RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 WFS1O76024 890 aa12.24□□□□□ -0.45
NUP54-209ENST00000510569 SCARF1Q14162 830 aa12.24□□□□□ -0.45
NUP54-209ENST00000510569 CCDC116Q8IYX3 515 aa12.24□□□□□ -0.45
NUP54-209ENST00000510569 MEIOBQ8N635 442 aa12.24□□□□□ -0.45
NUP54-209ENST00000510569 TRIM34Q9BYJ4 488 aa12.24□□□□□ -0.45
NUP54-209ENST00000510569 TERTO14746 1132 aaKnown RBP12.23□□□□□ -0.45
NUP54-209ENST00000510569 ZBTB33Q86T24 672 aa12.23□□□□□ -0.45
NUP54-209ENST00000510569 EMILIN1Q9Y6C2 1016 aa12.23□□□□□ -0.45
NUP54-209ENST00000510569 PURBQ96QR8 312 aaKnown RBP12.22□□□□□ -0.45
NUP54-209ENST00000510569 ADAM32Q8TC27 787 aa12.21□□□□□ -0.45
NUP54-209ENST00000510569 KCTD15Q96SI1 283 aaPredicted RBP12.2□□□□□ -0.46
NUP54-209ENST00000510569 LCE2CQ5TA81 110 aa12.19□□□□□ -0.46
NUP54-209ENST00000510569 GJD4Q96KN9 370 aaPredicted RBP12.19□□□□□ -0.46
NUP54-209ENST00000510569 PPP1R26Q5T8A7 1209 aaPredicted RBP12.18□□□□□ -0.46
NUP54-209ENST00000510569 LINC00528Q8N1L1 170 aa12.18□□□□□ -0.46
NUP54-209ENST00000510569 SOCS7O14512 581 aa12.17□□□□□ -0.46
NUP54-209ENST00000510569 NPAS3Q8IXF0 933 aa12.17□□□□□ -0.46
NUP54-209ENST00000510569 NXF1Q9UBU9 619 aaKnown RBP12.17□□□□□ -0.46
NUP54-209ENST00000510569 NBPF20Q3BBV1 942 aa12.16□□□□□ -0.46
NUP54-209ENST00000510569 INTS6LQ5JSJ4 861 aaKnown RBP12.16□□□□□ -0.46
NUP54-209ENST00000510569 PGPEP1Q9NXJ5 209 aa12.16□□□□□ -0.46
NUP54-209ENST00000510569 DHX9Q08211 1270 aaKnown RBP12.15□□□□□ -0.46
NUP54-209ENST00000510569 BANK1Q8NDB2 785 aa12.15□□□□□ -0.46
NUP54-209ENST00000510569 WIPF1O43516 503 aa12.14□□□□□ -0.47
NUP54-209ENST00000510569 UPP2O95045 317 aa12.14□□□□□ -0.47
NUP54-209ENST00000510569 C6orf118Q5T5N4 469 aa12.14□□□□□ -0.47
NUP54-209ENST00000510569 Q6ZVU0 165 aa12.14□□□□□ -0.47
NUP54-209ENST00000510569 TSEN34Q9BSV6 310 aaKnown RBP12.14□□□□□ -0.47
NUP54-209ENST00000510569 BMP2P12643 396 aa12.12□□□□□ -0.47
NUP54-209ENST00000510569 H3BM21 787 aa12.11□□□□□ -0.47
NUP54-209ENST00000510569 DZIP3Q86Y13 1208 aaKnown RBP12.11□□□□□ -0.47
NUP54-209ENST00000510569 SOBPA7XYQ1 873 aa12.1□□□□□ -0.47
NUP54-209ENST00000510569 ZBBXA8MT70 800 aa12.1□□□□□ -0.47
NUP54-209ENST00000510569 ESPNB1AK53 854 aa12.1□□□□□ -0.47
NUP54-209ENST00000510569 SLC16A10Q8TF71 515 aa12.1□□□□□ -0.47
NUP54-209ENST00000510569 SOS2Q07890 1332 aaPredicted RBP12.1□□□□□ -0.47
NUP54-209ENST00000510569 GPR37L1O60883 481 aa12.09□□□□□ -0.47
NUP54-209ENST00000510569 CBLBQ13191 982 aa12.09□□□□□ -0.47
NUP54-209ENST00000510569 MTMR14Q8NCE2 650 aa12.09□□□□□ -0.47
NUP54-209ENST00000510569 MAN1A2O60476 641 aa12.07□□□□□ -0.48
NUP54-209ENST00000510569 FBXO45P0C2W1 286 aa12.07□□□□□ -0.48
NUP54-209ENST00000510569 SEPT12Q8IYM1 358 aa12.06□□□□□ -0.48
NUP54-209ENST00000510569 DNMT3LQ9UJW3 386 aa12.06□□□□□ -0.48
NUP54-209ENST00000510569 SPINT1O43278 529 aa12.05□□□□□ -0.48
NUP54-209ENST00000510569 IRF7Q92985 503 aa12.05□□□□□ -0.48
NUP54-209ENST00000510569 VEGFBP49765 207 aa12.04□□□□□ -0.48
NUP54-209ENST00000510569 ZNF784Q8NCA9 323 aaPredicted RBP12.04□□□□□ -0.48
NUP54-209ENST00000510569 NDUFB9Q9Y6M9 179 aa12.04□□□□□ -0.48
NUP54-209ENST00000510569 ERVH48-1M5A8F1 160 aa12.03□□□□□ -0.48
NUP54-209ENST00000510569 APBB1O00213 710 aa12.03□□□□□ -0.48
NUP54-209ENST00000510569 SNRKQ9NRH2 765 aa12.03□□□□□ -0.48
NUP54-209ENST00000510569 TMPRSS4Q9NRS4 437 aa12.03□□□□□ -0.48
NUP54-209ENST00000510569 TTLL8A6PVC2 850 aa12.02□□□□□ -0.49
NUP54-209ENST00000510569 LILRA1O75019 489 aa12.02□□□□□ -0.49
NUP54-209ENST00000510569 VSIG8P0DPA2 414 aa12.02□□□□□ -0.49
NUP54-209ENST00000510569 NR1H3Q13133 447 aa12.02□□□□□ -0.49
NUP54-209ENST00000510569 ERBB4Q15303 1308 aa12.02□□□□□ -0.49
NUP54-209ENST00000510569 RAB15P59190 212 aa12.01□□□□□ -0.49
NUP54-209ENST00000510569 PCDHB9Q9Y5E1 797 aa12.01□□□□□ -0.49
NUP54-209ENST00000510569 INSM1Q01101 510 aaPredicted RBP12□□□□□ -0.49
NUP54-209ENST00000510569 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12□□□□□ -0.49
NUP54-209ENST00000510569 AGBL1Q96MI9 1066 aa12□□□□□ -0.49
NUP54-209ENST00000510569 ADH1AP07327 375 aa11.99□□□□□ -0.49
NUP54-209ENST00000510569 GMPRP36959 345 aa11.99□□□□□ -0.49
NUP54-209ENST00000510569 MCCD1P59942 119 aaPredicted RBP11.98□□□□□ -0.49
NUP54-209ENST00000510569 CCDC125Q86Z20 511 aa11.98□□□□□ -0.49
NUP54-209ENST00000510569 GIGYF1O75420 1035 aaPredicted RBP11.97□□□□□ -0.49
NUP54-209ENST00000510569 PRKCSHP14314 528 aaPredicted RBP11.97□□□□□ -0.49
NUP54-209ENST00000510569 RELBQ01201 579 aa11.97□□□□□ -0.49
NUP54-209ENST00000510569 KDF1Q8NAX2 398 aaPredicted RBP11.97□□□□□ -0.49
NUP54-209ENST00000510569 ZNF592Q92610 1267 aa11.97□□□□□ -0.49
NUP54-209ENST00000510569 PPFIA3O75145 1194 aa11.96□□□□□ -0.49
NUP54-209ENST00000510569 ADD1P35611 737 aaKnown RBP11.96□□□□□ -0.49
NUP54-209ENST00000510569 TRIM52Q96A61 297 aa11.96□□□□□ -0.49
NUP54-209ENST00000510569 CTSOP43234 321 aaPredicted RBP11.95□□□□□ -0.5
NUP54-209ENST00000510569 ZNF330Q9Y3S2 320 aaPredicted RBP11.95□□□□□ -0.5
NUP54-209ENST00000510569 INSM2Q96T92 566 aaPredicted RBP11.94□□□□□ -0.5
NUP54-209ENST00000510569 STK17AQ9UEE5 414 aa11.94□□□□□ -0.5
NUP54-209ENST00000510569 PTGIRP43119 386 aa11.93□□□□□ -0.5
NUP54-209ENST00000510569 CYLDQ9NQC7 956 aa11.93□□□□□ -0.5
NUP54-209ENST00000510569 FIGNL2A6NMB9 653 aa11.92□□□□□ -0.5
NUP54-209ENST00000510569 PTSQ03393 145 aa11.92□□□□□ -0.5
NUP54-209ENST00000510569 RNF20Q5VTR2 975 aa11.92□□□□□ -0.5
NUP54-209ENST00000510569 RNF217Q8TC41 542 aa11.92□□□□□ -0.5
NUP54-209ENST00000510569 ZNF395Q9H8N7 513 aaPredicted RBP11.92□□□□□ -0.5
NUP54-209ENST00000510569 ERVK-9P63128 1117 aa11.91□□□□□ -0.5
NUP54-209ENST00000510569 TBC1D2BQ9UPU7 963 aa11.91□□□□□ -0.5
NUP54-209ENST00000510569 LORP23490 312 aaPredicted RBP11.9□□□□□ -0.5
NUP54-209ENST00000510569 FOXD4L5Q5VV16 416 aaPredicted RBP11.9□□□□□ -0.5
NUP54-209ENST00000510569 POLMQ9NP87 494 aaPredicted RBP11.9□□□□□ -0.5
NUP54-209ENST00000510569 SLC35F4A4IF30 521 aa11.87□□□□□ -0.51
NUP54-209ENST00000510569 CC2D2BQ6DHV5 1058 aa11.87□□□□□ -0.51
NUP54-209ENST00000510569 CCDC155Q8N6L0 562 aa11.87□□□□□ -0.51
NUP54-209ENST00000510569 ATP5J2-PTCD1G3V325 749 aa11.86□□□□□ -0.51
NUP54-209ENST00000510569 IRF5Q13568 498 aa11.86□□□□□ -0.51
NUP54-209ENST00000510569 PRM3Q9NNZ6 103 aa11.86□□□□□ -0.51
NUP54-209ENST00000510569 SCTRP47872 440 aa11.84□□□□□ -0.51
NUP54-209ENST00000510569 NANOS1Q8WY41 292 aaKnown RBP11.84□□□□□ -0.51
NUP54-209ENST00000510569 SENP3-EIF4A1A0A087X0R7 540 aa11.83□□□□□ -0.52
NUP54-209ENST00000510569 RNF144AP50876 292 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms