RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 CPSF1Q10570 1443 aaKnown RBP21.26■□□□□ 0.99
TRAF4-212ENST00000498540 ANO8Q9HCE9 1232 aaPredicted RBP21.25■□□□□ 0.99
TRAF4-212ENST00000498540 PPP1R1BQ9UD71 204 aaPredicted RBP21.25■□□□□ 0.99
TRAF4-212ENST00000498540 AXIN2Q9Y2T1 843 aa21.25■□□□□ 0.99
TRAF4-212ENST00000498540 TRPM1Q7Z4N2 1603 aa21.25■□□□□ 0.99
TRAF4-212ENST00000498540 PLSCR1O15162 318 aa21.24■□□□□ 0.99
TRAF4-212ENST00000498540 YY1P25490 414 aa21.24■□□□□ 0.99
TRAF4-212ENST00000498540 WDR17Q8IZU2 1322 aa21.24■□□□□ 0.99
TRAF4-212ENST00000498540 NINLQ9Y2I6 1382 aa21.23■□□□□ 0.99
TRAF4-212ENST00000498540 MARCH10Q8NA82 808 aaPredicted RBP21.22■□□□□ 0.99
TRAF4-212ENST00000498540 BCL11BQ9C0K0 894 aaPredicted RBP21.21■□□□□ 0.99
TRAF4-212ENST00000498540 EVC2Q86UK5 1308 aa21.21■□□□□ 0.99
TRAF4-212ENST00000498540 ARHGEF25Q86VW2 580 aa21.2■□□□□ 0.98
TRAF4-212ENST00000498540 PDGFDQ9GZP0 370 aaPredicted RBP21.2■□□□□ 0.98
TRAF4-212ENST00000498540 BCL9O00512 1426 aa21.2■□□□□ 0.98
TRAF4-212ENST00000498540 NFAT5O94916 1531 aa21.19■□□□□ 0.98
TRAF4-212ENST00000498540 PROM2Q8N271 834 aa21.19■□□□□ 0.98
TRAF4-212ENST00000498540 TTC21BQ7Z4L5 1316 aa21.19■□□□□ 0.98
TRAF4-212ENST00000498540 SOX12O15370 315 aa21.18■□□□□ 0.98
TRAF4-212ENST00000498540 L3MBTL2Q969R5 705 aa21.18■□□□□ 0.98
TRAF4-212ENST00000498540 MYOM1P52179 1685 aa21.18■□□□□ 0.98
TRAF4-212ENST00000498540 CDCA7Q9BWT1 371 aaPredicted RBP21.17■□□□□ 0.98
TRAF4-212ENST00000498540 CARD10Q9BWT7 1032 aa21.16■□□□□ 0.98
TRAF4-212ENST00000498540 CSB-PGBD3P0DP91 1061 aa21.15■□□□□ 0.98
TRAF4-212ENST00000498540 KCNH5Q8NCM2 988 aa21.15■□□□□ 0.98
TRAF4-212ENST00000498540 MON2Q7Z3U7 1717 aa21.15■□□□□ 0.98
TRAF4-212ENST00000498540 TTC21AQ8NDW8 1320 aa21.14■□□□□ 0.97
TRAF4-212ENST00000498540 ZBTB7AO95365 584 aa21.14■□□□□ 0.97
TRAF4-212ENST00000498540 ZNF692Q9BU19 519 aaPredicted RBP21.14■□□□□ 0.97
TRAF4-212ENST00000498540 ABCC6O95255 1503 aa21.14■□□□□ 0.97
TRAF4-212ENST00000498540 TNS2Q63HR2 1409 aa21.12■□□□□ 0.97
TRAF4-212ENST00000498540 ROCK2O75116 1388 aaKnown RBP21.12■□□□□ 0.97
TRAF4-212ENST00000498540 NHSQ6T4R5 1651 aa21.12■□□□□ 0.97
TRAF4-212ENST00000498540 DCAF8L1A6NGE4 600 aa21.12■□□□□ 0.97
TRAF4-212ENST00000498540 KTN1Q86UP2 1357 aaKnown RBP21.11■□□□□ 0.97
TRAF4-212ENST00000498540 PTGER2P43116 358 aa21.11■□□□□ 0.97
TRAF4-212ENST00000498540 TXNRD1Q16881 649 aa21.11■□□□□ 0.97
TRAF4-212ENST00000498540 USP54Q70EL1 1684 aa21.11■□□□□ 0.97
TRAF4-212ENST00000498540 CCDC7Q96M83 1385 aa21.1■□□□□ 0.97
TRAF4-212ENST00000498540 SIN3AQ96ST3 1273 aa21.1■□□□□ 0.97
TRAF4-212ENST00000498540 LTN1O94822 1766 aa21.1■□□□□ 0.97
TRAF4-212ENST00000498540 EXOC5O00471 708 aa21.09■□□□□ 0.97
TRAF4-212ENST00000498540 STK32BQ9NY57 414 aa21.08■□□□□ 0.97
TRAF4-212ENST00000498540 ATF5Q9Y2D1 282 aaPredicted RBP21.08■□□□□ 0.97
TRAF4-212ENST00000498540 SLC15A2Q16348 729 aa21.07■□□□□ 0.96
TRAF4-212ENST00000498540 PAPPAQ13219 1627 aa21.07■□□□□ 0.96
TRAF4-212ENST00000498540 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.05■□□□□ 0.96
TRAF4-212ENST00000498540 BTAF1O14981 1849 aa21.05■□□□□ 0.96
TRAF4-212ENST00000498540 USP31Q70CQ4 1352 aa21.05■□□□□ 0.96
TRAF4-212ENST00000498540 CD163L1Q9NR16 1453 aa21.05■□□□□ 0.96
TRAF4-212ENST00000498540 ERBB3P21860 1342 aa21.04■□□□□ 0.96
TRAF4-212ENST00000498540 ACSBG1Q96GR2 724 aa21.04■□□□□ 0.96
TRAF4-212ENST00000498540 NEUROD1Q13562 356 aa21.03■□□□□ 0.96
TRAF4-212ENST00000498540 NME9Q86XW9 330 aa21.03■□□□□ 0.96
TRAF4-212ENST00000498540 SBNO2Q9Y2G9 1366 aa21.02■□□□□ 0.96
TRAF4-212ENST00000498540 FHDC1Q9C0D6 1143 aaPredicted RBP21.02■□□□□ 0.96
TRAF4-212ENST00000498540 NLRP2Q9NX02 1062 aa21.02■□□□□ 0.96
TRAF4-212ENST00000498540 SGIP1Q9BQI5 828 aa21.01■□□□□ 0.95
TRAF4-212ENST00000498540 MTFR1LQ9H019 292 aa21.01■□□□□ 0.95
TRAF4-212ENST00000498540 SYT17Q9BSW7 474 aa21■□□□□ 0.95
TRAF4-212ENST00000498540 IL2RBP14784 551 aa20.99■□□□□ 0.95
TRAF4-212ENST00000498540 KAT6BQ8WYB5 2073 aa20.98■□□□□ 0.95
TRAF4-212ENST00000498540 UTRNP46939 3433 aa20.98■□□□□ 0.95
TRAF4-212ENST00000498540 ANKRD24Q8TF21 1146 aa20.97■□□□□ 0.95
TRAF4-212ENST00000498540 CHD4Q14839 1912 aa20.97■□□□□ 0.95
TRAF4-212ENST00000498540 ZNF827Q17R98 1081 aa20.96■□□□□ 0.95
TRAF4-212ENST00000498540 ZNF784Q8NCA9 323 aaPredicted RBP20.96■□□□□ 0.95
TRAF4-212ENST00000498540 EDC4Q6P2E9 1401 aaKnown RBP20.95■□□□□ 0.95
TRAF4-212ENST00000498540 TMC1Q8TDI8 760 aa20.95■□□□□ 0.94
TRAF4-212ENST00000498540 SLC12A5Q9H2X9 1139 aa20.94■□□□□ 0.94
TRAF4-212ENST00000498540 LRRC4BQ9NT99 713 aa20.94■□□□□ 0.94
TRAF4-212ENST00000498540 FAM208AQ9UK61 1670 aaKnown RBP20.93■□□□□ 0.94
TRAF4-212ENST00000498540 QSER1Q2KHR3 1735 aa20.93■□□□□ 0.94
TRAF4-212ENST00000498540 HDGFL2Q7Z4V5 671 aaPredicted RBP20.93■□□□□ 0.94
TRAF4-212ENST00000498540 ARXQ96QS3 562 aa20.93■□□□□ 0.94
TRAF4-212ENST00000498540 A0A1W2PP64 1363 aa20.93■□□□□ 0.94
TRAF4-212ENST00000498540 CARD11Q9BXL7 1154 aa20.92■□□□□ 0.94
TRAF4-212ENST00000498540 TUBGCP6Q96RT7 1819 aa20.92■□□□□ 0.94
TRAF4-212ENST00000498540 MAP3K5Q99683 1374 aa20.91■□□□□ 0.94
TRAF4-212ENST00000498540 DOT1LQ8TEK3 1739 aa20.9■□□□□ 0.94
TRAF4-212ENST00000498540 COL24A1Q17RW2 1714 aa20.89■□□□□ 0.93
TRAF4-212ENST00000498540 SHANK3Q9BYB0 1731 aa20.89■□□□□ 0.93
TRAF4-212ENST00000498540 RGPD2P0DJD1 1756 aa20.88■□□□□ 0.93
TRAF4-212ENST00000498540 AKT1S1Q96B36 256 aa20.88■□□□□ 0.93
TRAF4-212ENST00000498540 DDX54Q8TDD1 881 aaKnown RBP20.87■□□□□ 0.93
TRAF4-212ENST00000498540 IP6K1Q92551 441 aa20.87■□□□□ 0.93
TRAF4-212ENST00000498540 LTV1Q96GA3 475 aaPredicted RBP20.87■□□□□ 0.93
TRAF4-212ENST00000498540 TERF2IPQ9NYB0 399 aa20.87■□□□□ 0.93
TRAF4-212ENST00000498540 LY75O60449 1722 aa20.86■□□□□ 0.93
TRAF4-212ENST00000498540 PNPLA7Q6ZV29 1317 aa20.84■□□□□ 0.93
TRAF4-212ENST00000498540 KCNQ4P56696 695 aa20.84■□□□□ 0.93
TRAF4-212ENST00000498540 SLC27A3Q5K4L6 730 aa20.84■□□□□ 0.93
TRAF4-212ENST00000498540 NSD2O96028 1365 aa20.83■□□□□ 0.92
TRAF4-212ENST00000498540 MAP3K19Q56UN5 1328 aa20.82■□□□□ 0.92
TRAF4-212ENST00000498540 KLHL34Q8N239 644 aa20.82■□□□□ 0.92
TRAF4-212ENST00000498540 SLC16A10Q8TF71 515 aa20.82■□□□□ 0.92
TRAF4-212ENST00000498540 SYTL4Q96C24 671 aaPredicted RBP20.82■□□□□ 0.92
TRAF4-212ENST00000498540 MEGF6O75095 1541 aa20.82■□□□□ 0.92
TRAF4-212ENST00000498540 ANKRD36BQ8N2N9 1353 aa20.82■□□□□ 0.92
TRAF4-212ENST00000498540 FBLN1P23142 703 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms