
SDCBP-208ENST00000520228 PLPP7Q8NBV4 271 aa12.59□□□□□ -0.39
SDCBP-208ENST00000520228 J3QL48 77 aa12.58□□□□□ -0.4
SDCBP-208ENST00000520228 NR3C2P08235 984 aa12.58□□□□□ -0.4
SDCBP-208ENST00000520228 SRPK2P78362 688 aaKnown RBP12.58□□□□□ -0.4
SDCBP-208ENST00000520228 CC2D2AQ9P2K1 1620 aa12.58□□□□□ -0.4
SDCBP-208ENST00000520228 USP17L5A8MUK1 530 aa12.57□□□□□ -0.4
SDCBP-208ENST00000520228 CYP4X1Q8N118 509 aa12.57□□□□□ -0.4
SDCBP-208ENST00000520228 CECR2Q9BXF3 1484 aa12.57□□□□□ -0.4
SDCBP-208ENST00000520228 ERVH48-1M5A8F1 160 aa12.56□□□□□ -0.4
SDCBP-208ENST00000520228 SMPD1P17405 629 aa12.56□□□□□ -0.4
SDCBP-208ENST00000520228 LMOD1P29536 600 aaPredicted RBP12.56□□□□□ -0.4
SDCBP-208ENST00000520228 CDCA7Q9BWT1 371 aaPredicted RBP12.56□□□□□ -0.4
SDCBP-208ENST00000520228 USP17L3A6NCW0 530 aa12.55□□□□□ -0.4
SDCBP-208ENST00000520228 USP17L4A6NCW7 530 aa12.55□□□□□ -0.4
SDCBP-208ENST00000520228 LZTS3O60299 673 aaPredicted RBP12.55□□□□□ -0.4
SDCBP-208ENST00000520228 USP17L2Q6R6M4 530 aa12.55□□□□□ -0.4
SDCBP-208ENST00000520228 USP17L1Q7RTZ2 530 aa12.55□□□□□ -0.4
SDCBP-208ENST00000520228 CCDC116Q8IYX3 515 aa12.55□□□□□ -0.4
SDCBP-208ENST00000520228 TTC24A2A3L6 582 aaPredicted RBP12.54□□□□□ -0.4
SDCBP-208ENST00000520228 DHX9Q08211 1270 aaKnown RBP12.54□□□□□ -0.4
SDCBP-208ENST00000520228 DOLKQ9UPQ8 538 aa12.54□□□□□ -0.4
SDCBP-208ENST00000520228 RAB15P59190 212 aa12.53□□□□□ -0.4
SDCBP-208ENST00000520228 NNTQ13423 1086 aa12.53□□□□□ -0.4
SDCBP-208ENST00000520228 PCDHB11Q9Y5F2 797 aa12.53□□□□□ -0.4
SDCBP-208ENST00000520228 WASF2Q9Y6W5 498 aa12.53□□□□□ -0.4
SDCBP-208ENST00000520228 RFX1P22670 979 aa12.52□□□□□ -0.41
SDCBP-208ENST00000520228 NCOA4Q13772 614 aa12.52□□□□□ -0.41
SDCBP-208ENST00000520228 KANK4Q5T7N3 995 aaPredicted RBP12.52□□□□□ -0.41
SDCBP-208ENST00000520228 PPP1R26Q5T8A7 1209 aaPredicted RBP12.52□□□□□ -0.41
SDCBP-208ENST00000520228 DEPDC4Q8N2C3 294 aa12.52□□□□□ -0.41
SDCBP-208ENST00000520228 KLF16Q9BXK1 252 aaPredicted RBP12.52□□□□□ -0.41
SDCBP-208ENST00000520228 PDZRN3Q9UPQ7 1066 aa12.52□□□□□ -0.41
SDCBP-208ENST00000520228 TMPRSS4Q9NRS4 437 aa12.51□□□□□ -0.41
SDCBP-208ENST00000520228 ERVK-9P63128 1117 aa12.5□□□□□ -0.41
SDCBP-208ENST00000520228 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.49□□□□□ -0.41
SDCBP-208ENST00000520228 PBXIP1Q96AQ6 731 aa12.49□□□□□ -0.41
SDCBP-208ENST00000520228 EMILIN1Q9Y6C2 1016 aa12.49□□□□□ -0.41
SDCBP-208ENST00000520228 LILRA1O75019 489 aa12.48□□□□□ -0.41
SDCBP-208ENST00000520228 PPP1R15AO75807 674 aaPredicted RBP12.48□□□□□ -0.41
SDCBP-208ENST00000520228 SCTRP47872 440 aa12.48□□□□□ -0.41
SDCBP-208ENST00000520228 EML3Q32P44 896 aa12.48□□□□□ -0.41
SDCBP-208ENST00000520228 OXLD1Q5BKU9 147 aa12.48□□□□□ -0.41
SDCBP-208ENST00000520228 ZNF784Q8NCA9 323 aaPredicted RBP12.48□□□□□ -0.41
SDCBP-208ENST00000520228 VRTNQ9H8Y1 702 aa12.47□□□□□ -0.41
SDCBP-208ENST00000520228 MKRN1Q9UHC7 482 aaKnown RBP12.47□□□□□ -0.41
SDCBP-208ENST00000520228 USP4Q13107 963 aa12.46□□□□□ -0.41
SDCBP-208ENST00000520228 HPS1Q92902 700 aa12.46□□□□□ -0.41
SDCBP-208ENST00000520228 CC2D2BQ6DHV5 1058 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms