RNA–Protein interactions for RNA: ENST00000497089.1

HOXA9-206, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 1,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-206ENST00000497089 SLC4A5Q9BY07 1137 aa9.74□□□□□ -0.85
HOXA9-206ENST00000497089 SCAF11Q99590 1463 aaKnown RBP9.73□□□□□ -0.85
HOXA9-206ENST00000497089 IQGAP3Q86VI3 1631 aa9.73□□□□□ -0.85
HOXA9-206ENST00000497089 PDE4DQ08499 809 aa9.73□□□□□ -0.85
HOXA9-206ENST00000497089 TRIM6-TRIM34B2RNG4 842 aa9.72□□□□□ -0.85
HOXA9-206ENST00000497089 LSM11P83369 360 aaKnown RBP eCLIP9.72□□□□□ -0.85
HOXA9-206ENST00000497089 IDI1Q13907 227 aa9.72□□□□□ -0.85
HOXA9-206ENST00000497089 PROX2Q3B8N5 592 aa9.72□□□□□ -0.85
HOXA9-206ENST00000497089 CCDC102AQ96A19 550 aa9.72□□□□□ -0.85
HOXA9-206ENST00000497089 SLC52A1Q9NWF4 448 aa9.72□□□□□ -0.85
HOXA9-206ENST00000497089 TMEM2Q9UHN6 1383 aa9.72□□□□□ -0.85
HOXA9-206ENST00000497089 ONECUT3O60422 494 aaPredicted RBP9.71□□□□□ -0.86
HOXA9-206ENST00000497089 LTKP29376 864 aa9.71□□□□□ -0.86
HOXA9-206ENST00000497089 TRIM26Q12899 539 aaPredicted RBP9.71□□□□□ -0.86
HOXA9-206ENST00000497089 CDAN1Q8IWY9 1227 aa9.71□□□□□ -0.86
HOXA9-206ENST00000497089 GPBP1L1Q9HC44 474 aaPredicted RBP9.71□□□□□ -0.86
HOXA9-206ENST00000497089 TSKSQ9UJT2 592 aa9.71□□□□□ -0.86
HOXA9-206ENST00000497089 ADGRB3O60242 1522 aa9.71□□□□□ -0.86
HOXA9-206ENST00000497089 E9PCH4 1651 aa9.71□□□□□ -0.86
HOXA9-206ENST00000497089 KRTAP3-3Q9BYR6 98 aa9.7□□□□□ -0.86
HOXA9-206ENST00000497089 KRTAP3-2Q9BYR7 98 aa9.7□□□□□ -0.86
HOXA9-206ENST00000497089 KDM4CQ9H3R0 1056 aa9.7□□□□□ -0.86
HOXA9-206ENST00000497089 FAM198AQ9UFP1 575 aa9.7□□□□□ -0.86
HOXA9-206ENST00000497089 VPS9D1Q9Y2B5 631 aa9.7□□□□□ -0.86
HOXA9-206ENST00000497089 STRCP1A6NGW2 1772 aa9.69□□□□□ -0.86
HOXA9-206ENST00000497089 TK2O00142 265 aa9.69□□□□□ -0.86
HOXA9-206ENST00000497089 TXNDC2Q86VQ3 553 aa9.69□□□□□ -0.86
HOXA9-206ENST00000497089 PACS2Q86VP3 889 aa9.68□□□□□ -0.86
HOXA9-206ENST00000497089 EID1Q9Y6B2 187 aa9.68□□□□□ -0.86
HOXA9-206ENST00000497089 TMEM131LA2VDJ0 1609 aa9.68□□□□□ -0.86
HOXA9-206ENST00000497089 NUP155O75694 1391 aa9.67□□□□□ -0.86
HOXA9-206ENST00000497089 KIAA1468Q9P260 1216 aa9.67□□□□□ -0.86
HOXA9-206ENST00000497089 RABGEF1Q9UJ41 708 aa9.67□□□□□ -0.86
HOXA9-206ENST00000497089 ZFYVE9O95405 1425 aa9.67□□□□□ -0.86
HOXA9-206ENST00000497089 NAIPQ13075 1403 aa9.67□□□□□ -0.86
HOXA9-206ENST00000497089 ITGAEP38570 1179 aa9.66□□□□□ -0.86
HOXA9-206ENST00000497089 ADGRD1Q6QNK2 874 aa9.66□□□□□ -0.86
HOXA9-206ENST00000497089 ERICH6Q7L0X2 663 aa9.66□□□□□ -0.86
HOXA9-206ENST00000497089 ADGRG1Q9Y653 693 aa9.66□□□□□ -0.86
HOXA9-206ENST00000497089 LRRC7Q96NW7 1537 aa9.66□□□□□ -0.86
HOXA9-206ENST00000497089 UBAP1LF5GYI3 381 aa9.65□□□□□ -0.86
HOXA9-206ENST00000497089 AMHR2Q16671 573 aa9.65□□□□□ -0.86
HOXA9-206ENST00000497089 ANKRD13DQ6ZTN6 518 aa9.65□□□□□ -0.86
HOXA9-206ENST00000497089 MYO5BQ9ULV0 1848 aa9.65□□□□□ -0.86
HOXA9-206ENST00000497089 ALKQ9UM73 1620 aa9.65□□□□□ -0.87
HOXA9-206ENST00000497089 NBPF26B4DH59 902 aa9.64□□□□□ -0.87
HOXA9-206ENST00000497089 FAM161AQ3B820 660 aa9.64□□□□□ -0.87
HOXA9-206ENST00000497089 IL27Q8NEV9 243 aa9.64□□□□□ -0.87
HOXA9-206ENST00000497089 HFM1A2PYH4 1435 aa9.64□□□□□ -0.87
HOXA9-206ENST00000497089 BHMG1C9JSJ3 638 aaPredicted RBP9.63□□□□□ -0.87
HOXA9-206ENST00000497089 C3orf80F5H4A9 247 aa9.63□□□□□ -0.87
HOXA9-206ENST00000497089 OATP04181 439 aa9.63□□□□□ -0.87
HOXA9-206ENST00000497089 NUDT18Q6ZVK8 323 aa9.63□□□□□ -0.87
HOXA9-206ENST00000497089 TATDN2Q93075 761 aa9.63□□□□□ -0.87
HOXA9-206ENST00000497089 SPHKAPQ2M3C7 1700 aa9.63□□□□□ -0.87
HOXA9-206ENST00000497089 TOM1O60784 492 aa9.63□□□□□ -0.87
HOXA9-206ENST00000497089 HDGFP51858 240 aaKnown RBP9.63□□□□□ -0.87
HOXA9-206ENST00000497089 TTLL12Q14166 644 aaPredicted RBP9.63□□□□□ -0.87
HOXA9-206ENST00000497089 EYA1Q99502 592 aa9.63□□□□□ -0.87
HOXA9-206ENST00000497089 PNMA3Q9UL41 463 aa9.63□□□□□ -0.87
HOXA9-206ENST00000497089 RIMS2Q9UQ26 1411 aa9.62□□□□□ -0.87
HOXA9-206ENST00000497089 NWD1Q149M9 1564 aa9.62□□□□□ -0.87
HOXA9-206ENST00000497089 PLEKHG1Q9ULL1 1385 aa9.62□□□□□ -0.87
HOXA9-206ENST00000497089 XIRP1Q702N8 1843 aaKnown RBP9.62□□□□□ -0.87
HOXA9-206ENST00000497089 HRO43593 1189 aa9.62□□□□□ -0.87
HOXA9-206ENST00000497089 METTL3Q86U44 580 aaKnown RBP9.62□□□□□ -0.87
HOXA9-206ENST00000497089 RBM46Q8TBY0 533 aaKnown RBP9.62□□□□□ -0.87
HOXA9-206ENST00000497089 NKTRP30414 1462 aaKnown RBP9.61□□□□□ -0.87
HOXA9-206ENST00000497089 KCNA6P17658 529 aa9.61□□□□□ -0.87
HOXA9-206ENST00000497089 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.61□□□□□ -0.87
HOXA9-206ENST00000497089 PXYLP1Q8TE99 480 aa9.61□□□□□ -0.87
HOXA9-206ENST00000497089 NBPF3Q9H094 633 aa9.61□□□□□ -0.87
HOXA9-206ENST00000497089 BCL11AQ9H165 835 aa9.61□□□□□ -0.87
HOXA9-206ENST00000497089 CHD2O14647 1828 aaKnown RBP9.6□□□□□ -0.87
HOXA9-206ENST00000497089 TRPM2O94759 1503 aa9.6□□□□□ -0.87
HOXA9-206ENST00000497089 SMAPO00193 183 aa9.6□□□□□ -0.87
HOXA9-206ENST00000497089 PHOX2BQ99453 314 aa9.6□□□□□ -0.87
HOXA9-206ENST00000497089 DIP2AQ14689 1571 aa9.59□□□□□ -0.87
HOXA9-206ENST00000497089 PARP9Q8IXQ6 854 aa9.59□□□□□ -0.87
HOXA9-206ENST00000497089 DDRGK1Q96HY6 314 aa9.59□□□□□ -0.87
HOXA9-206ENST00000497089 SLC26A8Q96RN1 970 aa9.59□□□□□ -0.87
HOXA9-206ENST00000497089 SEPT9Q9UHD8 586 aaPredicted RBP9.59□□□□□ -0.87
HOXA9-206ENST00000497089 TBX22Q9Y458 520 aa9.59□□□□□ -0.87
HOXA9-206ENST00000497089 ADAMTS13Q76LX8 1427 aa9.58□□□□□ -0.88
HOXA9-206ENST00000497089 LAPTM4BQ86VI4 370 aa9.58□□□□□ -0.88
HOXA9-206ENST00000497089 PIK3R4Q99570 1358 aa9.58□□□□□ -0.88
HOXA9-206ENST00000497089 TMEM94Q12767 1356 aa9.57□□□□□ -0.88
HOXA9-206ENST00000497089 MMRN1Q13201 1228 aa9.57□□□□□ -0.88
HOXA9-206ENST00000497089 NEUROD1Q13562 356 aa9.57□□□□□ -0.88
HOXA9-206ENST00000497089 FAM98CQ17RN3 349 aaKnown RBP9.57□□□□□ -0.88
HOXA9-206ENST00000497089 MRPL50Q8N5N7 158 aaKnown RBP9.57□□□□□ -0.88
HOXA9-206ENST00000497089 FAM117AQ9C073 453 aa9.57□□□□□ -0.88
HOXA9-206ENST00000497089 CLTCL1P53675 1640 aa9.57□□□□□ -0.88
HOXA9-206ENST00000497089 SETBP1Q9Y6X0 1596 aa9.56□□□□□ -0.88
HOXA9-206ENST00000497089 RCCD1A6NED2 376 aa9.56□□□□□ -0.88
HOXA9-206ENST00000497089 PPP1R15AO75807 674 aaPredicted RBP9.56□□□□□ -0.88
HOXA9-206ENST00000497089 HSPA1LP34931 641 aa9.56□□□□□ -0.88
HOXA9-206ENST00000497089 CLCN1P35523 988 aa9.56□□□□□ -0.88
HOXA9-206ENST00000497089 TIMELESSQ9UNS1 1208 aa9.56□□□□□ -0.88
HOXA9-206ENST00000497089 NCOA3Q9Y6Q9 1424 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms