RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 THRAP3Q9Y2W1 955 aaKnown RBP15.89■□□□□ 0.13
LIMCH1-214ENST00000512228 TOM1L2Q6ZVM7 507 aa15.88■□□□□ 0.13
LIMCH1-214ENST00000512228 TTC21AQ8NDW8 1320 aa15.88■□□□□ 0.13
LIMCH1-214ENST00000512228 NFAT5O94916 1531 aa15.88■□□□□ 0.13
LIMCH1-214ENST00000512228 PARP4Q9UKK3 1724 aaKnown RBP15.88■□□□□ 0.13
LIMCH1-214ENST00000512228 DISP2A7MBM2 1401 aa15.87■□□□□ 0.13
LIMCH1-214ENST00000512228 R3HDM1Q15032 1099 aaKnown RBP15.87■□□□□ 0.13
LIMCH1-214ENST00000512228 SRCAPQ6ZRS2 3230 aa15.87■□□□□ 0.13
LIMCH1-214ENST00000512228 PEAK1Q9H792 1746 aa15.86■□□□□ 0.13
LIMCH1-214ENST00000512228 FBLN1P23142 703 aa15.86■□□□□ 0.13
LIMCH1-214ENST00000512228 MARCH10Q8NA82 808 aaPredicted RBP15.86■□□□□ 0.13
LIMCH1-214ENST00000512228 KCNH5Q8NCM2 988 aa15.86■□□□□ 0.13
LIMCH1-214ENST00000512228 SBF2Q86WG5 1849 aa15.86■□□□□ 0.13
LIMCH1-214ENST00000512228 WDR17Q8IZU2 1322 aa15.86■□□□□ 0.13
LIMCH1-214ENST00000512228 USP31Q70CQ4 1352 aa15.86■□□□□ 0.13
LIMCH1-214ENST00000512228 LRRC37A3O60309 1634 aa15.84■□□□□ 0.13
LIMCH1-214ENST00000512228 CARD10Q9BWT7 1032 aa15.83■□□□□ 0.12
LIMCH1-214ENST00000512228 A0A1W2PP64 1363 aa15.83■□□□□ 0.12
LIMCH1-214ENST00000512228 WNK3Q9BYP7 1800 aa15.82■□□□□ 0.12
LIMCH1-214ENST00000512228 DDB1Q16531 1140 aa15.82■□□□□ 0.12
LIMCH1-214ENST00000512228 LTN1O94822 1766 aa15.82■□□□□ 0.12
LIMCH1-214ENST00000512228 CSB-PGBD3P0DP91 1061 aa15.81■□□□□ 0.12
LIMCH1-214ENST00000512228 USP54Q70EL1 1684 aa15.81■□□□□ 0.12
LIMCH1-214ENST00000512228 PROM2Q8N271 834 aa15.81■□□□□ 0.12
LIMCH1-214ENST00000512228 PUS7Q96PZ0 661 aaKnown RBP15.81■□□□□ 0.12
LIMCH1-214ENST00000512228 RREB1Q92766 1687 aa15.8■□□□□ 0.12
LIMCH1-214ENST00000512228 HDGFL2Q7Z4V5 671 aaPredicted RBP15.8■□□□□ 0.12
LIMCH1-214ENST00000512228 NUP188Q5SRE5 1749 aa15.8■□□□□ 0.12
LIMCH1-214ENST00000512228 KCNQ2O43526 872 aa15.78■□□□□ 0.12
LIMCH1-214ENST00000512228 TERF2IPQ9NYB0 399 aa15.78■□□□□ 0.12
LIMCH1-214ENST00000512228 LRP5O75197 1615 aa15.78■□□□□ 0.12
LIMCH1-214ENST00000512228 EDC4Q6P2E9 1401 aaKnown RBP15.77■□□□□ 0.12
LIMCH1-214ENST00000512228 OVOS2A0A0J9YW53 1432 aa15.77■□□□□ 0.11
LIMCH1-214ENST00000512228 OVOS2Q6IE36 1432 aa15.77■□□□□ 0.11
LIMCH1-214ENST00000512228 ERBB3P21860 1342 aa15.76■□□□□ 0.11
LIMCH1-214ENST00000512228 EXOC5O00471 708 aa15.76■□□□□ 0.11
LIMCH1-214ENST00000512228 BCL11BQ9C0K0 894 aaPredicted RBP15.76■□□□□ 0.11
LIMCH1-214ENST00000512228 PDGFDQ9GZP0 370 aaPredicted RBP15.76■□□□□ 0.11
LIMCH1-214ENST00000512228 NLRP2Q9NX02 1062 aa15.76■□□□□ 0.11
LIMCH1-214ENST00000512228 OVOS2A0A0G2JMS6 1433 aa15.76■□□□□ 0.11
LIMCH1-214ENST00000512228 ANKRD24Q8TF21 1146 aa15.75■□□□□ 0.11
LIMCH1-214ENST00000512228 PCGF6Q9BYE7 350 aa15.75■□□□□ 0.11
LIMCH1-214ENST00000512228 RGPD2P0DJD1 1756 aa15.75■□□□□ 0.11
LIMCH1-214ENST00000512228 PLSCR1O15162 318 aa15.74■□□□□ 0.11
LIMCH1-214ENST00000512228 LTV1Q96GA3 475 aaPredicted RBP15.74■□□□□ 0.11
LIMCH1-214ENST00000512228 CDCA7Q9BWT1 371 aaPredicted RBP15.74■□□□□ 0.11
LIMCH1-214ENST00000512228 PARD3Q8TEW0 1356 aa15.74■□□□□ 0.11
LIMCH1-214ENST00000512228 USP47Q96K76 1375 aa15.74■□□□□ 0.11
LIMCH1-214ENST00000512228 FYB1O15117 783 aa15.73■□□□□ 0.11
LIMCH1-214ENST00000512228 IP6K1Q92551 441 aa15.73■□□□□ 0.11
LIMCH1-214ENST00000512228 ANO8Q9HCE9 1232 aaPredicted RBP15.73■□□□□ 0.11
LIMCH1-214ENST00000512228 MAP3K19Q56UN5 1328 aa15.72■□□□□ 0.11
LIMCH1-214ENST00000512228 BCL9O00512 1426 aa15.72■□□□□ 0.11
LIMCH1-214ENST00000512228 ACSBG1Q96GR2 724 aa15.72■□□□□ 0.11
LIMCH1-214ENST00000512228 CARD14Q9BXL6 1004 aa15.72■□□□□ 0.11
LIMCH1-214ENST00000512228 KAT6BQ8WYB5 2073 aa15.72■□□□□ 0.11
LIMCH1-214ENST00000512228 CCDC7Q96M83 1385 aa15.72■□□□□ 0.11
LIMCH1-214ENST00000512228 GGNBP2Q9H3C7 697 aa15.71■□□□□ 0.11
LIMCH1-214ENST00000512228 ABCC6O95255 1503 aa15.71■□□□□ 0.11
LIMCH1-214ENST00000512228 IL2RBP14784 551 aa15.7■□□□□ 0.1
LIMCH1-214ENST00000512228 RRS1Q15050 365 aaKnown RBP15.7■□□□□ 0.1
LIMCH1-214ENST00000512228 NBPF14Q5TI25 921 aa15.7■□□□□ 0.1
LIMCH1-214ENST00000512228 C11orf95C9JLR9 678 aaPredicted RBP15.69■□□□□ 0.1
LIMCH1-214ENST00000512228 HOXC9P31274 260 aa15.69■□□□□ 0.1
LIMCH1-214ENST00000512228 TMF1P82094 1093 aa15.69■□□□□ 0.1
LIMCH1-214ENST00000512228 COG3Q96JB2 828 aa15.69■□□□□ 0.1
LIMCH1-214ENST00000512228 ANKRD36BQ8N2N9 1353 aa15.69■□□□□ 0.1
LIMCH1-214ENST00000512228 NINLQ9Y2I6 1382 aa15.68■□□□□ 0.1
LIMCH1-214ENST00000512228 TXNRD1Q16881 649 aa15.68■□□□□ 0.1
LIMCH1-214ENST00000512228 TNS2Q63HR2 1409 aa15.68■□□□□ 0.1
LIMCH1-214ENST00000512228 RGPD3A6NKT7 1758 aaPredicted RBP15.67■□□□□ 0.1
LIMCH1-214ENST00000512228 RGPD4Q7Z3J3 1758 aa15.67■□□□□ 0.1
LIMCH1-214ENST00000512228 NBPF6Q5VWK0 638 aa15.66■□□□□ 0.1
LIMCH1-214ENST00000512228 DDX54Q8TDD1 881 aaKnown RBP15.66■□□□□ 0.1
LIMCH1-214ENST00000512228 NBPF4Q96M43 638 aa15.66■□□□□ 0.1
LIMCH1-214ENST00000512228 FAM208AQ9UK61 1670 aaKnown RBP15.65■□□□□ 0.1
LIMCH1-214ENST00000512228 AMPHP49418 695 aa15.65■□□□□ 0.1
LIMCH1-214ENST00000512228 MYOM1P52179 1685 aa15.64■□□□□ 0.09
LIMCH1-214ENST00000512228 NHSQ6T4R5 1651 aa15.64■□□□□ 0.09
LIMCH1-214ENST00000512228 SLC24A1O60721 1099 aa15.64■□□□□ 0.09
LIMCH1-214ENST00000512228 HSP90AB2PQ58FF8 381 aa15.64■□□□□ 0.09
LIMCH1-214ENST00000512228 CASZ1Q86V15 1759 aa15.64■□□□□ 0.09
LIMCH1-214ENST00000512228 BTAF1O14981 1849 aa15.64■□□□□ 0.09
LIMCH1-214ENST00000512228 USHBP1Q8N6Y0 703 aa15.63■□□□□ 0.09
LIMCH1-214ENST00000512228 LRRC4BQ9NT99 713 aa15.63■□□□□ 0.09
LIMCH1-214ENST00000512228 SHANK3Q9BYB0 1731 aa15.63■□□□□ 0.09
LIMCH1-214ENST00000512228 KCNQ4P56696 695 aa15.62■□□□□ 0.09
LIMCH1-214ENST00000512228 TIMELESSQ9UNS1 1208 aa15.62■□□□□ 0.09
LIMCH1-214ENST00000512228 ZBTB7AO95365 584 aa15.61■□□□□ 0.09
LIMCH1-214ENST00000512228 SLC15A2Q16348 729 aa15.61■□□□□ 0.09
LIMCH1-214ENST00000512228 SPON1Q9HCB6 807 aa15.61■□□□□ 0.09
LIMCH1-214ENST00000512228 MEGF6O75095 1541 aa15.61■□□□□ 0.09
LIMCH1-214ENST00000512228 KIF20BQ96Q89 1820 aa15.6■□□□□ 0.09
LIMCH1-214ENST00000512228 PRIM1P49642 420 aaKnown RBP15.6■□□□□ 0.09
LIMCH1-214ENST00000512228 ATF5Q9Y2D1 282 aaPredicted RBP15.6■□□□□ 0.09
LIMCH1-214ENST00000512228 PTGER2P43116 358 aa15.59■□□□□ 0.09
LIMCH1-214ENST00000512228 EMILIN1Q9Y6C2 1016 aa15.59■□□□□ 0.09
LIMCH1-214ENST00000512228 ZNF827Q17R98 1081 aa15.58■□□□□ 0.08
LIMCH1-214ENST00000512228 ZCRB1Q8TBF4 217 aaKnown RBP15.58■□□□□ 0.08
LIMCH1-214ENST00000512228 MAP2P11137 1827 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms