RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 DDX10Q13206 875 aaKnown RBP6.85□□□□□ -1.31
USF3-204ENST00000496826 PDILTQ8N807 584 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 C16orf45Q96MC5 204 aaPredicted RBP6.85□□□□□ -1.31
USF3-204ENST00000496826 PSMD1Q99460 953 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 MRE11P49959 708 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 SNX16P57768 344 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 RPUSD2Q8IZ73 545 aaKnown RBP6.85□□□□□ -1.31
USF3-204ENST00000496826 ATP2A3Q93084 1043 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 NOP58Q9Y2X3 529 aaKnown RBP6.85□□□□□ -1.31
USF3-204ENST00000496826 FAM8A1Q9UBU6 413 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 DAPK3O43293 454 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 CDK5RAP3Q96JB5 506 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 CCDC77Q9BR77 488 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 PRPF40AO75400 957 aaKnown RBP6.85□□□□□ -1.31
USF3-204ENST00000496826 MICALL1Q8N3F8 863 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 MPHOSPH6Q99547 160 aaKnown RBP6.85□□□□□ -1.31
USF3-204ENST00000496826 ERCC6LQ2NKX8 1250 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 LGSNQ5TDP6 509 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 CACNA2D4Q7Z3S7 1137 aa6.85□□□□□ -1.31
USF3-204ENST00000496826 MAP7D1Q3KQU3 841 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 CCDC181Q5TID7 509 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 CERS3Q8IU89 383 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 PDE3BQ13370 1112 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 DDX27Q96GQ7 796 aaKnown RBP6.84□□□□□ -1.31
USF3-204ENST00000496826 PAXIP1Q6ZW49 1069 aaPredicted RBP6.84□□□□□ -1.31
USF3-204ENST00000496826 TOMM22Q9NS69 142 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 SMTNL1A8MU46 457 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 SMC3Q9UQE7 1217 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 FAM177BA6PVY3 158 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 RAPGEF3O95398 923 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 BZW1Q7L1Q6 419 aaKnown RBP6.84□□□□□ -1.31
USF3-204ENST00000496826 CLUAP1Q96AJ1 413 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 HIRIP3Q9BW71 556 aaPredicted RBP6.84□□□□□ -1.31
USF3-204ENST00000496826 FBLN2P98095 1184 aa6.84□□□□□ -1.31
USF3-204ENST00000496826 CCDC117Q8IWD4 279 aaPredicted RBP6.84□□□□□ -1.32
USF3-204ENST00000496826 FAM9BQ8IZU0 186 aa6.84□□□□□ -1.32
USF3-204ENST00000496826 CFDP1Q9UEE9 299 aaPredicted RBP6.84□□□□□ -1.32
USF3-204ENST00000496826 MSANTD4Q8NCY6 345 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 PAWRQ96IZ0 340 aaKnown RBP6.83□□□□□ -1.32
USF3-204ENST00000496826 MAP3K21Q5TCX8 1036 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 CEP128Q6ZU80 1094 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 VPS36Q86VN1 386 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 CUL5Q93034 780 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 HVCN1Q96D96 273 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 CPLX1O14810 134 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 COPG1Q9Y678 874 aaKnown RBP6.83□□□□□ -1.32
USF3-204ENST00000496826 MTUS2Q5JR59 1369 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 EFCAB14O75071 495 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 TNIP1Q15025 636 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 CCDC94Q9BW85 323 aaPredicted RBP6.83□□□□□ -1.32
USF3-204ENST00000496826 UBXN4Q92575 508 aa6.83□□□□□ -1.32
USF3-204ENST00000496826 SPATS2LQ9NUQ6 558 aaKnown RBP6.83□□□□□ -1.32
USF3-204ENST00000496826 SART3Q15020 963 aaKnown RBP6.82□□□□□ -1.32
USF3-204ENST00000496826 ANGPT1Q15389 498 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 INTS3Q68E01 1043 aaKnown RBP6.82□□□□□ -1.32
USF3-204ENST00000496826 RANBP1P43487 201 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 TTLL5Q6EMB2 1281 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 CFAP157Q5JU67 520 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 RSPH4AQ5TD94 716 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 VPS37DQ86XT2 251 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 POGKQ9P215 609 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 ATP6V0A1Q93050 837 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 CARD11Q9BXL7 1154 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 SH3BP5O60239 455 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 IMMTQ16891 758 aaKnown RBP6.82□□□□□ -1.32
USF3-204ENST00000496826 CEP120Q8N960 986 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 DTNBO60941 627 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 TPD52P55327 224 aaPredicted RBP6.82□□□□□ -1.32
USF3-204ENST00000496826 CCDC144CPQ8IYA2 1237 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 PLVAPQ9BX97 442 aa6.82□□□□□ -1.32
USF3-204ENST00000496826 BMP2KQ9NSY1 1161 aaPredicted RBP6.82□□□□□ -1.32
USF3-204ENST00000496826 NOL7Q9UMY1 257 aaKnown RBP6.82□□□□□ -1.32
USF3-204ENST00000496826 UQCRHP07919 91 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 CCDC129Q6ZRS4 1044 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 SLKQ9H2G2 1235 aaPredicted RBP6.81□□□□□ -1.32
USF3-204ENST00000496826 CCDC69A6NI79 296 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 ZKSCAN1P17029 563 aaPredicted RBP6.81□□□□□ -1.32
USF3-204ENST00000496826 LNPKQ9C0E8 428 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 NDC80O14777 642 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 TBCAO75347 108 aaKnown RBP6.81□□□□□ -1.32
USF3-204ENST00000496826 PDCLQ13371 301 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 FSD2A1L4K1 749 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 MACROD2A1Z1Q3 448 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 MAP3K11Q16584 847 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 CETN3O15182 167 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 PYGLP06737 847 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 RAP1GDS1P52306 607 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 JMYQ8N9B5 988 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 FMNL2Q96PY5 1086 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 STMN4Q9H169 189 aaPredicted RBP6.81□□□□□ -1.32
USF3-204ENST00000496826 ALDH3A1P30838 453 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 CCDC38Q502W7 563 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 AFAP1L2Q8N4X5 818 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 VCX3AQ9NNX9 186 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 ANGPTL3Q9Y5C1 460 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 GOLGA6CA6NDK9 693 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 GOLGA6BA6NDN3 693 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 CASQ2O14958 399 aaPredicted RBP6.81□□□□□ -1.32
USF3-204ENST00000496826 GOLGA6DP0CG33 693 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 LMNB2Q03252 620 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms