RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.43■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 DIP2AQ14689 1571 aa20.43■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 LRRC7Q96NW7 1537 aa20.43■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 DLC1Q96QB1 1528 aa20.42■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 XRN1Q8IZH2 1706 aaKnown RBP20.42■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 PROSER2Q86WR7 435 aaPredicted RBP20.42■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 DDX19BQ9UMR2 479 aa20.42■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 BECN1Q14457 450 aa20.42■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 FCHSD2O94868 740 aa20.41■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 PNNQ9H307 717 aaKnown RBP20.41■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 FAM135BQ49AJ0 1406 aa20.4■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 ITPRIPQ8IWB1 547 aa20.4■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 TMEM57Q8N5G2 664 aa20.4■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 POLKQ9UBT6 870 aa20.4■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 MAP2P11137 1827 aaKnown RBP20.4■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 FBLN1P23142 703 aa20.39■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 RSPH6AQ9H0K4 717 aa20.39■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 ATP7BP35670 1465 aa20.39■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 CPS1P31327 1500 aa20.39■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 ANTXR1Q9H6X2 564 aa20.38■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 UPF2Q9HAU5 1272 aaKnown RBP20.38■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 ZBTB40Q9NUA8 1239 aa20.38■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 KNDC1Q76NI1 1749 aa20.38■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 SMC5Q8IY18 1101 aa20.38■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.37■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 PRKAR2BP31323 418 aa20.37■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 ALDH1L2Q3SY69 923 aa20.37■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 TMEM94Q12767 1356 aa20.36■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 TECPR2O15040 1411 aa20.36■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 PKNOX2Q96KN3 472 aa20.36■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 TBC1D2Q9BYX2 928 aa20.36■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 KIF16BQ96L93 1317 aa20.36■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 NALCNQ8IZF0 1738 aa20.36■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 PPIP5K1Q6PFW1 1433 aa20.35■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 SLKQ9H2G2 1235 aaPredicted RBP20.34■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 RGPD8O14715 1765 aaPredicted RBP20.34■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 IPO8O15397 1037 aaKnown RBP20.34■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 PHACTR3Q96KR7 559 aa20.34■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 PIK3R4Q99570 1358 aa20.34■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 BRPF1P55201 1214 aaPredicted RBP20.33■□□□□ 0.85
MSH5-SAPCD1-208ENST00000498473 CPSF1Q10570 1443 aaKnown RBP20.33■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 PTCH1Q13635 1447 aa20.32■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 XIRP1Q702N8 1843 aaKnown RBP20.32■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.32■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 NFE2L2Q16236 605 aa20.31■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 BRPF3Q9ULD4 1205 aa20.31■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 NWD1Q149M9 1564 aa20.3■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 PRR36Q9H6K5 1346 aa20.3■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 WASLO00401 505 aaPredicted RBP20.3■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 HMOX1P09601 288 aa20.3■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 IL13P35225 146 aa20.3■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 ZNF428Q96B54 188 aa20.3■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 EMILIN1Q9Y6C2 1016 aa20.3■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 EDC4Q6P2E9 1401 aaKnown RBP20.29■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 C22orf23Q9BZE7 217 aa20.29■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 VAMP4O75379 141 aa20.29■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 NUCB1Q02818 461 aa20.29■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 THUMPD2Q9BTF0 503 aaKnown RBP20.29■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 CDK12Q9NYV4 1490 aaPredicted RBP20.27■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 MFAP1P55081 439 aaKnown RBP20.27■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 NME9Q86XW9 330 aa20.27■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 MRPL50Q8N5N7 158 aaKnown RBP20.27■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 ZRANB1Q9UGI0 708 aa20.27■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 DLG5Q8TDM6 1919 aa20.27■□□□□ 0.84
MSH5-SAPCD1-208ENST00000498473 ZNF853P0CG23 659 aa20.26■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 TSPYL6Q8N831 410 aa20.26■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 DDX17Q92841 729 aaKnown RBP20.26■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 AATKQ6ZMQ8 1374 aa20.26■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 MON2Q7Z3U7 1717 aa20.25■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 ZBTB7BO15156 539 aaPredicted RBP20.25■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 NUDT16Q96DE0 195 aaKnown RBP20.25■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 RTN4Q9NQC3 1192 aaKnown RBP20.25■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 PLEKHG5O94827 1062 aa20.25■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 IFT57Q9NWB7 429 aa20.25■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 ARHGAP45Q92619 1136 aa20.24■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 ORAI2Q96SN7 254 aa20.24■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 XPCQ01831 940 aaPredicted RBP20.23■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 SIRT1Q96EB6 747 aa20.23■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 GNAI1P63096 354 aa20.23■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 CALD1Q05682 793 aaKnown RBP20.23■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 CHD1LQ86WJ1 897 aa20.23■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 MBIPQ9NS73 344 aa20.23■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 ADGRL3Q9HAR2 1447 aa20.23■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 AKAP12Q02952 1782 aa20.22■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 LNPKQ9C0E8 428 aa20.22■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 ESCO1Q5FWF5 840 aa20.21■□□□□ 0.83
MSH5-SAPCD1-208ENST00000498473 LTBP4Q8N2S1 1624 aa20.2■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 SPRYD3Q8NCJ5 442 aa20.2■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 C19orf44Q9H6X5 657 aa20.2■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 ABCC4O15439 1325 aa20.2■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 ELL2O00472 640 aaPredicted RBP20.19■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 ATF3P18847 181 aa20.18■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 RBM25P49756 843 aaKnown RBP20.18■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 RRS1Q15050 365 aaKnown RBP20.18■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 C1orf115Q9H7X2 142 aa20.18■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 ITSN1Q15811 1721 aa20.18■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 SIRT2Q8IXJ6 389 aa20.18■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 C8orf58Q8NAV2 365 aa20.18■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 COG3Q96JB2 828 aa20.18■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 CFAP44Q96MT7 982 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms