RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FRAT1Q92837 279 aaPredicted RBP10.7□□□□□ -0.7
USP54-215ENST00000497106 TATP17735 454 aaPredicted RBP10.7□□□□□ -0.7
USP54-215ENST00000497106 STK31Q9BXU1 1019 aa10.7□□□□□ -0.7
USP54-215ENST00000497106 HTATSF1O43719 755 aaKnown RBP10.7□□□□□ -0.7
USP54-215ENST00000497106 IP6K1Q92551 441 aa10.7□□□□□ -0.7
USP54-215ENST00000497106 IFT57Q9NWB7 429 aa10.7□□□□□ -0.7
USP54-215ENST00000497106 TOM1O60784 492 aa10.69□□□□□ -0.7
USP54-215ENST00000497106 TEFQ10587 303 aa10.69□□□□□ -0.7
USP54-215ENST00000497106 XRN1Q8IZH2 1706 aaKnown RBP10.69□□□□□ -0.7
USP54-215ENST00000497106 HSP90AB1P08238 724 aaKnown RBP10.69□□□□□ -0.7
USP54-215ENST00000497106 NLRP2Q9NX02 1062 aa10.69□□□□□ -0.7
USP54-215ENST00000497106 MAP3K19Q56UN5 1328 aa10.69□□□□□ -0.7
USP54-215ENST00000497106 IL13P35225 146 aa10.69□□□□□ -0.7
USP54-215ENST00000497106 EIF4A2Q14240 407 aaKnown RBP10.69□□□□□ -0.7
USP54-215ENST00000497106 PRDM11Q9NQV5 511 aa10.69□□□□□ -0.7
USP54-215ENST00000497106 SPG7Q9UQ90 795 aa10.69□□□□□ -0.7
USP54-215ENST00000497106 ZKSCAN2Q63HK3 967 aa10.68□□□□□ -0.7
USP54-215ENST00000497106 KDM4FA0A1W2PPD8 638 aa10.68□□□□□ -0.7
USP54-215ENST00000497106 XPCQ01831 940 aaPredicted RBP10.68□□□□□ -0.7
USP54-215ENST00000497106 ORAI2Q96SN7 254 aa10.68□□□□□ -0.7
USP54-215ENST00000497106 HOXC9P31274 260 aa10.68□□□□□ -0.7
USP54-215ENST00000497106 SLAIN2Q9P270 581 aa10.68□□□□□ -0.7
USP54-215ENST00000497106 ZRANB1Q9UGI0 708 aa10.68□□□□□ -0.7
USP54-215ENST00000497106 SETD1AO15047 1707 aaKnown RBP10.68□□□□□ -0.7
USP54-215ENST00000497106 C1orf167Q5SNV9 1468 aa10.68□□□□□ -0.7
USP54-215ENST00000497106 GCP02774 474 aa10.67□□□□□ -0.7
USP54-215ENST00000497106 PNPLA6Q8IY17 1366 aa10.67□□□□□ -0.7
USP54-215ENST00000497106 KIF20BQ96Q89 1820 aa10.67□□□□□ -0.7
USP54-215ENST00000497106 LMTK3Q96Q04 1460 aa10.67□□□□□ -0.7
USP54-215ENST00000497106 CD163L1Q9NR16 1453 aa10.67□□□□□ -0.7
USP54-215ENST00000497106 NPM2Q86SE8 214 aaKnown RBP10.67□□□□□ -0.7
USP54-215ENST00000497106 API5Q9BZZ5 524 aaKnown RBP10.67□□□□□ -0.7
USP54-215ENST00000497106 RSPH6AQ9H0K4 717 aa10.67□□□□□ -0.7
USP54-215ENST00000497106 HDAC5Q9UQL6 1122 aa10.67□□□□□ -0.7
USP54-215ENST00000497106 OVOS2A0A0J9YW53 1432 aa10.66□□□□□ -0.7
USP54-215ENST00000497106 OVOS2Q6IE36 1432 aa10.66□□□□□ -0.7
USP54-215ENST00000497106 CDCA7LQ96GN5 454 aa10.66□□□□□ -0.7
USP54-215ENST00000497106 GNAT3A8MTJ3 354 aa10.66□□□□□ -0.7
USP54-215ENST00000497106 ANP32EQ9BTT0 268 aa10.66□□□□□ -0.7
USP54-215ENST00000497106 PDE3AQ14432 1141 aa10.66□□□□□ -0.7
USP54-215ENST00000497106 LRRC59Q96AG4 307 aaKnown RBP10.66□□□□□ -0.7
USP54-215ENST00000497106 TSPYL4Q9UJ04 414 aa10.66□□□□□ -0.7
USP54-215ENST00000497106 NWD1Q149M9 1564 aa10.66□□□□□ -0.7
USP54-215ENST00000497106 HSP90AB2PQ58FF8 381 aa10.65□□□□□ -0.7
USP54-215ENST00000497106 KIF1AQ12756 1690 aa10.65□□□□□ -0.7
USP54-215ENST00000497106 EIF5BO60841 1220 aaKnown RBP10.65□□□□□ -0.7
USP54-215ENST00000497106 DUSP27Q5VZP5 1158 aa10.65□□□□□ -0.7
USP54-215ENST00000497106 ANKRD24Q8TF21 1146 aa10.65□□□□□ -0.71
USP54-215ENST00000497106 ALDH1L2Q3SY69 923 aa10.64□□□□□ -0.71
USP54-215ENST00000497106 ZNF530Q6P9A1 599 aaPredicted RBP10.64□□□□□ -0.71
USP54-215ENST00000497106 ZC3H6P61129 1189 aaKnown RBP10.64□□□□□ -0.71
USP54-215ENST00000497106 SOS1Q07889 1333 aaPredicted RBP10.63□□□□□ -0.71
USP54-215ENST00000497106 BABAM1Q9NWV8 329 aa10.63□□□□□ -0.71
USP54-215ENST00000497106 CFAP44Q96MT7 982 aa10.63□□□□□ -0.71
USP54-215ENST00000497106 ZNF335Q9H4Z2 1342 aaPredicted RBP10.63□□□□□ -0.71
USP54-215ENST00000497106 FMN2Q9NZ56 1722 aa10.63□□□□□ -0.71
USP54-215ENST00000497106 ANKRD26Q9UPS8 1709 aa10.63□□□□□ -0.71
USP54-215ENST00000497106 TOM1L2Q6ZVM7 507 aa10.63□□□□□ -0.71
USP54-215ENST00000497106 DDX19BQ9UMR2 479 aa10.63□□□□□ -0.71
USP54-215ENST00000497106 TNS3Q68CZ2 1445 aa10.63□□□□□ -0.71
USP54-215ENST00000497106 EXOSC9Q06265 439 aaKnown RBP10.62□□□□□ -0.71
USP54-215ENST00000497106 RWDD1Q9H446 243 aaPredicted RBP10.62□□□□□ -0.71
USP54-215ENST00000497106 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.62□□□□□ -0.71
USP54-215ENST00000497106 TTC5Q8N0Z6 440 aa10.62□□□□□ -0.71
USP54-215ENST00000497106 FANCIQ9NVI1 1328 aa10.62□□□□□ -0.71
USP54-215ENST00000497106 DZIP1LQ8IYY4 767 aaKnown RBP10.62□□□□□ -0.71
USP54-215ENST00000497106 DAXXQ9UER7 740 aaPredicted RBP10.62□□□□□ -0.71
USP54-215ENST00000497106 CHD2O14647 1828 aaKnown RBP10.61□□□□□ -0.71
USP54-215ENST00000497106 TWISTNBQ3B726 338 aaPredicted RBP10.61□□□□□ -0.71
USP54-215ENST00000497106 CCDC30Q5VVM6 783 aa10.61□□□□□ -0.71
USP54-215ENST00000497106 ITPRIPQ8IWB1 547 aa10.61□□□□□ -0.71
USP54-215ENST00000497106 EYA1Q99502 592 aa10.61□□□□□ -0.71
USP54-215ENST00000497106 MON2Q7Z3U7 1717 aa10.6□□□□□ -0.71
USP54-215ENST00000497106 IGSF1Q8N6C5 1336 aa10.6□□□□□ -0.71
USP54-215ENST00000497106 LRRC7Q96NW7 1537 aa10.6□□□□□ -0.71
USP54-215ENST00000497106 MST1RQ04912 1400 aa10.6□□□□□ -0.71
USP54-215ENST00000497106 MAP3K5Q99683 1374 aa10.6□□□□□ -0.71
USP54-215ENST00000497106 SPATA31A3Q5VYP0 1347 aa10.6□□□□□ -0.71
USP54-215ENST00000497106 ARHGEF25Q86VW2 580 aa10.6□□□□□ -0.71
USP54-215ENST00000497106 PLEKHF1Q96S99 279 aa10.6□□□□□ -0.71
USP54-215ENST00000497106 CCDC9Q9Y3X0 531 aaKnown RBP10.6□□□□□ -0.71
USP54-215ENST00000497106 TAF7Q15545 349 aaPredicted RBP10.59□□□□□ -0.71
USP54-215ENST00000497106 AKAP4Q5JQC9 854 aa10.59□□□□□ -0.71
USP54-215ENST00000497106 CENPQQ7L2Z9 268 aaPredicted RBP10.59□□□□□ -0.71
USP54-215ENST00000497106 FBLN1P23142 703 aa10.59□□□□□ -0.71
USP54-215ENST00000497106 BRINP3Q76B58 766 aa10.59□□□□□ -0.71
USP54-215ENST00000497106 ZNF521Q96K83 1311 aa10.59□□□□□ -0.71
USP54-215ENST00000497106 CRBNQ96SW2 442 aa10.58□□□□□ -0.72
USP54-215ENST00000497106 SSH2Q76I76 1423 aa10.58□□□□□ -0.72
USP54-215ENST00000497106 AKAP12Q02952 1782 aa10.58□□□□□ -0.72
USP54-215ENST00000497106 TOPAZ1Q8N9V7 1692 aa10.58□□□□□ -0.72
USP54-215ENST00000497106 B4GALNT3Q6L9W6 998 aa10.58□□□□□ -0.72
USP54-215ENST00000497106 USP19O94966 1318 aa10.58□□□□□ -0.72
USP54-215ENST00000497106 TSR2Q969E8 191 aaKnown RBP10.58□□□□□ -0.72
USP54-215ENST00000497106 HMMRO75330 724 aa10.57□□□□□ -0.72
USP54-215ENST00000497106 DDX58O95786 925 aaKnown RBP10.57□□□□□ -0.72
USP54-215ENST00000497106 RARSP54136 660 aaKnown RBP10.57□□□□□ -0.72
USP54-215ENST00000497106 MEX3CQ5U5Q3 659 aaKnown RBP10.57□□□□□ -0.72
USP54-215ENST00000497106 IFNL2Q8IZJ0 200 aa10.57□□□□□ -0.72
USP54-215ENST00000497106 STRN4Q9NRL3 753 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms