RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 RPGRIP1LQ68CZ1 1315 aa10.76□□□□□ -0.69
USP46-208ENST00000512656 HFM1A2PYH4 1435 aa10.75□□□□□ -0.69
USP46-208ENST00000512656 BRINP3Q76B58 766 aa10.75□□□□□ -0.69
USP46-208ENST00000512656 FBXW7Q969H0 707 aa10.75□□□□□ -0.69
USP46-208ENST00000512656 VPS9D1Q9Y2B5 631 aa10.75□□□□□ -0.69
USP46-208ENST00000512656 COL16A1Q07092 1604 aaPredicted RBP10.75□□□□□ -0.69
USP46-208ENST00000512656 AHDC1Q5TGY3 1603 aaPredicted RBP10.75□□□□□ -0.69
USP46-208ENST00000512656 METP08581 1390 aa10.75□□□□□ -0.69
USP46-208ENST00000512656 NEXMIFQ5QGS0 1516 aa10.74□□□□□ -0.69
USP46-208ENST00000512656 CLTCL1P53675 1640 aa10.73□□□□□ -0.69
USP46-208ENST00000512656 NRXN3Q9Y4C0 1643 aa10.73□□□□□ -0.69
USP46-208ENST00000512656 XRN1Q8IZH2 1706 aaKnown RBP10.73□□□□□ -0.69
USP46-208ENST00000512656 PHF14O94880 888 aa10.73□□□□□ -0.69
USP46-208ENST00000512656 ZNF772Q68DY9 489 aaPredicted RBP10.73□□□□□ -0.69
USP46-208ENST00000512656 STAC3Q96MF2 364 aa10.73□□□□□ -0.69
USP46-208ENST00000512656 HCSTQ9UBK5 93 aa10.73□□□□□ -0.69
USP46-208ENST00000512656 ADGRL3Q9HAR2 1447 aa10.73□□□□□ -0.69
USP46-208ENST00000512656 LRRC59Q96AG4 307 aaKnown RBP10.72□□□□□ -0.69
USP46-208ENST00000512656 ADAM33Q9BZ11 813 aa10.72□□□□□ -0.69
USP46-208ENST00000512656 KIF1BO60333 1816 aa10.72□□□□□ -0.69
USP46-208ENST00000512656 MST1RQ04912 1400 aa10.71□□□□□ -0.69
USP46-208ENST00000512656 TYW1BQ6NUM6 668 aa10.71□□□□□ -0.69
USP46-208ENST00000512656 PAXIP1Q6ZW49 1069 aaPredicted RBP10.71□□□□□ -0.69
USP46-208ENST00000512656 ZBED2Q9BTP6 218 aa10.71□□□□□ -0.69
USP46-208ENST00000512656 ACIN1Q9UKV3 1341 aaKnown RBP10.71□□□□□ -0.69
USP46-208ENST00000512656 PCDHGA10Q9Y5H3 936 aa10.71□□□□□ -0.69
USP46-208ENST00000512656 ASXL1Q8IXJ9 1541 aa10.7□□□□□ -0.7
USP46-208ENST00000512656 PTCH1Q13635 1447 aa10.7□□□□□ -0.7
USP46-208ENST00000512656 SETD5Q9C0A6 1442 aa10.7□□□□□ -0.7
USP46-208ENST00000512656 SHPRHQ149N8 1683 aa10.69□□□□□ -0.7
USP46-208ENST00000512656 NUTM2BA6NNL0 878 aaPredicted RBP10.69□□□□□ -0.7
USP46-208ENST00000512656 NUTM2EB1AL46 878 aaPredicted RBP10.69□□□□□ -0.7
USP46-208ENST00000512656 DPYSL4O14531 572 aa10.69□□□□□ -0.7
USP46-208ENST00000512656 NUTM2AQ8IVF1 878 aaPredicted RBP10.69□□□□□ -0.7
USP46-208ENST00000512656 EPAS1Q99814 870 aa10.69□□□□□ -0.7
USP46-208ENST00000512656 LRP6O75581 1613 aa10.69□□□□□ -0.7
USP46-208ENST00000512656 BHMG1C9JSJ3 638 aaPredicted RBP10.68□□□□□ -0.7
USP46-208ENST00000512656 CFAP44Q96MT7 982 aa10.68□□□□□ -0.7
USP46-208ENST00000512656 CCDC144AA2RUR9 1427 aa10.67□□□□□ -0.7
USP46-208ENST00000512656 PRAG1Q86YV5 1406 aa10.67□□□□□ -0.7
USP46-208ENST00000512656 PPP1R3GB7ZBB8 358 aa10.67□□□□□ -0.7
USP46-208ENST00000512656 ARIH1Q9Y4X5 557 aaPredicted RBP10.67□□□□□ -0.7
USP46-208ENST00000512656 C1orf167Q5SNV9 1468 aa10.67□□□□□ -0.7
USP46-208ENST00000512656 ROBO2Q9HCK4 1378 aa10.66□□□□□ -0.7
USP46-208ENST00000512656 RXRBP28702 533 aa10.66□□□□□ -0.7
USP46-208ENST00000512656 NHSL1Q5SYE7 1610 aa10.66□□□□□ -0.7
USP46-208ENST00000512656 ANKRD30BQ9BXX2 1392 aa10.65□□□□□ -0.7
USP46-208ENST00000512656 SPDYE16A6NNV3 312 aaPredicted RBP10.65□□□□□ -0.7
USP46-208ENST00000512656 MPHOSPH9Q99550 1183 aa10.65□□□□□ -0.7
USP46-208ENST00000512656 NALCNQ8IZF0 1738 aa10.64□□□□□ -0.71
USP46-208ENST00000512656 AFF2P51816 1311 aa10.64□□□□□ -0.71
USP46-208ENST00000512656 PDIA6Q15084 440 aa10.64□□□□□ -0.71
USP46-208ENST00000512656 E2F4Q16254 413 aa10.64□□□□□ -0.71
USP46-208ENST00000512656 RGL3Q3MIN7 710 aa10.64□□□□□ -0.71
USP46-208ENST00000512656 DDX17Q92841 729 aaKnown RBP10.64□□□□□ -0.71
USP46-208ENST00000512656 WDR70Q9NW82 654 aa10.64□□□□□ -0.71
USP46-208ENST00000512656 PNPLA6Q8IY17 1366 aa10.64□□□□□ -0.71
USP46-208ENST00000512656 C8orf37Q96NL8 207 aa10.63□□□□□ -0.71
USP46-208ENST00000512656 ORAI2Q96SN7 254 aa10.63□□□□□ -0.71
USP46-208ENST00000512656 NBPF3Q9H094 633 aa10.63□□□□□ -0.71
USP46-208ENST00000512656 PPLO60437 1756 aa10.62□□□□□ -0.71
USP46-208ENST00000512656 SOS2Q07890 1332 aaPredicted RBP10.62□□□□□ -0.71
USP46-208ENST00000512656 NPHP3Q7Z494 1330 aa10.62□□□□□ -0.71
USP46-208ENST00000512656 ADGRF5Q8IZF2 1346 aa10.62□□□□□ -0.71
USP46-208ENST00000512656 SPATA31E1Q6ZUB1 1445 aa10.62□□□□□ -0.71
USP46-208ENST00000512656 ONECUT3O60422 494 aaPredicted RBP10.62□□□□□ -0.71
USP46-208ENST00000512656 NGLY1Q96IV0 654 aa10.62□□□□□ -0.71
USP46-208ENST00000512656 QTRT2Q9H974 415 aaKnown RBP10.62□□□□□ -0.71
USP46-208ENST00000512656 STK26Q9P289 416 aa10.62□□□□□ -0.71
USP46-208ENST00000512656 CDK12Q9NYV4 1490 aaPredicted RBP10.61□□□□□ -0.71
USP46-208ENST00000512656 SETD1AO15047 1707 aaKnown RBP10.61□□□□□ -0.71
USP46-208ENST00000512656 RBM6P78332 1123 aaKnown RBP10.61□□□□□ -0.71
USP46-208ENST00000512656 ESCO1Q5FWF5 840 aa10.61□□□□□ -0.71
USP46-208ENST00000512656 MRPL50Q8N5N7 158 aaKnown RBP10.61□□□□□ -0.71
USP46-208ENST00000512656 KCTD12Q96CX2 325 aaKnown RBP10.61□□□□□ -0.71
USP46-208ENST00000512656 RABGEF1Q9UJ41 708 aa10.61□□□□□ -0.71
USP46-208ENST00000512656 LRPPRCP42704 1394 aaKnown RBP10.61□□□□□ -0.71
USP46-208ENST00000512656 TECPR2O15040 1411 aa10.6□□□□□ -0.71
USP46-208ENST00000512656 ADAMTS2O95450 1211 aa10.6□□□□□ -0.71
USP46-208ENST00000512656 ABCC11Q96J66 1382 aa10.6□□□□□ -0.71
USP46-208ENST00000512656 CDC42BPGQ6DT37 1551 aa10.6□□□□□ -0.71
USP46-208ENST00000512656 LAMC1P11047 1609 aa10.59□□□□□ -0.71
USP46-208ENST00000512656 C6orf132Q5T0Z8 1188 aa10.59□□□□□ -0.71
USP46-208ENST00000512656 COL9A1P20849 921 aa10.58□□□□□ -0.72
USP46-208ENST00000512656 TMEM132EQ6IEE7 984 aa10.58□□□□□ -0.72
USP46-208ENST00000512656 WAPLQ7Z5K2 1190 aa10.58□□□□□ -0.72
USP46-208ENST00000512656 SIRT1Q96EB6 747 aa10.58□□□□□ -0.72
USP46-208ENST00000512656 PIK3C2GO75747 1445 aa10.58□□□□□ -0.72
USP46-208ENST00000512656 GOLGA8CPA6NN73 597 aa10.57□□□□□ -0.72
USP46-208ENST00000512656 FOXO3O43524 673 aa10.57□□□□□ -0.72
USP46-208ENST00000512656 USP21Q9UK80 565 aa10.57□□□□□ -0.72
USP46-208ENST00000512656 YTHDC2Q9H6S0 1430 aaKnown RBP10.57□□□□□ -0.72
USP46-208ENST00000512656 DHX57Q6P158 1386 aaKnown RBP10.56□□□□□ -0.72
USP46-208ENST00000512656 LAPTM4BQ86VI4 370 aa10.56□□□□□ -0.72
USP46-208ENST00000512656 FNBP4Q8N3X1 1017 aaPredicted RBP10.56□□□□□ -0.72
USP46-208ENST00000512656 DDX12PQ92771 950 aa10.56□□□□□ -0.72
USP46-208ENST00000512656 C14orf93Q9H972 538 aaKnown RBP10.56□□□□□ -0.72
USP46-208ENST00000512656 TRPC5Q9UL62 973 aaPredicted RBP10.56□□□□□ -0.72
USP46-208ENST00000512656 NUTM2FA1L443 756 aa10.55□□□□□ -0.72
USP46-208ENST00000512656 THSD4Q6ZMP0 1018 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms