RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 GPSM3Q9Y4H4 160 aa8.1□□□□□ -1.11
SMC4-225ENST00000497203 ARID5BQ14865 1188 aa8.09□□□□□ -1.11
SMC4-225ENST00000497203 ZBTB33Q86T24 672 aa8.09□□□□□ -1.11
SMC4-225ENST00000497203 MPNDQ8N594 471 aa8.09□□□□□ -1.11
SMC4-225ENST00000497203 ADAM32Q8TC27 787 aa8.09□□□□□ -1.11
SMC4-225ENST00000497203 FBXO45P0C2W1 286 aa8.08□□□□□ -1.12
SMC4-225ENST00000497203 TRMT44Q8IYL2 757 aaKnown RBP8.08□□□□□ -1.12
SMC4-225ENST00000497203 HPS1Q92902 700 aa8.08□□□□□ -1.12
SMC4-225ENST00000497203 CDK15Q96Q40 435 aa8.08□□□□□ -1.12
SMC4-225ENST00000497203 GDPD2Q9HCC8 539 aa8.08□□□□□ -1.12
SMC4-225ENST00000497203 ZBBXA8MT70 800 aa8.07□□□□□ -1.12
SMC4-225ENST00000497203 ZSCAN1Q8NBB4 408 aa8.07□□□□□ -1.12
SMC4-225ENST00000497203 FLIIQ13045 1269 aa8.06□□□□□ -1.12
SMC4-225ENST00000497203 IRF5Q13568 498 aa8.06□□□□□ -1.12
SMC4-225ENST00000497203 WASF2Q9Y6W5 498 aa8.06□□□□□ -1.12
SMC4-225ENST00000497203 ADH1CP00326 375 aa8.05□□□□□ -1.12
SMC4-225ENST00000497203 GRM5P41594 1212 aa8.05□□□□□ -1.12
SMC4-225ENST00000497203 SLC10A4Q96EP9 437 aa8.05□□□□□ -1.12
SMC4-225ENST00000497203 POM121Q96HA1 1249 aa8.05□□□□□ -1.12
SMC4-225ENST00000497203 PRM3Q9NNZ6 103 aa8.05□□□□□ -1.12
SMC4-225ENST00000497203 COG6Q9Y2V7 657 aa8.05□□□□□ -1.12
SMC4-225ENST00000497203 MAP4K5Q9Y4K4 846 aa8.05□□□□□ -1.12
SMC4-225ENST00000497203 ABL2P42684 1182 aa8.04□□□□□ -1.12
SMC4-225ENST00000497203 NR1H3Q13133 447 aa8.04□□□□□ -1.12
SMC4-225ENST00000497203 VASH1Q7L8A9 365 aaPredicted RBP8.04□□□□□ -1.12
SMC4-225ENST00000497203 NR3C2P08235 984 aa8.03□□□□□ -1.12
SMC4-225ENST00000497203 NNTQ13423 1086 aa8.03□□□□□ -1.12
SMC4-225ENST00000497203 UBTFP17480 764 aaKnown RBP8.02□□□□□ -1.13
SMC4-225ENST00000497203 FSHRP23945 695 aa8.02□□□□□ -1.13
SMC4-225ENST00000497203 NPAS3Q8IXF0 933 aa8.02□□□□□ -1.13
SMC4-225ENST00000497203 KCTD17Q8N5Z5 321 aa8.02□□□□□ -1.13
SMC4-225ENST00000497203 SLC16A10Q8TF71 515 aa8.02□□□□□ -1.13
SMC4-225ENST00000497203 KRTAP4-8Q9BYQ9 185 aa8.02□□□□□ -1.13
SMC4-225ENST00000497203 NXF1Q9UBU9 619 aaKnown RBP8.02□□□□□ -1.13
SMC4-225ENST00000497203 PCDHB9Q9Y5E1 797 aa8.02□□□□□ -1.13
SMC4-225ENST00000497203 GMPRP36959 345 aa8.01□□□□□ -1.13
SMC4-225ENST00000497203 NR5A1Q13285 461 aa8.01□□□□□ -1.13
SMC4-225ENST00000497203 DZIP3Q86Y13 1208 aaKnown RBP8.01□□□□□ -1.13
SMC4-225ENST00000497203 KCTD15Q96SI1 283 aaPredicted RBP8.01□□□□□ -1.13
SMC4-225ENST00000497203 CDV3Q9UKY7 258 aaKnown RBP8□□□□□ -1.13
SMC4-225ENST00000497203 VAC14Q08AM6 782 aa7.99□□□□□ -1.13
SMC4-225ENST00000497203 INTS6LQ5JSJ4 861 aaKnown RBP7.99□□□□□ -1.13
SMC4-225ENST00000497203 KLF16Q9BXK1 252 aaPredicted RBP7.99□□□□□ -1.13
SMC4-225ENST00000497203 RAD21O60216 631 aa7.98□□□□□ -1.13
SMC4-225ENST00000497203 TIMP2P16035 220 aa7.98□□□□□ -1.13
SMC4-225ENST00000497203 WDR4P57081 412 aaKnown RBP7.98□□□□□ -1.13
SMC4-225ENST00000497203 NBPF20Q3BBV1 942 aa7.98□□□□□ -1.13
SMC4-225ENST00000497203 XP32Q5T750 250 aa7.98□□□□□ -1.13
SMC4-225ENST00000497203 IRF7Q92985 503 aa7.98□□□□□ -1.13
SMC4-225ENST00000497203 CLUAP1Q96AJ1 413 aa7.98□□□□□ -1.13
SMC4-225ENST00000497203 H3BM21 787 aa7.97□□□□□ -1.13
SMC4-225ENST00000497203 GIGYF1O75420 1035 aaPredicted RBP7.97□□□□□ -1.13
SMC4-225ENST00000497203 GSK3AP49840 483 aa7.97□□□□□ -1.13
SMC4-225ENST00000497203 RAB15P59190 212 aa7.97□□□□□ -1.13
SMC4-225ENST00000497203 TRIM46Q7Z4K8 759 aa7.97□□□□□ -1.13
SMC4-225ENST00000497203 CCDC116Q8IYX3 515 aa7.97□□□□□ -1.13
SMC4-225ENST00000497203 ITPKCQ96DU7 683 aa7.97□□□□□ -1.13
SMC4-225ENST00000497203 ZFAND3Q9H8U3 227 aa7.97□□□□□ -1.13
SMC4-225ENST00000497203 ESPNB1AK53 854 aa7.96□□□□□ -1.14
SMC4-225ENST00000497203 CAPN5O15484 640 aaPredicted RBP7.96□□□□□ -1.14
SMC4-225ENST00000497203 ZIC2O95409 532 aaPredicted RBP7.96□□□□□ -1.14
SMC4-225ENST00000497203 PPP1R26Q5T8A7 1209 aaPredicted RBP7.96□□□□□ -1.14
SMC4-225ENST00000497203 ZNF330Q9Y3S2 320 aaPredicted RBP7.96□□□□□ -1.14
SMC4-225ENST00000497203 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.95□□□□□ -1.14
SMC4-225ENST00000497203 BMP1P13497 986 aa7.95□□□□□ -1.14
SMC4-225ENST00000497203 WASHC4Q2M389 1173 aa7.95□□□□□ -1.14
SMC4-225ENST00000497203 EIF4G2P78344 907 aaKnown RBP eCLIP7.94□□□□□ -1.14
SMC4-225ENST00000497203 KCNMA1Q12791 1236 aa7.94□□□□□ -1.14
SMC4-225ENST00000497203 EMILIN1Q9Y6C2 1016 aa7.94□□□□□ -1.14
SMC4-225ENST00000497203 ERBB4Q15303 1308 aa7.94□□□□□ -1.14
SMC4-225ENST00000497203 ERVH48-1M5A8F1 160 aa7.93□□□□□ -1.14
SMC4-225ENST00000497203 MCCD1P59942 119 aaPredicted RBP7.93□□□□□ -1.14
SMC4-225ENST00000497203 TMPRSS4Q9NRS4 437 aa7.93□□□□□ -1.14
SMC4-225ENST00000497203 CEP126Q9P2H0 1117 aa7.93□□□□□ -1.14
SMC4-225ENST00000497203 POM121CA8CG34 1229 aa7.92□□□□□ -1.14
SMC4-225ENST00000497203 DHX9Q08211 1270 aaKnown RBP7.92□□□□□ -1.14
SMC4-225ENST00000497203 SEPT12Q8IYM1 358 aa7.92□□□□□ -1.14
SMC4-225ENST00000497203 VEGFBP49765 207 aa7.91□□□□□ -1.14
SMC4-225ENST00000497203 CBLBQ13191 982 aa7.91□□□□□ -1.14
SMC4-225ENST00000497203 PROSER2Q86WR7 435 aaPredicted RBP7.91□□□□□ -1.14
SMC4-225ENST00000497203 WWC1Q8IX03 1113 aa7.91□□□□□ -1.14
SMC4-225ENST00000497203 FNBP4Q8N3X1 1017 aaPredicted RBP7.91□□□□□ -1.14
SMC4-225ENST00000497203 ZNF592Q92610 1267 aa7.91□□□□□ -1.14
SMC4-225ENST00000497203 KRTAP9-2Q9BYQ4 174 aa7.91□□□□□ -1.14
SMC4-225ENST00000497203 ZMYND15Q9H091 742 aa7.91□□□□□ -1.14
SMC4-225ENST00000497203 PGPEP1Q9NXJ5 209 aa7.91□□□□□ -1.14
SMC4-225ENST00000497203 A6NJR5 290 aa7.9□□□□□ -1.14
SMC4-225ENST00000497203 ZNF784Q8NCA9 323 aaPredicted RBP7.9□□□□□ -1.14
SMC4-225ENST00000497203 LILRA1O75019 489 aa7.89□□□□□ -1.15
SMC4-225ENST00000497203 SOX11P35716 441 aa7.89□□□□□ -1.15
SMC4-225ENST00000497203 RNF20Q5VTR2 975 aa7.89□□□□□ -1.15
SMC4-225ENST00000497203 MEIOBQ8N635 442 aa7.89□□□□□ -1.15
SMC4-225ENST00000497203 ALG2Q9H553 416 aa7.89□□□□□ -1.15
SMC4-225ENST00000497203 KRTAP9-6A0A140TA67 174 aa7.88□□□□□ -1.15
SMC4-225ENST00000497203 VSIG8P0DPA2 414 aa7.88□□□□□ -1.15
SMC4-225ENST00000497203 SEMA3FQ13275 785 aa7.88□□□□□ -1.15
SMC4-225ENST00000497203 MRPL14Q6P1L8 145 aaKnown RBP7.88□□□□□ -1.15
SMC4-225ENST00000497203 PHTF2Q8N3S3 785 aa7.88□□□□□ -1.15
SMC4-225ENST00000497203 ADAMTS19Q8TE59 1207 aa7.88□□□□□ -1.15
SMC4-225ENST00000497203 CCDC85AQ96PX6 553 aaPredicted RBP7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms