RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	PRIMPOL	Q96LW4	560 aa		12.87	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	ERCC6L2	Q5T890	1561 aa		12.87	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	KIF20A	O95235	890 aa		12.87	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	UTP14C	Q5TAP6	766 aa	Known RBP	12.87	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	GIMAP6	Q6P9H5	292 aa		12.87	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	SLC4A10	Q6U841	1118 aa		12.87	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	NSD3	Q9BZ95	1437 aa		12.86	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	PIK3C2G	O75747	1445 aa		12.86	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	SRPK2	P78362	688 aa	Known RBP	12.86	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	KIAA0556	O60303	1618 aa		12.86	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	FBLN1	P23142	703 aa		12.85	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	TNNT3	P45378	269 aa	Predicted RBP	12.85	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	CWC22	Q9HCG8	908 aa	Known RBP	12.85	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	ARHGEF12	Q9NZN5	1544 aa		12.85	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	GCC1	Q96CN9	775 aa		12.85	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	PLB1	Q6P1J6	1458 aa		12.85	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	DISP1	Q96F81	1524 aa		12.85	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	PIBF1	Q8WXW3	757 aa		12.85	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	GSPT1	P15170	499 aa	Known RBP	12.84	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	TMX3	Q96JJ7	454 aa		12.84	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	WDR7	Q9Y4E6	1490 aa		12.84	□□□□□ -0.35
TRAPPC12-223	ENST00000497597		E9PCH4	1651 aa		12.84	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	REC8	O95072	547 aa		12.84	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	RTF1	Q92541	710 aa	Known RBP	12.84	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	ZFP91	Q96JP5	570 aa	Predicted RBP	12.84	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	USP48	Q86UV5	1035 aa		12.84	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	PYCARD	Q9ULZ3	195 aa		12.84	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	CABP2	Q9NPB3	220 aa		12.83	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	ZDHHC9	Q9Y397	364 aa		12.83	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	FBXW7	Q969H0	707 aa		12.83	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	SDS	P20132	328 aa		12.82	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	CAMK4	Q16566	473 aa		12.82	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	VPS37C	A5D8V6	355 aa	Predicted RBP	12.82	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	MCC	P23508	829 aa		12.82	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	USP26	Q9BXU7	913 aa		12.82	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	NUP153	P49790	1475 aa	Known RBP	12.82	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	TPD52L1	Q16890	204 aa	Predicted RBP	12.82	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	DDX54	Q8TDD1	881 aa	Known RBP	12.82	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	CNPY2	Q9Y2B0	182 aa		12.82	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	NCOA3	Q9Y6Q9	1424 aa		12.82	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	GOLGA6L6	A8MZA4	724 aa		12.81	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	TSPYL6	Q8N831	410 aa		12.81	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	TAOK2	Q9UL54	1235 aa		12.81	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	GOLGA6L4	A6NEF3	574 aa		12.81	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	PTGS1	P23219	599 aa		12.81	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	PLEKHM2	Q8IWE5	1019 aa		12.8	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	CCDC112	Q8NEF3	446 aa		12.8	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	JPH4	Q96JJ6	628 aa		12.8	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	TRIM5	Q9C035	493 aa		12.8	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	FAM135A	Q9P2D6	1515 aa		12.79	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	MAP4K4	O95819	1239 aa	Predicted RBP	12.79	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	PRKAR2B	P31323	418 aa		12.79	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	ERC2	O15083	957 aa		12.79	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	TNNT1	P13805	278 aa		12.79	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	IBTK	Q9P2D0	1353 aa	Predicted RBP	12.79	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	ADGRF5	Q8IZF2	1346 aa		12.79	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	LRMP	Q12912	555 aa		12.79	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	TTC22	Q5TAA0	569 aa		12.79	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	KIF3B	O15066	747 aa		12.78	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	CKAP2L	Q8IYA6	745 aa		12.78	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	DCTN1	Q14203	1278 aa		12.78	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	FERMT3	Q86UX7	667 aa		12.78	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	TRMT1	Q9NXH9	659 aa	Known RBP	12.78	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	CCDC186	Q7Z3E2	898 aa		12.78	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	TRIM34	Q9BYJ4	488 aa		12.78	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	CCDC66	A2RUB6	948 aa		12.77	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	ZBTB7B	O15156	539 aa	Predicted RBP	12.77	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	SOX12	O15370	315 aa		12.77	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	GORAB	Q5T7V8	394 aa		12.77	□□□□□ -0.36
TRAPPC12-223	ENST00000497597	SIRT2	Q8IXJ6	389 aa		12.77	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	ST7	Q9NRC1	585 aa		12.77	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	EXOC6B	Q9Y2D4	811 aa		12.77	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	UHRF1BP1L	A0JNW5	1464 aa		12.77	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	DIAPH1	O60610	1272 aa	Known RBP	12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	TRIM35	Q9UPQ4	493 aa		12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	POLR3A	O14802	1390 aa	Predicted RBP	12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	CCDC183	Q5T5S1	534 aa		12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	ADCY10	Q96PN6	1610 aa		12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	GTF2F1	P35269	517 aa	Known RBP eCLIP	12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	IRX5	P78411	483 aa	Predicted RBP	12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	TWISTNB	Q3B726	338 aa	Predicted RBP	12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	SYTL4	Q96C24	671 aa	Predicted RBP	12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	CHMP4C	Q96CF2	233 aa		12.76	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	FKBP5	Q13451	457 aa	Predicted RBP	12.75	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	FAM184A	Q8NB25	1140 aa		12.75	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	IPO4	Q8TEX9	1081 aa	Known RBP	12.75	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	NECTIN2	Q92692	538 aa		12.75	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	TMX1	Q9H3N1	280 aa		12.75	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	POLR3G	O15318	223 aa	Predicted RBP	12.75	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	ABCA8	O94911	1581 aa		12.75	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	KDM4A	O75164	1064 aa		12.75	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	SMC3	Q9UQE7	1217 aa		12.75	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	KDM5D	Q9BY66	1539 aa		12.75	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	FILIP1	Q7Z7B0	1213 aa		12.74	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	OGFR	Q9NZT2	677 aa		12.74	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	PALD1	Q9ULE6	856 aa		12.74	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	KRT24	Q2M2I5	525 aa		12.74	□□□□□ -0.37
TRAPPC12-223	ENST00000497597	TIGD1	Q96MW7	591 aa		12.74	□□□□□ -0.37

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