RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-208ENST00000497498 PTK2Q05397 1052 aa8.6□□□□□ -1.03
CBX3-208ENST00000497498 CCDC116Q8IYX3 515 aa8.6□□□□□ -1.03
CBX3-208ENST00000497498 MEIOBQ8N635 442 aa8.6□□□□□ -1.03
CBX3-208ENST00000497498 IL27Q8NEV9 243 aa8.6□□□□□ -1.03
CBX3-208ENST00000497498 CDV3Q9UKY7 258 aaKnown RBP8.6□□□□□ -1.03
CBX3-208ENST00000497498 EMILIN1Q9Y6C2 1016 aa8.6□□□□□ -1.03
CBX3-208ENST00000497498 BRPF1P55201 1214 aaPredicted RBP8.59□□□□□ -1.03
CBX3-208ENST00000497498 ZBTB33Q86T24 672 aa8.59□□□□□ -1.03
CBX3-208ENST00000497498 TMEM259Q4ZIN3 620 aa8.58□□□□□ -1.04
CBX3-208ENST00000497498 SLC10A4Q96EP9 437 aa8.58□□□□□ -1.04
CBX3-208ENST00000497498 PNMA1Q8ND90 353 aa8.57□□□□□ -1.04
CBX3-208ENST00000497498 SLC16A10Q8TF71 515 aa8.57□□□□□ -1.04
CBX3-208ENST00000497498 KCTD15Q96SI1 283 aaPredicted RBP8.57□□□□□ -1.04
CBX3-208ENST00000497498 PPP1R26Q5T8A7 1209 aaPredicted RBP8.56□□□□□ -1.04
CBX3-208ENST00000497498 LINC00528Q8N1L1 170 aa8.56□□□□□ -1.04
CBX3-208ENST00000497498 ADAM32Q8TC27 787 aa8.56□□□□□ -1.04
CBX3-208ENST00000497498 TRIM34Q9BYJ4 488 aa8.56□□□□□ -1.04
CBX3-208ENST00000497498 H3BM21 787 aa8.55□□□□□ -1.04
CBX3-208ENST00000497498 UPP2O95045 317 aa8.55□□□□□ -1.04
CBX3-208ENST00000497498 BMP2P12643 396 aa8.55□□□□□ -1.04
CBX3-208ENST00000497498 C6orf118Q5T5N4 469 aa8.55□□□□□ -1.04
CBX3-208ENST00000497498 TSEN34Q9BSV6 310 aaKnown RBP8.55□□□□□ -1.04
CBX3-208ENST00000497498 Q6ZVU0 165 aa8.54□□□□□ -1.04
CBX3-208ENST00000497498 PGPEP1Q9NXJ5 209 aa8.54□□□□□ -1.04
CBX3-208ENST00000497498 SOBPA7XYQ1 873 aa8.53□□□□□ -1.04
CBX3-208ENST00000497498 DHX9Q08211 1270 aaKnown RBP8.53□□□□□ -1.04
CBX3-208ENST00000497498 INTS6LQ5JSJ4 861 aaKnown RBP8.53□□□□□ -1.04
CBX3-208ENST00000497498 SOS2Q07890 1332 aaPredicted RBP8.53□□□□□ -1.04
CBX3-208ENST00000497498 MAN1A2O60476 641 aa8.52□□□□□ -1.05
CBX3-208ENST00000497498 VEGFBP49765 207 aa8.52□□□□□ -1.05
CBX3-208ENST00000497498 INSM1Q01101 510 aaPredicted RBP8.52□□□□□ -1.05
CBX3-208ENST00000497498 IRF7Q92985 503 aa8.52□□□□□ -1.05
CBX3-208ENST00000497498 GJD4Q96KN9 370 aaPredicted RBP8.52□□□□□ -1.05
CBX3-208ENST00000497498 CBLBQ13191 982 aa8.51□□□□□ -1.05
CBX3-208ENST00000497498 NBPF20Q3BBV1 942 aa8.51□□□□□ -1.05
CBX3-208ENST00000497498 TPRNQ4KMQ1 711 aa8.5□□□□□ -1.05
CBX3-208ENST00000497498 ESPNB1AK53 854 aa8.49□□□□□ -1.05
CBX3-208ENST00000497498 GMPRP36959 345 aa8.49□□□□□ -1.05
CBX3-208ENST00000497498 DZIP3Q86Y13 1208 aaKnown RBP8.49□□□□□ -1.05
CBX3-208ENST00000497498 DNMT3LQ9UJW3 386 aa8.49□□□□□ -1.05
CBX3-208ENST00000497498 ERBB4Q15303 1308 aa8.49□□□□□ -1.05
CBX3-208ENST00000497498 SOCS7O14512 581 aa8.48□□□□□ -1.05
CBX3-208ENST00000497498 SPINT1O43278 529 aa8.48□□□□□ -1.05
CBX3-208ENST00000497498 BANK1Q8NDB2 785 aa8.48□□□□□ -1.05
CBX3-208ENST00000497498 TTLL8A6PVC2 850 aa8.47□□□□□ -1.05
CBX3-208ENST00000497498 VSIG8P0DPA2 414 aa8.47□□□□□ -1.05
CBX3-208ENST00000497498 STK17AQ9UEE5 414 aa8.47□□□□□ -1.05
CBX3-208ENST00000497498 ZBBXA8MT70 800 aa8.46□□□□□ -1.06
CBX3-208ENST00000497498 SEPT12Q8IYM1 358 aa8.46□□□□□ -1.06
CBX3-208ENST00000497498 TMPRSS4Q9NRS4 437 aa8.46□□□□□ -1.06
CBX3-208ENST00000497498 ERVH48-1M5A8F1 160 aa8.45□□□□□ -1.06
CBX3-208ENST00000497498 LILRA1O75019 489 aa8.45□□□□□ -1.06
CBX3-208ENST00000497498 PPFIA3O75145 1194 aa8.45□□□□□ -1.06
CBX3-208ENST00000497498 FBXO45P0C2W1 286 aa8.45□□□□□ -1.06
CBX3-208ENST00000497498 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.45□□□□□ -1.065e-25■□□□□ 10.5
CBX3-208ENST00000497498 ZNF784Q8NCA9 323 aaPredicted RBP8.45□□□□□ -1.06
CBX3-208ENST00000497498 LORP23490 312 aaPredicted RBP8.44□□□□□ -1.06
CBX3-208ENST00000497498 AGBL1Q96MI9 1066 aa8.44□□□□□ -1.06
CBX3-208ENST00000497498 GPR37L1O60883 481 aa8.43□□□□□ -1.06
CBX3-208ENST00000497498 ADD1P35611 737 aaKnown RBP8.43□□□□□ -1.06
CBX3-208ENST00000497498 RAB15P59190 212 aa8.43□□□□□ -1.06
CBX3-208ENST00000497498 MTMR14Q8NCE2 650 aa8.43□□□□□ -1.06
CBX3-208ENST00000497498 ADH1AP07327 375 aa8.42□□□□□ -1.06
CBX3-208ENST00000497498 RELBQ01201 579 aa8.42□□□□□ -1.06
CBX3-208ENST00000497498 KDF1Q8NAX2 398 aaPredicted RBP8.42□□□□□ -1.06
CBX3-208ENST00000497498 FIGNL2A6NMB9 653 aa8.41□□□□□ -1.06
CBX3-208ENST00000497498 GIGYF1O75420 1035 aaPredicted RBP8.41□□□□□ -1.06
CBX3-208ENST00000497498 CTSOP43234 321 aaPredicted RBP8.41□□□□□ -1.06
CBX3-208ENST00000497498 PTSQ03393 145 aa8.41□□□□□ -1.06
CBX3-208ENST00000497498 PCDHB9Q9Y5E1 797 aa8.41□□□□□ -1.06
CBX3-208ENST00000497498 MCCD1P59942 119 aaPredicted RBP8.4□□□□□ -1.06
CBX3-208ENST00000497498 NR1H3Q13133 447 aa8.4□□□□□ -1.06
CBX3-208ENST00000497498 CCDC125Q86Z20 511 aa8.4□□□□□ -1.06
CBX3-208ENST00000497498 INSM2Q96T92 566 aaPredicted RBP8.4□□□□□ -1.06
CBX3-208ENST00000497498 SNRKQ9NRH2 765 aa8.4□□□□□ -1.06
CBX3-208ENST00000497498 ZSCAN1Q8NBB4 408 aa8.39□□□□□ -1.07
CBX3-208ENST00000497498 TRIM52Q96A61 297 aa8.39□□□□□ -1.07
CBX3-208ENST00000497498 ZNF395Q9H8N7 513 aaPredicted RBP8.39□□□□□ -1.07
CBX3-208ENST00000497498 NDUFB9Q9Y6M9 179 aa8.39□□□□□ -1.07
CBX3-208ENST00000497498 APBB1O00213 710 aa8.38□□□□□ -1.07
CBX3-208ENST00000497498 PTGIRP43119 386 aa8.38□□□□□ -1.07
CBX3-208ENST00000497498 RNF217Q8TC41 542 aa8.38□□□□□ -1.07
CBX3-208ENST00000497498 SLC35F4A4IF30 521 aa8.37□□□□□ -1.07
CBX3-208ENST00000497498 CCDC155Q8N6L0 562 aa8.37□□□□□ -1.07
CBX3-208ENST00000497498 ZNF592Q92610 1267 aa8.37□□□□□ -1.07
CBX3-208ENST00000497498 CYLDQ9NQC7 956 aa8.37□□□□□ -1.07
CBX3-208ENST00000497498 RNF20Q5VTR2 975 aa8.36□□□□□ -1.07
CBX3-208ENST00000497498 NANOS1Q8WY41 292 aaKnown RBP8.36□□□□□ -1.07
CBX3-208ENST00000497498 POLMQ9NP87 494 aaPredicted RBP8.36□□□□□ -1.07
CBX3-208ENST00000497498 FAM181BA6NEQ2 426 aa8.35□□□□□ -1.07
CBX3-208ENST00000497498 FOXD4L5Q5VV16 416 aaPredicted RBP8.35□□□□□ -1.07
CBX3-208ENST00000497498 ZNF330Q9Y3S2 320 aaPredicted RBP8.35□□□□□ -1.07
CBX3-208ENST00000497498 ERVK-9P63128 1117 aa8.34□□□□□ -1.07
CBX3-208ENST00000497498 GPR161Q8N6U8 529 aaKnown RBP8.34□□□□□ -1.07
CBX3-208ENST00000497498 SENP3-EIF4A1A0A087X0R7 540 aa8.33□□□□□ -1.08
CBX3-208ENST00000497498 RNF144AP50876 292 aaPredicted RBP8.33□□□□□ -1.08
CBX3-208ENST00000497498 ATP5J2-PTCD1G3V325 749 aa8.32□□□□□ -1.08
CBX3-208ENST00000497498 ITGA6P23229 1130 aa8.32□□□□□ -1.08
CBX3-208ENST00000497498 CC2D2BQ6DHV5 1058 aa8.32□□□□□ -1.08
CBX3-208ENST00000497498 KRT76Q01546 638 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms