RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-223ENST00000515459 WDR17Q8IZU2 1322 aa22.71■■□□□ 1.23
LMNA-223ENST00000515459 CDCA7Q9BWT1 371 aaPredicted RBP22.7■■□□□ 1.22
LMNA-223ENST00000515459 BCL11BQ9C0K0 894 aaPredicted RBP22.7■■□□□ 1.22
LMNA-223ENST00000515459 EVC2Q86UK5 1308 aa22.7■■□□□ 1.22
LMNA-223ENST00000515459 NINLQ9Y2I6 1382 aa22.7■■□□□ 1.22
LMNA-223ENST00000515459 RGPD5Q99666 1765 aa22.69■■□□□ 1.22
LMNA-223ENST00000515459 CPSF1Q10570 1443 aaKnown RBP22.69■■□□□ 1.22
LMNA-223ENST00000515459 DCAF8L1A6NGE4 600 aa22.69■■□□□ 1.22
LMNA-223ENST00000515459 AXIN2Q9Y2T1 843 aa22.69■■□□□ 1.22
LMNA-223ENST00000515459 TRPM1Q7Z4N2 1603 aa22.68■■□□□ 1.22
LMNA-223ENST00000515459 KCNH5Q8NCM2 988 aa22.67■■□□□ 1.22
LMNA-223ENST00000515459 ZNF692Q9BU19 519 aaPredicted RBP22.67■■□□□ 1.22
LMNA-223ENST00000515459 CASZ1Q86V15 1759 aa22.67■■□□□ 1.22
LMNA-223ENST00000515459 BCL9O00512 1426 aa22.66■■□□□ 1.22
LMNA-223ENST00000515459 PTF1AQ7RTS3 328 aa22.66■■□□□ 1.22
LMNA-223ENST00000515459 ARHGEF25Q86VW2 580 aa22.66■■□□□ 1.22
LMNA-223ENST00000515459 MARCH10Q8NA82 808 aaPredicted RBP22.66■■□□□ 1.22
LMNA-223ENST00000515459 TTC21BQ7Z4L5 1316 aa22.65■■□□□ 1.22
LMNA-223ENST00000515459 L3MBTL2Q969R5 705 aa22.65■■□□□ 1.22
LMNA-223ENST00000515459 ANO8Q9HCE9 1232 aaPredicted RBP22.65■■□□□ 1.22
LMNA-223ENST00000515459 CARD10Q9BWT7 1032 aa22.64■■□□□ 1.21
LMNA-223ENST00000515459 TTC21AQ8NDW8 1320 aa22.63■■□□□ 1.21
LMNA-223ENST00000515459 CSB-PGBD3P0DP91 1061 aa22.63■■□□□ 1.21
LMNA-223ENST00000515459 SOX12O15370 315 aa22.62■■□□□ 1.21
LMNA-223ENST00000515459 PROM2Q8N271 834 aa22.62■■□□□ 1.21
LMNA-223ENST00000515459 EXOC5O00471 708 aa22.6■■□□□ 1.21
LMNA-223ENST00000515459 NFAT5O94916 1531 aa22.59■■□□□ 1.21
LMNA-223ENST00000515459 PDGFDQ9GZP0 370 aaPredicted RBP22.59■■□□□ 1.21
LMNA-223ENST00000515459 ROCK2O75116 1388 aaKnown RBP22.59■■□□□ 1.21
LMNA-223ENST00000515459 CCDC7Q96M83 1385 aa22.59■■□□□ 1.21
LMNA-223ENST00000515459 ABCC6O95255 1503 aa22.58■■□□□ 1.21
LMNA-223ENST00000515459 ZBTB7AO95365 584 aa22.57■■□□□ 1.2
LMNA-223ENST00000515459 TXNRD1Q16881 649 aa22.57■■□□□ 1.2
LMNA-223ENST00000515459 STK32BQ9NY57 414 aa22.57■■□□□ 1.2
LMNA-223ENST00000515459 KTN1Q86UP2 1357 aaKnown RBP22.57■■□□□ 1.2
LMNA-223ENST00000515459 MYOM1P52179 1685 aa22.57■■□□□ 1.2
LMNA-223ENST00000515459 MON2Q7Z3U7 1717 aa22.56■■□□□ 1.2
LMNA-223ENST00000515459 TNS2Q63HR2 1409 aa22.55■■□□□ 1.2
LMNA-223ENST00000515459 PTGER2P43116 358 aa22.54■■□□□ 1.2
LMNA-223ENST00000515459 SLC15A2Q16348 729 aa22.54■■□□□ 1.2
LMNA-223ENST00000515459 NHSQ6T4R5 1651 aa22.53■■□□□ 1.2
LMNA-223ENST00000515459 SIN3AQ96ST3 1273 aa22.53■■□□□ 1.2
LMNA-223ENST00000515459 ATF5Q9Y2D1 282 aaPredicted RBP22.52■■□□□ 1.2
LMNA-223ENST00000515459 USP54Q70EL1 1684 aa22.52■■□□□ 1.2
LMNA-223ENST00000515459 LTN1O94822 1766 aa22.5■■□□□ 1.19
LMNA-223ENST00000515459 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.5■■□□□ 1.19
LMNA-223ENST00000515459 USP31Q70CQ4 1352 aa22.5■■□□□ 1.19
LMNA-223ENST00000515459 NEUROD1Q13562 356 aa22.49■■□□□ 1.19
LMNA-223ENST00000515459 MTFR1LQ9H019 292 aa22.49■■□□□ 1.19
LMNA-223ENST00000515459 ERBB3P21860 1342 aa22.49■■□□□ 1.19
LMNA-223ENST00000515459 NLRP2Q9NX02 1062 aa22.48■■□□□ 1.19
LMNA-223ENST00000515459 SBNO2Q9Y2G9 1366 aa22.48■■□□□ 1.19
LMNA-223ENST00000515459 ACSBG1Q96GR2 724 aa22.47■■□□□ 1.19
LMNA-223ENST00000515459 IL2RBP14784 551 aa22.46■■□□□ 1.19
LMNA-223ENST00000515459 SYT17Q9BSW7 474 aa22.46■■□□□ 1.19
LMNA-223ENST00000515459 FHDC1Q9C0D6 1143 aaPredicted RBP22.46■■□□□ 1.19
LMNA-223ENST00000515459 BTAF1O14981 1849 aa22.45■■□□□ 1.19
LMNA-223ENST00000515459 NME9Q86XW9 330 aa22.45■■□□□ 1.18
LMNA-223ENST00000515459 PAPPAQ13219 1627 aa22.44■■□□□ 1.18
LMNA-223ENST00000515459 CD163L1Q9NR16 1453 aa22.44■■□□□ 1.18
LMNA-223ENST00000515459 SGIP1Q9BQI5 828 aa22.43■■□□□ 1.18
LMNA-223ENST00000515459 KAT6BQ8WYB5 2073 aa22.43■■□□□ 1.18
LMNA-223ENST00000515459 HDGFL2Q7Z4V5 671 aaPredicted RBP22.42■■□□□ 1.18
LMNA-223ENST00000515459 TMC1Q8TDI8 760 aa22.42■■□□□ 1.18
LMNA-223ENST00000515459 ANKRD24Q8TF21 1146 aa22.42■■□□□ 1.18
LMNA-223ENST00000515459 CHD4Q14839 1912 aa22.41■■□□□ 1.18
LMNA-223ENST00000515459 EDC4Q6P2E9 1401 aaKnown RBP22.4■■□□□ 1.18
LMNA-223ENST00000515459 ZNF784Q8NCA9 323 aaPredicted RBP22.39■■□□□ 1.17
LMNA-223ENST00000515459 ARXQ96QS3 562 aa22.39■■□□□ 1.17
LMNA-223ENST00000515459 CARD11Q9BXL7 1154 aa22.39■■□□□ 1.17
LMNA-223ENST00000515459 SLC12A5Q9H2X9 1139 aa22.38■■□□□ 1.17
LMNA-223ENST00000515459 TERF2IPQ9NYB0 399 aa22.37■■□□□ 1.17
LMNA-223ENST00000515459 FAM208AQ9UK61 1670 aaKnown RBP22.36■■□□□ 1.17
LMNA-223ENST00000515459 ZNF827Q17R98 1081 aa22.36■■□□□ 1.17
LMNA-223ENST00000515459 MAP3K5Q99683 1374 aa22.36■■□□□ 1.17
LMNA-223ENST00000515459 LRRC4BQ9NT99 713 aa22.35■■□□□ 1.17
LMNA-223ENST00000515459 A0A1W2PP64 1363 aa22.35■■□□□ 1.17
LMNA-223ENST00000515459 QSER1Q2KHR3 1735 aa22.34■■□□□ 1.17
LMNA-223ENST00000515459 UTRNP46939 3433 aa22.34■■□□□ 1.17
LMNA-223ENST00000515459 IP6K1Q92551 441 aa22.33■■□□□ 1.17
LMNA-223ENST00000515459 SLC27A3Q5K4L6 730 aa22.32■■□□□ 1.16
LMNA-223ENST00000515459 DDX54Q8TDD1 881 aaKnown RBP22.32■■□□□ 1.16
LMNA-223ENST00000515459 SLC16A10Q8TF71 515 aa22.31■■□□□ 1.16
LMNA-223ENST00000515459 AKT1S1Q96B36 256 aa22.31■■□□□ 1.16
LMNA-223ENST00000515459 PUS7Q96PZ0 661 aaKnown RBP22.31■■□□□ 1.16
LMNA-223ENST00000515459 LTV1Q96GA3 475 aaPredicted RBP22.3■■□□□ 1.16
LMNA-223ENST00000515459 COL24A1Q17RW2 1714 aa22.28■■□□□ 1.16
LMNA-223ENST00000515459 DOT1LQ8TEK3 1739 aa22.28■■□□□ 1.16
LMNA-223ENST00000515459 TUBGCP6Q96RT7 1819 aa22.27■■□□□ 1.16
LMNA-223ENST00000515459 POLD1P28340 1107 aa22.27■■□□□ 1.16
LMNA-223ENST00000515459 GPR162Q16538 588 aa22.27■■□□□ 1.16
LMNA-223ENST00000515459 SYTL4Q96C24 671 aaPredicted RBP22.27■■□□□ 1.16
LMNA-223ENST00000515459 PNPLA7Q6ZV29 1317 aa22.27■■□□□ 1.16
LMNA-223ENST00000515459 ANKRD36BQ8N2N9 1353 aa22.26■■□□□ 1.15
LMNA-223ENST00000515459 LY75O60449 1722 aa22.26■■□□□ 1.15
LMNA-223ENST00000515459 RGPD2P0DJD1 1756 aa22.25■■□□□ 1.15
LMNA-223ENST00000515459 PRIM1P49642 420 aaKnown RBP22.25■■□□□ 1.15
LMNA-223ENST00000515459 KLHL34Q8N239 644 aa22.25■■□□□ 1.15
LMNA-223ENST00000515459 COG3Q96JB2 828 aa22.25■■□□□ 1.15
LMNA-223ENST00000515459 TFCP2L1Q9NZI6 479 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 202.3 ms