RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SLC12A5Q9H2X9 1139 aa13.89□□□□□ -0.19
NUP54-203ENST00000504173 POLR3AO14802 1390 aaPredicted RBP13.88□□□□□ -0.19
NUP54-203ENST00000504173 PLSCR1O15162 318 aa13.88□□□□□ -0.19
NUP54-203ENST00000504173 CCDC7Q96M83 1385 aa13.87□□□□□ -0.19
NUP54-203ENST00000504173 HDGFL2Q7Z4V5 671 aaPredicted RBP13.87□□□□□ -0.19
NUP54-203ENST00000504173 TERF2IPQ9NYB0 399 aa13.87□□□□□ -0.19
NUP54-203ENST00000504173 BARGINQ6ZT62 677 aa13.86□□□□□ -0.19
NUP54-203ENST00000504173 WASHC2AQ641Q2 1341 aa13.86□□□□□ -0.19
NUP54-203ENST00000504173 PLEKHG5O94827 1062 aa13.85□□□□□ -0.19
NUP54-203ENST00000504173 PDE3BQ13370 1112 aa13.85□□□□□ -0.19
NUP54-203ENST00000504173 LMOD2Q6P5Q4 547 aa13.85□□□□□ -0.19
NUP54-203ENST00000504173 ZNF692Q9BU19 519 aaPredicted RBP13.85□□□□□ -0.19
NUP54-203ENST00000504173 ATF5Q9Y2D1 282 aaPredicted RBP13.85□□□□□ -0.19
NUP54-203ENST00000504173 AKAP12Q02952 1782 aa13.85□□□□□ -0.19
NUP54-203ENST00000504173 CD163L1Q9NR16 1453 aa13.85□□□□□ -0.19
NUP54-203ENST00000504173 A0A1W2PP64 1363 aa13.84□□□□□ -0.19
NUP54-203ENST00000504173 KTN1Q86UP2 1357 aaKnown RBP13.84□□□□□ -0.19
NUP54-203ENST00000504173 ANKRD36BQ8N2N9 1353 aa13.84□□□□□ -0.19
NUP54-203ENST00000504173 USP6P35125 1406 aa13.84□□□□□ -0.19
NUP54-203ENST00000504173 CPSF1Q10570 1443 aaKnown RBP13.84□□□□□ -0.19
NUP54-203ENST00000504173 MTFR1LQ9H019 292 aa13.84□□□□□ -0.19
NUP54-203ENST00000504173 PAK3O75914 559 aaPredicted RBP13.83□□□□□ -0.2
NUP54-203ENST00000504173 GPR162Q16538 588 aa13.83□□□□□ -0.2
NUP54-203ENST00000504173 GOLGB1Q14789 3259 aaKnown RBP13.82□□□□□ -0.2
NUP54-203ENST00000504173 MON2Q7Z3U7 1717 aa13.82□□□□□ -0.2
NUP54-203ENST00000504173 TRPM3Q9HCF6 1732 aaPredicted RBP13.82□□□□□ -0.2
NUP54-203ENST00000504173 BRD4O60885 1362 aaPredicted RBP13.82□□□□□ -0.2
NUP54-203ENST00000504173 PRELPP51888 382 aa13.81□□□□□ -0.2
NUP54-203ENST00000504173 ARXQ96QS3 562 aa13.81□□□□□ -0.2
NUP54-203ENST00000504173 EDC4Q6P2E9 1401 aaKnown RBP13.81□□□□□ -0.2
NUP54-203ENST00000504173 ALS2Q96Q42 1657 aa13.8□□□□□ -0.2
NUP54-203ENST00000504173 ZNF316A6NFI3 1004 aaPredicted RBP13.8□□□□□ -0.2
NUP54-203ENST00000504173 PANK3Q9H999 370 aa13.8□□□□□ -0.2
NUP54-203ENST00000504173 PRDM11Q9NQV5 511 aa13.8□□□□□ -0.2
NUP54-203ENST00000504173 CRYBG1Q9Y4K1 1723 aa13.8□□□□□ -0.2
NUP54-203ENST00000504173 TTC21BQ7Z4L5 1316 aa13.8□□□□□ -0.2
NUP54-203ENST00000504173 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.79□□□□□ -0.22e-11■■□□□ 11.8
NUP54-203ENST00000504173 BCL11BQ9C0K0 894 aaPredicted RBP13.79□□□□□ -0.2
NUP54-203ENST00000504173 SSH2Q76I76 1423 aa13.79□□□□□ -0.2
NUP54-203ENST00000504173 PROM2Q8N271 834 aa13.78□□□□□ -0.2
NUP54-203ENST00000504173 ABTB2Q8N961 1025 aa13.78□□□□□ -0.2
NUP54-203ENST00000504173 PCDH10Q9P2E7 1040 aa13.78□□□□□ -0.2
NUP54-203ENST00000504173 TTC21AQ8NDW8 1320 aa13.78□□□□□ -0.2
NUP54-203ENST00000504173 NSD3Q9BZ95 1437 aa13.78□□□□□ -0.2
NUP54-203ENST00000504173 PEAK1Q9H792 1746 aa13.78□□□□□ -0.2
NUP54-203ENST00000504173 OVOS2A0A0G2JMS6 1433 aa13.77□□□□□ -0.21
NUP54-203ENST00000504173 OVOS2A0A0J9YW53 1432 aa13.77□□□□□ -0.21
NUP54-203ENST00000504173 SLC15A2Q16348 729 aa13.77□□□□□ -0.21
NUP54-203ENST00000504173 OVOS2Q6IE36 1432 aa13.77□□□□□ -0.21
NUP54-203ENST00000504173 ATP10DQ9P241 1426 aa13.77□□□□□ -0.21
NUP54-203ENST00000504173 COL13A1Q5TAT6 717 aaPredicted RBP13.76□□□□□ -0.21
NUP54-203ENST00000504173 NUTM2GQ5VZR2 741 aa13.76□□□□□ -0.21
NUP54-203ENST00000504173 CARD14Q9BXL6 1004 aa13.76□□□□□ -0.21
NUP54-203ENST00000504173 STK32BQ9NY57 414 aa13.76□□□□□ -0.21
NUP54-203ENST00000504173 CAPN15O75808 1086 aa13.75□□□□□ -0.21
NUP54-203ENST00000504173 NME9Q86XW9 330 aa13.75□□□□□ -0.21
NUP54-203ENST00000504173 TCP11L2Q8N4U5 519 aa13.75□□□□□ -0.21
NUP54-203ENST00000504173 PARP4Q9UKK3 1724 aaKnown RBP13.75□□□□□ -0.21
NUP54-203ENST00000504173 PIK3C2AO00443 1686 aa13.75□□□□□ -0.21
NUP54-203ENST00000504173 KIAA0232Q92628 1395 aa13.74□□□□□ -0.21
NUP54-203ENST00000504173 CGNL1Q0VF96 1302 aa13.74□□□□□ -0.21
NUP54-203ENST00000504173 NLRP6P59044 892 aa13.74□□□□□ -0.21
NUP54-203ENST00000504173 DNAJC5GQ8N7S2 189 aa13.74□□□□□ -0.21
NUP54-203ENST00000504173 GPBP1L1Q9HC44 474 aaPredicted RBP13.74□□□□□ -0.21
NUP54-203ENST00000504173 STRN4Q9NRL3 753 aa13.74□□□□□ -0.21
NUP54-203ENST00000504173 THRAP3Q9Y2W1 955 aaKnown RBP13.74□□□□□ -0.21
NUP54-203ENST00000504173 KNSTRNQ9Y448 316 aa13.74□□□□□ -0.21
NUP54-203ENST00000504173 APLP1P51693 650 aa13.73□□□□□ -0.21
NUP54-203ENST00000504173 DDX10Q13206 875 aaKnown RBP13.73□□□□□ -0.21
NUP54-203ENST00000504173 NLRP13Q86W25 1043 aa13.73□□□□□ -0.21
NUP54-203ENST00000504173 USP35Q9P2H5 1018 aa13.73□□□□□ -0.21
NUP54-203ENST00000504173 AATKQ6ZMQ8 1374 aa13.72□□□□□ -0.21
NUP54-203ENST00000504173 SBF2Q86WG5 1849 aa13.72□□□□□ -0.21
NUP54-203ENST00000504173 KIF20BQ96Q89 1820 aa13.72□□□□□ -0.21
NUP54-203ENST00000504173 GRIN3BO60391 1043 aa13.72□□□□□ -0.21
NUP54-203ENST00000504173 BCL9O00512 1426 aa13.72□□□□□ -0.21
NUP54-203ENST00000504173 ADCY9O60503 1353 aa13.71□□□□□ -0.21
NUP54-203ENST00000504173 USP31Q70CQ4 1352 aa13.71□□□□□ -0.21
NUP54-203ENST00000504173 FYB1O15117 783 aa13.71□□□□□ -0.21
NUP54-203ENST00000504173 COG3Q96JB2 828 aa13.71□□□□□ -0.21
NUP54-203ENST00000504173 GGNBP2Q9H3C7 697 aa13.71□□□□□ -0.21
NUP54-203ENST00000504173 USP19O94966 1318 aa13.7□□□□□ -0.22
NUP54-203ENST00000504173 CHRNA2Q15822 529 aa13.7□□□□□ -0.22
NUP54-203ENST00000504173 TXNRD1Q16881 649 aa13.7□□□□□ -0.22
NUP54-203ENST00000504173 TNS4Q8IZW8 715 aa13.7□□□□□ -0.22
NUP54-203ENST00000504173 PHRF1Q9P1Y6 1649 aaKnown RBP13.69□□□□□ -0.22
NUP54-203ENST00000504173 PER1O15534 1290 aaPredicted RBP13.69□□□□□ -0.22
NUP54-203ENST00000504173 PTF1AQ7RTS3 328 aa13.69□□□□□ -0.22
NUP54-203ENST00000504173 NSD2O96028 1365 aa13.69□□□□□ -0.22
NUP54-203ENST00000504173 USP54Q70EL1 1684 aa13.69□□□□□ -0.22
NUP54-203ENST00000504173 SOX12O15370 315 aa13.68□□□□□ -0.22
NUP54-203ENST00000504173 LARP1Q6PKG0 1096 aaKnown RBP13.68□□□□□ -0.22
NUP54-203ENST00000504173 SLIT3O75094 1523 aa13.68□□□□□ -0.22
NUP54-203ENST00000504173 GCP02774 474 aa13.67□□□□□ -0.22
NUP54-203ENST00000504173 EVA1CP58658 441 aa13.67□□□□□ -0.22
NUP54-203ENST00000504173 AMER1Q5JTC6 1135 aaPredicted RBP13.67□□□□□ -0.22
NUP54-203ENST00000504173 PELP1Q8IZL8 1130 aaKnown RBP13.67□□□□□ -0.22
NUP54-203ENST00000504173 YBX3P16989 372 aaKnown RBP eCLIP13.66□□□□□ -0.221e-9■■■■■ 32.2
NUP54-203ENST00000504173 CNGB1Q14028 1251 aaPredicted RBP13.66□□□□□ -0.22
NUP54-203ENST00000504173 CC2D1BQ5T0F9 858 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms