RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 NSD3Q9BZ95 1437 aa10.58□□□□□ -0.72
LIMCH1-219ENST00000514096 ATP7BP35670 1465 aa10.58□□□□□ -0.72
LIMCH1-219ENST00000514096 MAP3K19Q56UN5 1328 aa10.57□□□□□ -0.72
LIMCH1-219ENST00000514096 DCCP43146 1447 aa10.57□□□□□ -0.72
LIMCH1-219ENST00000514096 ZNF330Q9Y3S2 320 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-219ENST00000514096 TECPR2O15040 1411 aa10.57□□□□□ -0.72
LIMCH1-219ENST00000514096 NWD1Q149M9 1564 aa10.57□□□□□ -0.72
LIMCH1-219ENST00000514096 CLSPNQ9HAW4 1339 aa10.57□□□□□ -0.72
LIMCH1-219ENST00000514096 NCOA3Q9Y6Q9 1424 aa10.56□□□□□ -0.72
LIMCH1-219ENST00000514096 EXOC5O00471 708 aa10.56□□□□□ -0.72
LIMCH1-219ENST00000514096 KCNQ2O43526 872 aa10.56□□□□□ -0.72
LIMCH1-219ENST00000514096 NRXN1Q9ULB1 1477 aa10.56□□□□□ -0.72
LIMCH1-219ENST00000514096 MPRIPQ6WCQ1 1025 aa10.55□□□□□ -0.72
LIMCH1-219ENST00000514096 TCP11L2Q8N4U5 519 aa10.55□□□□□ -0.72
LIMCH1-219ENST00000514096 KCNH5Q8NCM2 988 aa10.55□□□□□ -0.72
LIMCH1-219ENST00000514096 RAPGEF4Q8WZA2 1011 aa10.55□□□□□ -0.72
LIMCH1-219ENST00000514096 CGNL1Q0VF96 1302 aa10.55□□□□□ -0.72
LIMCH1-219ENST00000514096 IQSEC2Q5JU85 1478 aa10.55□□□□□ -0.72
LIMCH1-219ENST00000514096 SMIM5Q71RC9 77 aa10.55□□□□□ -0.72
LIMCH1-219ENST00000514096 FNBP4Q8N3X1 1017 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-219ENST00000514096 USP6P35125 1406 aa10.55□□□□□ -0.72
LIMCH1-219ENST00000514096 ZNF428Q96B54 188 aa10.54□□□□□ -0.72
LIMCH1-219ENST00000514096 WASHC2AQ641Q2 1341 aa10.54□□□□□ -0.72
LIMCH1-219ENST00000514096 UPF1Q92900 1129 aaKnown RBP eCLIP10.54□□□□□ -0.72
LIMCH1-219ENST00000514096 TULP4Q9NRJ4 1543 aa10.54□□□□□ -0.72
LIMCH1-219ENST00000514096 PAXIP1Q6ZW49 1069 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-219ENST00000514096 RALGAPBQ86X10 1494 aa10.53□□□□□ -0.72
LIMCH1-219ENST00000514096 MTHFSP49914 203 aa10.53□□□□□ -0.72
LIMCH1-219ENST00000514096 NBPF6Q5VWK0 638 aa10.53□□□□□ -0.72
LIMCH1-219ENST00000514096 ARHGEF25Q86VW2 580 aa10.53□□□□□ -0.72
LIMCH1-219ENST00000514096 NBPF4Q96M43 638 aa10.53□□□□□ -0.72
LIMCH1-219ENST00000514096 PXDNQ92626 1479 aa10.53□□□□□ -0.72
LIMCH1-219ENST00000514096 AEBP1Q8IUX7 1158 aa10.53□□□□□ -0.72
LIMCH1-219ENST00000514096 COL16A1Q07092 1604 aaPredicted RBP10.52□□□□□ -0.72
LIMCH1-219ENST00000514096 R3HDM1Q15032 1099 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-219ENST00000514096 IL27Q8NEV9 243 aa10.52□□□□□ -0.73
LIMCH1-219ENST00000514096 VPS72Q15906 364 aa10.51□□□□□ -0.73
LIMCH1-219ENST00000514096 EZH2Q15910 746 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-219ENST00000514096 ZMYND15Q9H091 742 aa10.51□□□□□ -0.73
LIMCH1-219ENST00000514096 HOXC9P31274 260 aa10.51□□□□□ -0.73
LIMCH1-219ENST00000514096 SULT6B1Q6IMI4 303 aa10.51□□□□□ -0.73
LIMCH1-219ENST00000514096 HOMEZQ8IX15 550 aa10.51□□□□□ -0.73
LIMCH1-219ENST00000514096 IFT172Q9UG01 1749 aa10.51□□□□□ -0.73
LIMCH1-219ENST00000514096 SETD1AO15047 1707 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-219ENST00000514096 QRICH2Q9H0J4 1663 aa10.51□□□□□ -0.73
LIMCH1-219ENST00000514096 CDC42BPGQ6DT37 1551 aa10.5□□□□□ -0.73
LIMCH1-219ENST00000514096 ANKARQ7Z5J8 1434 aa10.5□□□□□ -0.73
LIMCH1-219ENST00000514096 U2AF1L5P0DN76 240 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-219ENST00000514096 U2AF1Q01081 240 aaKnown RBP eCLIP10.5□□□□□ -0.73
LIMCH1-219ENST00000514096 BCL9LQ86UU0 1499 aa10.5□□□□□ -0.73
LIMCH1-219ENST00000514096 ARHGEF28Q8N1W1 1705 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-219ENST00000514096 SBNO1A3KN83 1393 aa10.5□□□□□ -0.73
LIMCH1-219ENST00000514096 PTCD1O75127 700 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-219ENST00000514096 SBNO2Q9Y2G9 1366 aa10.49□□□□□ -0.73
LIMCH1-219ENST00000514096 PRIM1P49642 420 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-219ENST00000514096 RTL5Q5HYW3 569 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-219ENST00000514096 RBM42Q9BTD8 480 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-219ENST00000514096 TRPM1Q7Z4N2 1603 aa10.49□□□□□ -0.73
LIMCH1-219ENST00000514096 SPATA31A1Q5TZJ5 1347 aa10.49□□□□□ -0.73
LIMCH1-219ENST00000514096 IL2RBP14784 551 aa10.49□□□□□ -0.73
LIMCH1-219ENST00000514096 TTC21AQ8NDW8 1320 aa10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 PHF14O94880 888 aa10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 BAG6P46379 1132 aa10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 RRP7AQ9Y3A4 280 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 LAS1LQ9Y4W2 734 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 SPATA31A5Q5VU36 1347 aa10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 SPATA31A7Q8IWB4 1347 aa10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 TATP17735 454 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 CCDC146Q8IYE0 955 aa10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 POLKQ9UBT6 870 aa10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 TAOK2Q9UL54 1235 aa10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 RGS12O14924 1447 aa10.48□□□□□ -0.73
LIMCH1-219ENST00000514096 MARCH10Q8NA82 808 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-219ENST00000514096 POLR3AO14802 1390 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-219ENST00000514096 ERBB3P21860 1342 aa10.47□□□□□ -0.73
LIMCH1-219ENST00000514096 IP6K1Q92551 441 aa10.46□□□□□ -0.73
LIMCH1-219ENST00000514096 EYA1Q99502 592 aa10.46□□□□□ -0.73
LIMCH1-219ENST00000514096 ATF5Q9Y2D1 282 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-219ENST00000514096 WDR17Q8IZU2 1322 aa10.46□□□□□ -0.73
LIMCH1-219ENST00000514096 ANKRD36BQ8N2N9 1353 aa10.46□□□□□ -0.73
LIMCH1-219ENST00000514096 ZBTB7AO95365 584 aa10.46□□□□□ -0.74
LIMCH1-219ENST00000514096 RBM10P98175 930 aaKnown RBP10.46□□□□□ -0.74
LIMCH1-219ENST00000514096 FMN2Q9NZ56 1722 aa10.46□□□□□ -0.74
LIMCH1-219ENST00000514096 LAMC1P11047 1609 aa10.46□□□□□ -0.74
LIMCH1-219ENST00000514096 USP32Q8NFA0 1604 aa10.46□□□□□ -0.74
LIMCH1-219ENST00000514096 DLC1Q96QB1 1528 aa10.45□□□□□ -0.74
LIMCH1-219ENST00000514096 ZCRB1Q8TBF4 217 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-219ENST00000514096 PDGFDQ9GZP0 370 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-219ENST00000514096 FAM9BQ8IZU0 186 aa10.45□□□□□ -0.74
LIMCH1-219ENST00000514096 NGEFQ8N5V2 710 aa10.45□□□□□ -0.74
LIMCH1-219ENST00000514096 EIF4A2Q14240 407 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-219ENST00000514096 MSL1Q68DK7 614 aa10.45□□□□□ -0.74
LIMCH1-219ENST00000514096 ZNF530Q6P9A1 599 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-219ENST00000514096 IRX6P78412 446 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-219ENST00000514096 DCTN1Q14203 1278 aa10.44□□□□□ -0.74
LIMCH1-219ENST00000514096 CCDC7Q96M83 1385 aa10.44□□□□□ -0.74
LIMCH1-219ENST00000514096 AHDC1Q5TGY3 1603 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-219ENST00000514096 FAM196AQ6ZSG2 479 aa10.44□□□□□ -0.74
LIMCH1-219ENST00000514096 SSH2Q76I76 1423 aa10.43□□□□□ -0.74
LIMCH1-219ENST00000514096 CAMTA1Q9Y6Y1 1673 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms