RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CCDC146Q8IYE0 955 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 CLASRPQ8N2M8 674 aaKnown RBP4.27□□□□□ -1.73
USP53-205ENST00000509769 PPFIBP2Q8ND30 876 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.27□□□□□ -1.73
USP53-205ENST00000509769 R3HCC1Q9Y3T6 440 aaKnown RBP4.27□□□□□ -1.73
USP53-205ENST00000509769 EIF3DO15371 548 aaKnown RBP eCLIP4.26□□□□□ -1.73
USP53-205ENST00000509769 PPFIA3O75145 1194 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 NASPP49321 788 aaPredicted RBP4.26□□□□□ -1.73
USP53-205ENST00000509769 CCDC6Q16204 474 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 RSRC1Q96IZ7 334 aaKnown RBP4.26□□□□□ -1.73
USP53-205ENST00000509769 RABEP2Q9H5N1 569 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 A0A1B0GUL7 405 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 ZFYP08048 801 aaPredicted RBP4.26□□□□□ -1.73
USP53-205ENST00000509769 KCNJ4P48050 445 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 RBM6P78332 1123 aaKnown RBP4.26□□□□□ -1.73
USP53-205ENST00000509769 HDAC1Q13547 482 aaPredicted RBP4.26□□□□□ -1.73
USP53-205ENST00000509769 A2ML1A8K2U0 1454 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 NCKAP5LQ9HCH0 1330 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 LRP5O75197 1615 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 STAMBPO95630 424 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 BMS1Q14692 1282 aaKnown RBP4.26□□□□□ -1.73
USP53-205ENST00000509769 C6orf163Q5TEZ5 329 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 GBP7Q8N8V2 638 aaPredicted RBP4.26□□□□□ -1.73
USP53-205ENST00000509769 GPATCH3Q96I76 525 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 BRMS1Q9HCU9 246 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 GABPB1Q06547 395 aaPredicted RBP4.26□□□□□ -1.73
USP53-205ENST00000509769 HS1BP3Q53T59 392 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 ZNF518AQ6AHZ1 1483 aa4.26□□□□□ -1.73
USP53-205ENST00000509769 KIF1CO43896 1103 aaKnown RBP4.25□□□□□ -1.73
USP53-205ENST00000509769 PSMD7P51665 324 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 AP1ARQ63HQ0 302 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 SPECC1LQ69YQ0 1117 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 TMCO3Q6UWJ1 677 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 CCDC65Q8IXS2 484 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 GPATCH11Q8N954 259 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 UIMC1Q96RL1 719 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 ZNF142P52746 1687 aaPredicted RBP4.25□□□□□ -1.73
USP53-205ENST00000509769 CBFA2T2O43439 604 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 PPP1R12BO60237 982 aaPredicted RBP4.25□□□□□ -1.73
USP53-205ENST00000509769 TXLNAP40222 546 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 MFAP1P55081 439 aaKnown RBP4.25□□□□□ -1.73
USP53-205ENST00000509769 SMC4Q9NTJ3 1288 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 UQCRHLA0A096LP55 91 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 ESPNB1AK53 854 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 UQCRHP07919 91 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 RBBP5Q15291 538 aaKnown RBP4.25□□□□□ -1.73
USP53-205ENST00000509769 HOOK3Q86VS8 718 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 POTEDQ86YR6 584 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 ITPRIPQ8IWB1 547 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 FMNL2Q96PY5 1086 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 ARID4AP29374 1257 aaPredicted RBP4.25□□□□□ -1.73
USP53-205ENST00000509769 TTC31Q49AM3 519 aaPredicted RBP4.25□□□□□ -1.73
USP53-205ENST00000509769 ERC1Q8IUD2 1116 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 RASSF4Q9H2L5 321 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 RAPGEF6Q8TEU7 1601 aa4.25□□□□□ -1.73
USP53-205ENST00000509769 LOC105371045A0A1W2PR82 267 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 TACC1O75410 805 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 POTEAQ6S8J7 498 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 CCDC83Q8IWF9 413 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 EFCC1Q9HA90 598 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 SUPT6HQ7KZ85 1726 aaKnown RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 KIF5BP33176 963 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 CEP135Q66GS9 1140 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 SPATS2Q86XZ4 545 aaKnown RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 PDILTQ8N807 584 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.24□□□□□ -1.73
USP53-205ENST00000509769 RTF1Q92541 710 aaKnown RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 SMARCC1Q92922 1105 aaPredicted RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 IFT57Q9NWB7 429 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 NPHP4O75161 1426 aaPredicted RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 CENPJQ9HC77 1338 aaPredicted RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 GOLGA2Q08379 1002 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 AIMP1Q12904 312 aaKnown RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 TPD52L1Q16890 204 aaPredicted RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 LRRFIP1Q32MZ4 808 aaKnown RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 C10orf67Q8IYJ2 551 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 CWC22Q9HCG8 908 aaKnown RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 TERF2IPQ9NYB0 399 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 DACH1Q9UI36 760 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 ZHX1Q9UKY1 873 aaPredicted RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 CEP83Q9Y592 693 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 LRRC7Q96NW7 1537 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 PPP1R15AO75807 674 aaPredicted RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 ZRANB2O95218 330 aaKnown RBP eCLIP4.24□□□□□ -1.73
USP53-205ENST00000509769 CAVIN2O95810 425 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 ERCC3P19447 782 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 RBM10P98175 930 aaKnown RBP4.24□□□□□ -1.73
USP53-205ENST00000509769 CCDC40Q4G0X9 1142 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 CCDC102AQ96A19 550 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 TRIM35Q9UPQ4 493 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 PAXBP1Q9Y5B6 917 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 EID1Q9Y6B2 187 aa4.24□□□□□ -1.73
USP53-205ENST00000509769 CLIP1P30622 1438 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 LRCH2Q5VUJ6 765 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 KRT222Q8N1A0 295 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 SRRTQ9BXP5 876 aaKnown RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 LRRCC1Q9C099 1032 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 LUC7L2Q9Y383 392 aaKnown RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 CGNL1Q0VF96 1302 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 BUB1BO60566 1050 aaPredicted RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms