RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 LRP2BPQ9P2M1 347 aa10.55□□□□□ -0.72
VCAN-208ENST00000512590 NOL7Q9UMY1 257 aaKnown RBP10.55□□□□□ -0.72
VCAN-208ENST00000512590 SMC3Q9UQE7 1217 aa10.55□□□□□ -0.72
VCAN-208ENST00000512590 DIAPH1O60610 1272 aaKnown RBP10.55□□□□□ -0.72
VCAN-208ENST00000512590 TOM1O60784 492 aa10.55□□□□□ -0.72
VCAN-208ENST00000512590 TDO2P48775 406 aa10.54□□□□□ -0.72
VCAN-208ENST00000512590 ST5P78524 1137 aa10.54□□□□□ -0.72
VCAN-208ENST00000512590 ERCC4Q92889 916 aaPredicted RBP10.54□□□□□ -0.72
VCAN-208ENST00000512590 NINLQ9Y2I6 1382 aa10.54□□□□□ -0.72
VCAN-208ENST00000512590 UBTFL1P0CB47 393 aaPredicted RBP10.54□□□□□ -0.72
VCAN-208ENST00000512590 NAT10Q9H0A0 1025 aaKnown RBP10.54□□□□□ -0.72
VCAN-208ENST00000512590 GOLGA6L10A6NI86 522 aa10.54□□□□□ -0.72
VCAN-208ENST00000512590 B4DLN1 442 aa10.54□□□□□ -0.72
VCAN-208ENST00000512590 STARD3NLO95772 234 aa10.54□□□□□ -0.72
VCAN-208ENST00000512590 MRPL12P52815 198 aaKnown RBP10.54□□□□□ -0.72
VCAN-208ENST00000512590 CAVIN4Q5BKX8 364 aa10.54□□□□□ -0.72
VCAN-208ENST00000512590 OTUD6BQ8N6M0 293 aa10.54□□□□□ -0.72
VCAN-208ENST00000512590 GTF3C6Q969F1 213 aa10.54□□□□□ -0.72
VCAN-208ENST00000512590 NOP58Q9Y2X3 529 aaKnown RBP10.54□□□□□ -0.72
VCAN-208ENST00000512590 PDS5BQ9NTI5 1447 aa10.53□□□□□ -0.72
VCAN-208ENST00000512590 SSFA2P28290 1259 aa10.53□□□□□ -0.72
VCAN-208ENST00000512590 ANKRD18BA2A2Z9 1011 aa10.53□□□□□ -0.72
VCAN-208ENST00000512590 DZIP1Q86YF9 867 aaKnown RBP10.53□□□□□ -0.72
VCAN-208ENST00000512590 FAM200AQ8TCP9 573 aa10.53□□□□□ -0.72
VCAN-208ENST00000512590 REC8O95072 547 aa10.53□□□□□ -0.72
VCAN-208ENST00000512590 PSMA5P28066 241 aa10.53□□□□□ -0.72
VCAN-208ENST00000512590 RABEP1Q15276 862 aa10.53□□□□□ -0.72
VCAN-208ENST00000512590 JDP2Q8WYK2 163 aa10.53□□□□□ -0.72
VCAN-208ENST00000512590 CLASRPQ8N2M8 674 aaKnown RBP10.53□□□□□ -0.72
VCAN-208ENST00000512590 CKAP2LQ8IYA6 745 aa10.52□□□□□ -0.72
VCAN-208ENST00000512590 CEP63Q96MT8 703 aa10.52□□□□□ -0.72
VCAN-208ENST00000512590 H0YHG0 523 aa10.52□□□□□ -0.72
VCAN-208ENST00000512590 CTNNA2P26232 953 aa10.52□□□□□ -0.72
VCAN-208ENST00000512590 CCDC89Q8N998 374 aa10.52□□□□□ -0.72
VCAN-208ENST00000512590 LMAN1P49257 510 aa10.52□□□□□ -0.73
VCAN-208ENST00000512590 PLS1Q14651 629 aa10.52□□□□□ -0.73
VCAN-208ENST00000512590 DZIP1LQ8IYY4 767 aaKnown RBP10.52□□□□□ -0.73
VCAN-208ENST00000512590 UBAC1Q9BSL1 405 aa10.52□□□□□ -0.73
VCAN-208ENST00000512590 MKNK2Q9HBH9 465 aa10.52□□□□□ -0.73
VCAN-208ENST00000512590 BCCIPQ9P287 314 aaKnown RBP eCLIP10.52□□□□□ -0.73
VCAN-208ENST00000512590 KIF4AO95239 1232 aa10.52□□□□□ -0.73
VCAN-208ENST00000512590 ZBTB33Q86T24 672 aa10.52□□□□□ -0.73
VCAN-208ENST00000512590 API5Q9BZZ5 524 aaKnown RBP10.52□□□□□ -0.73
VCAN-208ENST00000512590 RFC4P35249 363 aa10.52□□□□□ -0.73
VCAN-208ENST00000512590 RBM26Q5T8P6 1007 aaKnown RBP10.52□□□□□ -0.73
VCAN-208ENST00000512590 TRMT1LQ7Z2T5 733 aaKnown RBP10.52□□□□□ -0.73
VCAN-208ENST00000512590 UBA5Q9GZZ9 404 aa10.51□□□□□ -0.73
VCAN-208ENST00000512590 NDC80O14777 642 aa10.51□□□□□ -0.73
VCAN-208ENST00000512590 SPINK5Q9NQ38 1064 aaPredicted RBP10.51□□□□□ -0.73
VCAN-208ENST00000512590 KIF20AO95235 890 aa10.51□□□□□ -0.73
VCAN-208ENST00000512590 SMC2O95347 1197 aa10.51□□□□□ -0.73
VCAN-208ENST00000512590 ARHGEF6Q15052 776 aa10.51□□□□□ -0.73
VCAN-208ENST00000512590 SDF4Q9BRK5 362 aa10.51□□□□□ -0.73
VCAN-208ENST00000512590 PRKCSHP14314 528 aaPredicted RBP10.51□□□□□ -0.73
VCAN-208ENST00000512590 HOOK3Q86VS8 718 aa10.51□□□□□ -0.73
VCAN-208ENST00000512590 NLRP13Q86W25 1043 aa10.51□□□□□ -0.73
VCAN-208ENST00000512590 TSPYL1Q9H0U9 437 aa10.51□□□□□ -0.73
VCAN-208ENST00000512590 SAMM50Q9Y512 469 aa10.51□□□□□ -0.73
VCAN-208ENST00000512590 GPHNQ9NQX3 736 aaPredicted RBP10.5□□□□□ -0.73
VCAN-208ENST00000512590 ARGLU1Q9NWB6 273 aaPredicted RBP10.5□□□□□ -0.73
VCAN-208ENST00000512590 TMOD3Q9NYL9 352 aa10.5□□□□□ -0.73
VCAN-208ENST00000512590 GOLGA6L7A0A1B0GV03 622 aa10.5□□□□□ -0.73
VCAN-208ENST00000512590 POGZQ7Z3K3 1410 aa10.5□□□□□ -0.73
VCAN-208ENST00000512590 OGFOD1Q8N543 542 aa10.5□□□□□ -0.73
VCAN-208ENST00000512590 ABCF2Q9UG63 623 aa10.5□□□□□ -0.73
VCAN-208ENST00000512590 TCIRG1Q13488 830 aa10.49□□□□□ -0.73
VCAN-208ENST00000512590 SMC1AQ14683 1233 aaKnown RBP10.49□□□□□ -0.73
VCAN-208ENST00000512590 BRDTQ58F21 947 aaPredicted RBP10.49□□□□□ -0.73
VCAN-208ENST00000512590 BICD1Q96G01 975 aa10.49□□□□□ -0.73
VCAN-208ENST00000512590 STK24Q9Y6E0 443 aa10.49□□□□□ -0.73
VCAN-208ENST00000512590 CNTROBQ8N137 903 aa10.49□□□□□ -0.73
VCAN-208ENST00000512590 PUF60Q9UHX1 559 aaKnown RBP10.49□□□□□ -0.73
VCAN-208ENST00000512590 CEP162Q5TB80 1403 aa10.49□□□□□ -0.73
VCAN-208ENST00000512590 MYL6BP14649 208 aa10.49□□□□□ -0.73
VCAN-208ENST00000512590 RBM27Q9P2N5 1060 aaKnown RBP10.49□□□□□ -0.73
VCAN-208ENST00000512590 PDE4AP27815 886 aa10.49□□□□□ -0.73
VCAN-208ENST00000512590 SIN3AQ96ST3 1273 aa10.49□□□□□ -0.73
VCAN-208ENST00000512590 CTNNBL1Q8WYA6 563 aaPredicted RBP10.48□□□□□ -0.73
VCAN-208ENST00000512590 GJA3Q9Y6H8 435 aa10.48□□□□□ -0.73
VCAN-208ENST00000512590 RCAN3Q9UKA8 241 aa10.48□□□□□ -0.73
VCAN-208ENST00000512590 ST20-MTHFSA0A0A6YYL1 179 aa10.48□□□□□ -0.73
VCAN-208ENST00000512590 MTHFSP49914 203 aa10.48□□□□□ -0.73
VCAN-208ENST00000512590 GAS2L2Q8NHY3 880 aa10.48□□□□□ -0.73
VCAN-208ENST00000512590 INCENPQ9NQS7 918 aa10.48□□□□□ -0.73
VCAN-208ENST00000512590 RB1CC1Q8TDY2 1594 aa10.48□□□□□ -0.73
VCAN-208ENST00000512590 EIF3JO75822 258 aaKnown RBP10.48□□□□□ -0.73
VCAN-208ENST00000512590 HLA-DOAP06340 250 aa10.48□□□□□ -0.73
VCAN-208ENST00000512590 LARP1Q6PKG0 1096 aaKnown RBP10.48□□□□□ -0.73
VCAN-208ENST00000512590 XRCC6P12956 609 aaKnown RBP eCLIP10.47□□□□□ -0.73
VCAN-208ENST00000512590 ZKSCAN2Q63HK3 967 aa10.47□□□□□ -0.73
VCAN-208ENST00000512590 ZNF444Q8N0Y2 327 aaPredicted RBP10.47□□□□□ -0.73
VCAN-208ENST00000512590 EAPPQ56P03 285 aaPredicted RBP10.47□□□□□ -0.73
VCAN-208ENST00000512590 CCDC30Q5VVM6 783 aa10.47□□□□□ -0.73
VCAN-208ENST00000512590 RIPK4P57078 832 aa10.47□□□□□ -0.73
VCAN-208ENST00000512590 STK32BQ9NY57 414 aa10.47□□□□□ -0.73
VCAN-208ENST00000512590 PARP3Q9Y6F1 533 aa10.47□□□□□ -0.73
VCAN-208ENST00000512590 MACROD2A1Z1Q3 448 aa10.47□□□□□ -0.73
VCAN-208ENST00000512590 FKBP4Q02790 459 aaKnown RBP eCLIP10.47□□□□□ -0.73
VCAN-208ENST00000512590 SPATA24Q86W54 205 aa10.47□□□□□ -0.73
VCAN-208ENST00000512590 ALS2CR12Q96Q35 445 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms