RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 KCNH5Q8NCM2 988 aa23.08■■□□□ 1.29
DDX41-213ENST00000512027 OVOS2A0A0J9YW53 1432 aa23.08■■□□□ 1.28
DDX41-213ENST00000512027 OVOS2Q6IE36 1432 aa23.08■■□□□ 1.28
DDX41-213ENST00000512027 ANKRD36BQ8N2N9 1353 aa23.07■■□□□ 1.28
DDX41-213ENST00000512027 WNK3Q9BYP7 1800 aa23.05■■□□□ 1.28
DDX41-213ENST00000512027 CRB1P82279 1406 aa23.05■■□□□ 1.28
DDX41-213ENST00000512027 KIF20BQ96Q89 1820 aa23.04■■□□□ 1.28
DDX41-213ENST00000512027 HSPA5P11021 654 aaKnown RBP23.03■■□□□ 1.28
DDX41-213ENST00000512027 TCP11L2Q8N4U5 519 aa23.02■■□□□ 1.28
DDX41-213ENST00000512027 PARP4Q9UKK3 1724 aaKnown RBP23.02■■□□□ 1.28
DDX41-213ENST00000512027 BLMP54132 1417 aaPredicted RBP23.01■■□□□ 1.27
DDX41-213ENST00000512027 CDCA8Q53HL2 280 aa23.01■■□□□ 1.27
DDX41-213ENST00000512027 ABCC6O95255 1503 aa23■■□□□ 1.27
DDX41-213ENST00000512027 EIF4G2P78344 907 aaKnown RBP eCLIP23■■□□□ 1.27
DDX41-213ENST00000512027 BARGINQ6ZT62 677 aa23■■□□□ 1.27
DDX41-213ENST00000512027 TOM1L2Q6ZVM7 507 aa23■■□□□ 1.27
DDX41-213ENST00000512027 POLR3GLQ9BT43 218 aa23■■□□□ 1.27
DDX41-213ENST00000512027 WDR17Q8IZU2 1322 aa23■■□□□ 1.27
DDX41-213ENST00000512027 LRRC37A3O60309 1634 aa23■■□□□ 1.27
DDX41-213ENST00000512027 FBLN1P23142 703 aa22.98■■□□□ 1.27
DDX41-213ENST00000512027 RGPD1P0DJD0 1748 aa22.97■■□□□ 1.27
DDX41-213ENST00000512027 TNS1Q9HBL0 1735 aaKnown RBP22.97■■□□□ 1.27
DDX41-213ENST00000512027 CSB-PGBD3P0DP91 1061 aa22.97■■□□□ 1.27
DDX41-213ENST00000512027 DEFB132Q7Z7B7 95 aa22.97■■□□□ 1.27
DDX41-213ENST00000512027 GGNBP2Q9H3C7 697 aa22.97■■□□□ 1.27
DDX41-213ENST00000512027 COG3Q96JB2 828 aa22.96■■□□□ 1.27
DDX41-213ENST00000512027 CCDC125Q86Z20 511 aa22.95■■□□□ 1.26
DDX41-213ENST00000512027 CARD14Q9BXL6 1004 aa22.95■■□□□ 1.26
DDX41-213ENST00000512027 NSD3Q9BZ95 1437 aa22.95■■□□□ 1.26
DDX41-213ENST00000512027 THRAP3Q9Y2W1 955 aaKnown RBP22.95■■□□□ 1.26
DDX41-213ENST00000512027 FYB1O15117 783 aa22.94■■□□□ 1.26
DDX41-213ENST00000512027 ERBB3P21860 1342 aa22.92■■□□□ 1.26
DDX41-213ENST00000512027 PDE3BQ13370 1112 aa22.92■■□□□ 1.26
DDX41-213ENST00000512027 SF3B2Q13435 895 aaKnown RBP22.91■■□□□ 1.26
DDX41-213ENST00000512027 RGPD2P0DJD1 1756 aa22.91■■□□□ 1.26
DDX41-213ENST00000512027 MAP3K19Q56UN5 1328 aa22.9■■□□□ 1.26
DDX41-213ENST00000512027 ANKRD24Q8TF21 1146 aa22.9■■□□□ 1.26
DDX41-213ENST00000512027 CARD10Q9BWT7 1032 aa22.9■■□□□ 1.26
DDX41-213ENST00000512027 PEAK1Q9H792 1746 aa22.9■■□□□ 1.26
DDX41-213ENST00000512027 DISP2A7MBM2 1401 aa22.9■■□□□ 1.26
DDX41-213ENST00000512027 C11orf95C9JLR9 678 aaPredicted RBP22.89■■□□□ 1.25
DDX41-213ENST00000512027 RRS1Q15050 365 aaKnown RBP22.88■■□□□ 1.25
DDX41-213ENST00000512027 NLRP2Q9NX02 1062 aa22.88■■□□□ 1.25
DDX41-213ENST00000512027 TRIM37O94972 964 aa22.87■■□□□ 1.25
DDX41-213ENST00000512027 IP6K1Q92551 441 aa22.87■■□□□ 1.25
DDX41-213ENST00000512027 LTV1Q96GA3 475 aaPredicted RBP22.87■■□□□ 1.25
DDX41-213ENST00000512027 FAM208AQ9UK61 1670 aaKnown RBP22.87■■□□□ 1.25
DDX41-213ENST00000512027 DDB1Q16531 1140 aa22.86■■□□□ 1.25
DDX41-213ENST00000512027 FAM196AQ6ZSG2 479 aa22.86■■□□□ 1.25
DDX41-213ENST00000512027 SBF2Q86WG5 1849 aa22.86■■□□□ 1.25
DDX41-213ENST00000512027 CCDC7Q96M83 1385 aa22.86■■□□□ 1.25
DDX41-213ENST00000512027 HOXC9P31274 260 aa22.85■■□□□ 1.25
DDX41-213ENST00000512027 AMPHP49418 695 aa22.84■■□□□ 1.25
DDX41-213ENST00000512027 ANKRD26Q9UPS8 1709 aa22.84■■□□□ 1.25
DDX41-213ENST00000512027 BAG6P46379 1132 aa22.83■■□□□ 1.25
DDX41-213ENST00000512027 EN1Q05925 392 aaPredicted RBP22.83■■□□□ 1.25
DDX41-213ENST00000512027 OVOS2A0A0G2JMS6 1433 aa22.82■■□□□ 1.24
DDX41-213ENST00000512027 MARCH10Q8NA82 808 aaPredicted RBP22.81■■□□□ 1.24
DDX41-213ENST00000512027 RTL1A6NKG5 1358 aa22.8■■□□□ 1.24
DDX41-213ENST00000512027 CDCA7Q9BWT1 371 aaPredicted RBP22.8■■□□□ 1.24
DDX41-213ENST00000512027 TNS2Q63HR2 1409 aa22.8■■□□□ 1.24
DDX41-213ENST00000512027 MAP2P11137 1827 aaKnown RBP22.8■■□□□ 1.24
DDX41-213ENST00000512027 PANK3Q9H999 370 aa22.79■■□□□ 1.24
DDX41-213ENST00000512027 EMILIN1Q9Y6C2 1016 aa22.78■■□□□ 1.24
DDX41-213ENST00000512027 CGNL1Q0VF96 1302 aa22.78■■□□□ 1.24
DDX41-213ENST00000512027 APBA3O96018 575 aa22.77■■□□□ 1.24
DDX41-213ENST00000512027 EZH2Q15910 746 aaKnown RBP22.77■■□□□ 1.24
DDX41-213ENST00000512027 KIF7Q2M1P5 1343 aa22.77■■□□□ 1.24
DDX41-213ENST00000512027 EXOC5O00471 708 aa22.76■■□□□ 1.23
DDX41-213ENST00000512027 IL2RBP14784 551 aa22.76■■□□□ 1.23
DDX41-213ENST00000512027 PTF1AQ7RTS3 328 aa22.76■■□□□ 1.23
DDX41-213ENST00000512027 RREB1Q92766 1687 aa22.76■■□□□ 1.23
DDX41-213ENST00000512027 HSP90AB2PQ58FF8 381 aa22.75■■□□□ 1.23
DDX41-213ENST00000512027 USHBP1Q8N6Y0 703 aa22.74■■□□□ 1.23
DDX41-213ENST00000512027 FLT4P35916 1363 aa22.74■■□□□ 1.23
DDX41-213ENST00000512027 NUP188Q5SRE5 1749 aa22.74■■□□□ 1.23
DDX41-213ENST00000512027 SHANK3Q9BYB0 1731 aa22.74■■□□□ 1.23
DDX41-213ENST00000512027 TNNT2P45379 298 aaPredicted RBP22.73■■□□□ 1.23
DDX41-213ENST00000512027 CAMKK2Q96RR4 588 aa22.73■■□□□ 1.23
DDX41-213ENST00000512027 PPM1GO15355 546 aaPredicted RBP22.72■■□□□ 1.23
DDX41-213ENST00000512027 NBPF6Q5VWK0 638 aa22.72■■□□□ 1.23
DDX41-213ENST00000512027 NBPF4Q96M43 638 aa22.72■■□□□ 1.23
DDX41-213ENST00000512027 INSRP06213 1382 aa22.72■■□□□ 1.23
DDX41-213ENST00000512027 MEGF6O75095 1541 aa22.72■■□□□ 1.23
DDX41-213ENST00000512027 SMG6Q86US8 1419 aaKnown RBP22.7■■□□□ 1.22
DDX41-213ENST00000512027 NHSQ6T4R5 1651 aa22.7■■□□□ 1.22
DDX41-213ENST00000512027 PSDA5PKW4 1024 aaPredicted RBP22.69■■□□□ 1.22
DDX41-213ENST00000512027 BCL9O00512 1426 aa22.68■■□□□ 1.22
DDX41-213ENST00000512027 SRCAPQ6ZRS2 3230 aa22.68■■□□□ 1.22
DDX41-213ENST00000512027 KIF24Q5T7B8 1368 aa22.68■■□□□ 1.22
DDX41-213ENST00000512027 ACSBG1Q96GR2 724 aa22.67■■□□□ 1.22
DDX41-213ENST00000512027 RGPD3A6NKT7 1758 aaPredicted RBP22.67■■□□□ 1.22
DDX41-213ENST00000512027 RGPD4Q7Z3J3 1758 aa22.67■■□□□ 1.22
DDX41-213ENST00000512027 KAT6BQ8WYB5 2073 aa22.66■■□□□ 1.22
DDX41-213ENST00000512027 KCNQ2O43526 872 aa22.66■■□□□ 1.22
DDX41-213ENST00000512027 POLKQ9UBT6 870 aa22.66■■□□□ 1.22
DDX41-213ENST00000512027 DDX54Q8TDD1 881 aaKnown RBP22.65■■□□□ 1.22
DDX41-213ENST00000512027 BCL11BQ9C0K0 894 aaPredicted RBP22.65■■□□□ 1.22
DDX41-213ENST00000512027 DOT1LQ8TEK3 1739 aa22.65■■□□□ 1.22
DDX41-213ENST00000512027 PARD3Q8TEW0 1356 aa22.64■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms