RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 TRAIPQ9BWF2 469 aa9.68□□□□□ -0.86
CPNE3-202ENST00000517391 ZBTB7CA1YPR0 619 aa9.67□□□□□ -0.86
CPNE3-202ENST00000517391 MMP16P51512 607 aa9.67□□□□□ -0.86
CPNE3-202ENST00000517391 PDE4CQ08493 712 aa9.67□□□□□ -0.86
CPNE3-202ENST00000517391 LYPD8Q6UX82 237 aa9.67□□□□□ -0.86
CPNE3-202ENST00000517391 GPR37L1O60883 481 aa9.66□□□□□ -0.86
CPNE3-202ENST00000517391 DXOO77932 396 aaKnown RBP9.66□□□□□ -0.86
CPNE3-202ENST00000517391 NR6A1Q15406 480 aa9.66□□□□□ -0.86
CPNE3-202ENST00000517391 JUNDP17535 347 aa9.65□□□□□ -0.86
CPNE3-202ENST00000517391 VAC14Q08AM6 782 aa9.65□□□□□ -0.86
CPNE3-202ENST00000517391 TMEM151AQ8N4L1 468 aa9.65□□□□□ -0.86
CPNE3-202ENST00000517391 EPS8L1Q8TE68 723 aa9.65□□□□□ -0.86
CPNE3-202ENST00000517391 PER1O15534 1290 aaPredicted RBP9.64□□□□□ -0.87
CPNE3-202ENST00000517391 CCDC24Q8N4L8 307 aa9.64□□□□□ -0.87
CPNE3-202ENST00000517391 ALG2Q9H553 416 aa9.64□□□□□ -0.87
CPNE3-202ENST00000517391 GSK3AP49840 483 aa9.63□□□□□ -0.87
CPNE3-202ENST00000517391 ADAMTS19Q8TE59 1207 aa9.63□□□□□ -0.87
CPNE3-202ENST00000517391 EIF4G2P78344 907 aaKnown RBP eCLIP9.61□□□□□ -0.87
CPNE3-202ENST00000517391 SEMA3FQ13275 785 aa9.61□□□□□ -0.87
CPNE3-202ENST00000517391 RC3H1Q5TC82 1133 aaKnown RBP9.61□□□□□ -0.87
CPNE3-202ENST00000517391 TRIM46Q7Z4K8 759 aa9.61□□□□□ -0.87
CPNE3-202ENST00000517391 PBXIP1Q96AQ6 731 aa9.61□□□□□ -0.87
CPNE3-202ENST00000517391 BMP1P13497 986 aa9.6□□□□□ -0.87
CPNE3-202ENST00000517391 PPP1R12CQ9BZL4 782 aa9.6□□□□□ -0.87
CPNE3-202ENST00000517391 CAPN5O15484 640 aaPredicted RBP9.59□□□□□ -0.87
CPNE3-202ENST00000517391 GDF11O95390 407 aa9.59□□□□□ -0.87
CPNE3-202ENST00000517391 ALDH1A1P00352 501 aa9.59□□□□□ -0.87
CPNE3-202ENST00000517391 RETREG2Q8NC44 543 aa9.59□□□□□ -0.87
CPNE3-202ENST00000517391 NUDT12Q9BQG2 462 aa9.59□□□□□ -0.87
CPNE3-202ENST00000517391 ZC3H4Q9UPT8 1303 aaKnown RBP9.58□□□□□ -0.88
CPNE3-202ENST00000517391 VSIG8P0DPA2 414 aa9.58□□□□□ -0.88
CPNE3-202ENST00000517391 WNT7BP56706 349 aa9.58□□□□□ -0.88
CPNE3-202ENST00000517391 NR1H3Q13133 447 aa9.58□□□□□ -0.88
CPNE3-202ENST00000517391 PALM3A6NDB9 673 aaPredicted RBP9.57□□□□□ -0.88
CPNE3-202ENST00000517391 RASSF7Q02833 373 aa9.57□□□□□ -0.88
CPNE3-202ENST00000517391 PTPRNQ16849 979 aa9.57□□□□□ -0.88
CPNE3-202ENST00000517391 CFAP70Q5T0N1 1121 aa9.57□□□□□ -0.88
CPNE3-202ENST00000517391 RNF225M0QZC1 329 aaPredicted RBP9.56□□□□□ -0.88
CPNE3-202ENST00000517391 RFX1P22670 979 aa9.56□□□□□ -0.88
CPNE3-202ENST00000517391 FKBPLQ9UIM3 349 aa9.56□□□□□ -0.88
CPNE3-202ENST00000517391 ZBBXA8MT70 800 aa9.55□□□□□ -0.88
CPNE3-202ENST00000517391 F12P00748 615 aaPredicted RBP9.55□□□□□ -0.88
CPNE3-202ENST00000517391 CCNYL3P0C7X3 344 aa9.55□□□□□ -0.88
CPNE3-202ENST00000517391 PTCRAQ6ISU1 281 aaPredicted RBP9.55□□□□□ -0.88
CPNE3-202ENST00000517391 LMOD1P29536 600 aaPredicted RBP9.54□□□□□ -0.88
CPNE3-202ENST00000517391 SRPK2P78362 688 aaKnown RBP9.54□□□□□ -0.88
CPNE3-202ENST00000517391 ARMC2Q8NEN0 867 aa9.54□□□□□ -0.88
CPNE3-202ENST00000517391 ZNF592Q92610 1267 aa9.54□□□□□ -0.88
CPNE3-202ENST00000517391 TFIP11Q9UBB9 837 aaKnown RBP9.54□□□□□ -0.88
CPNE3-202ENST00000517391 CSB-PGBD3P0DP91 1061 aa9.53□□□□□ -0.88
CPNE3-202ENST00000517391 CTHP32929 405 aa9.53□□□□□ -0.88
CPNE3-202ENST00000517391 SKOR1P84550 965 aa9.53□□□□□ -0.88
CPNE3-202ENST00000517391 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.52□□□□□ -0.89
CPNE3-202ENST00000517391 GPKOWQ92917 476 aaPredicted RBP eCLIP9.52□□□□□ -0.89
CPNE3-202ENST00000517391 ZFP42Q96MM3 310 aa9.52□□□□□ -0.89
CPNE3-202ENST00000517391 UCN2Q96RP3 112 aa9.52□□□□□ -0.89
CPNE3-202ENST00000517391 EVA1BQ9NVM1 165 aa9.52□□□□□ -0.89
CPNE3-202ENST00000517391 USTQ9Y2C2 406 aa9.52□□□□□ -0.89
CPNE3-202ENST00000517391 GPSM3Q9Y4H4 160 aa9.52□□□□□ -0.89
CPNE3-202ENST00000517391 FBXO45P0C2W1 286 aa9.51□□□□□ -0.89
CPNE3-202ENST00000517391 MCCD1P59942 119 aaPredicted RBP9.51□□□□□ -0.89
CPNE3-202ENST00000517391 KCNH2Q12809 1159 aa9.51□□□□□ -0.89
CPNE3-202ENST00000517391 AEBP1Q8IUX7 1158 aa9.51□□□□□ -0.89
CPNE3-202ENST00000517391 WASF2Q9Y6W5 498 aa9.51□□□□□ -0.89
CPNE3-202ENST00000517391 PATL2C9JE40 543 aaKnown RBP9.5□□□□□ -0.89
CPNE3-202ENST00000517391 MAP10Q9P2G4 905 aa9.5□□□□□ -0.89
CPNE3-202ENST00000517391 ATP9BO43861 1147 aa9.49□□□□□ -0.89
CPNE3-202ENST00000517391 IGHA1P01876 353 aa9.49□□□□□ -0.89
CPNE3-202ENST00000517391 PTK2Q05397 1052 aa9.49□□□□□ -0.89
CPNE3-202ENST00000517391 PDXDC2PQ6P474 469 aa9.49□□□□□ -0.89
CPNE3-202ENST00000517391 NFATC2IPQ8NCF5 419 aa9.49□□□□□ -0.89
CPNE3-202ENST00000517391 UNC93B1Q9H1C4 597 aa9.49□□□□□ -0.89
CPNE3-202ENST00000517391 CCDC9Q9Y3X0 531 aaKnown RBP9.49□□□□□ -0.89
CPNE3-202ENST00000517391 MAFBQ9Y5Q3 323 aaPredicted RBP9.49□□□□□ -0.89
CPNE3-202ENST00000517391 SIAH2O43255 324 aa9.47□□□□□ -0.89
CPNE3-202ENST00000517391 ATG7O95352 703 aa9.47□□□□□ -0.89
CPNE3-202ENST00000517391 XP32Q5T750 250 aa9.47□□□□□ -0.89
CPNE3-202ENST00000517391 NBPF14Q5TI25 921 aa9.47□□□□□ -0.89
CPNE3-202ENST00000517391 TBC1D9Q6ZT07 1266 aa9.47□□□□□ -0.89
CPNE3-202ENST00000517391 LINC01559Q495D7 138 aa9.45□□□□□ -0.9
CPNE3-202ENST00000517391 EHBP1Q8NDI1 1231 aa9.45□□□□□ -0.9
CPNE3-202ENST00000517391 BAP1Q92560 729 aa9.45□□□□□ -0.9
CPNE3-202ENST00000517391 VRTNQ9H8Y1 702 aa9.45□□□□□ -0.9
CPNE3-202ENST00000517391 BRD1O95696 1058 aa9.44□□□□□ -0.9
CPNE3-202ENST00000517391 SH3BP2P78314 561 aa9.44□□□□□ -0.9
CPNE3-202ENST00000517391 SCARF1Q14162 830 aa9.44□□□□□ -0.9
CPNE3-202ENST00000517391 GPAT2Q6NUI2 795 aa9.43□□□□□ -0.9
CPNE3-202ENST00000517391 ADAMTS8Q9UP79 889 aa9.43□□□□□ -0.9
CPNE3-202ENST00000517391 DNMT3AQ9Y6K1 912 aaPredicted RBP9.43□□□□□ -0.9
CPNE3-202ENST00000517391 MRPL14Q6P1L8 145 aaKnown RBP9.42□□□□□ -0.9
CPNE3-202ENST00000517391 LZTS3O60299 673 aaPredicted RBP9.41□□□□□ -0.9
CPNE3-202ENST00000517391 SKIP12755 728 aa9.41□□□□□ -0.9
CPNE3-202ENST00000517391 FOXK2Q01167 660 aa9.41□□□□□ -0.9
CPNE3-202ENST00000517391 KCNA1Q09470 495 aa9.41□□□□□ -0.9
CPNE3-202ENST00000517391 CDCA8Q53HL2 280 aa9.41□□□□□ -0.9
CPNE3-202ENST00000517391 KANK4Q5T7N3 995 aaPredicted RBP9.41□□□□□ -0.9
CPNE3-202ENST00000517391 PLEKHM2Q8IWE5 1019 aa9.41□□□□□ -0.9
CPNE3-202ENST00000517391 ZNF511Q8NB15 262 aa9.41□□□□□ -0.9
CPNE3-202ENST00000517391 CEP126Q9P2H0 1117 aa9.41□□□□□ -0.9
CPNE3-202ENST00000517391 ELOAQ14241 798 aaKnown RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms