RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 BANK1Q8NDB2 785 aa8.6□□□□□ -1.03
PTCD3-219ENST00000494323 USB1Q9BQ65 265 aaKnown RBP8.6□□□□□ -1.03
PTCD3-219ENST00000494323 PCDHGC3Q9UN70 934 aa8.6□□□□□ -1.03
PTCD3-219ENST00000494323 KIF21BO75037 1637 aa8.6□□□□□ -1.03
PTCD3-219ENST00000494323 ARAP3Q8WWN8 1544 aa8.59□□□□□ -1.03
PTCD3-219ENST00000494323 SPDYE5A6NIY4 337 aa8.59□□□□□ -1.03
PTCD3-219ENST00000494323 HRCP23327 699 aa8.59□□□□□ -1.03
PTCD3-219ENST00000494323 PLEKHD1A6NEE1 506 aa8.58□□□□□ -1.04
PTCD3-219ENST00000494323 MTMR2Q13614 643 aa8.58□□□□□ -1.04
PTCD3-219ENST00000494323 CABLES1Q8TDN4 633 aa8.58□□□□□ -1.04
PTCD3-219ENST00000494323 ZMYND15Q9H091 742 aa8.58□□□□□ -1.04
PTCD3-219ENST00000494323 RTL5Q5HYW3 569 aaPredicted RBP8.57□□□□□ -1.04
PTCD3-219ENST00000494323 PHLDB1Q86UU1 1377 aa8.57□□□□□ -1.04
PTCD3-219ENST00000494323 C6orf229H3BNL8 230 aa8.56□□□□□ -1.04
PTCD3-219ENST00000494323 RPIAP49247 311 aa8.56□□□□□ -1.04
PTCD3-219ENST00000494323 MMP16P51512 607 aa8.56□□□□□ -1.04
PTCD3-219ENST00000494323 MCM6Q14566 821 aa8.56□□□□□ -1.04
PTCD3-219ENST00000494323 FBXO31Q5XUX0 539 aaPredicted RBP8.56□□□□□ -1.04
PTCD3-219ENST00000494323 FBXO41Q8TF61 875 aa8.56□□□□□ -1.04
PTCD3-219ENST00000494323 PTPRMP28827 1452 aa8.56□□□□□ -1.04
PTCD3-219ENST00000494323 ZBTB24O43167 697 aaPredicted RBP8.55□□□□□ -1.04
PTCD3-219ENST00000494323 PRR20EP86478 221 aa8.55□□□□□ -1.04
PTCD3-219ENST00000494323 PRR20CP86479 221 aa8.55□□□□□ -1.04
PTCD3-219ENST00000494323 PRR20DP86480 221 aa8.55□□□□□ -1.04
PTCD3-219ENST00000494323 PRR20BP86481 221 aa8.55□□□□□ -1.04
PTCD3-219ENST00000494323 PRR20AP86496 221 aa8.55□□□□□ -1.04
PTCD3-219ENST00000494323 TRIM67Q6ZTA4 783 aa8.55□□□□□ -1.04
PTCD3-219ENST00000494323 DXOO77932 396 aaKnown RBP8.54□□□□□ -1.04
PTCD3-219ENST00000494323 HSPA2P54652 639 aa8.54□□□□□ -1.04
PTCD3-219ENST00000494323 MLECQ14165 292 aa8.54□□□□□ -1.04
PTCD3-219ENST00000494323 RETREG3Q86VR2 466 aa8.54□□□□□ -1.04
PTCD3-219ENST00000494323 ABCA9Q8IUA7 1624 aa8.54□□□□□ -1.04
PTCD3-219ENST00000494323 FHOD3Q2V2M9 1422 aa8.54□□□□□ -1.04
PTCD3-219ENST00000494323 TNFRSF10AO00220 468 aa8.53□□□□□ -1.04
PTCD3-219ENST00000494323 SOCS7O14512 581 aa8.53□□□□□ -1.04
PTCD3-219ENST00000494323 AP1G2O75843 785 aa8.53□□□□□ -1.04
PTCD3-219ENST00000494323 CD2BP2O95400 341 aaKnown RBP8.53□□□□□ -1.04
PTCD3-219ENST00000494323 TRAF7Q6Q0C0 670 aa8.53□□□□□ -1.04
PTCD3-219ENST00000494323 HELBQ8NG08 1087 aaPredicted RBP8.53□□□□□ -1.04
PTCD3-219ENST00000494323 SYMPKQ92797 1274 aaKnown RBP8.53□□□□□ -1.04
PTCD3-219ENST00000494323 RAPGEF6Q8TEU7 1601 aa8.53□□□□□ -1.04
PTCD3-219ENST00000494323 ADAMTSL3P82987 1691 aa8.53□□□□□ -1.04
PTCD3-219ENST00000494323 NUP153P49790 1475 aaKnown RBP8.52□□□□□ -1.05
PTCD3-219ENST00000494323 NEO1Q92859 1461 aa8.52□□□□□ -1.05
PTCD3-219ENST00000494323 APBB1O00213 710 aa8.52□□□□□ -1.05
PTCD3-219ENST00000494323 GDF9O60383 454 aa8.52□□□□□ -1.05
PTCD3-219ENST00000494323 UBTFP17480 764 aaKnown RBP8.52□□□□□ -1.05
PTCD3-219ENST00000494323 SAMD9Q5K651 1589 aa8.52□□□□□ -1.05
PTCD3-219ENST00000494323 LCE2BO14633 110 aa8.51□□□□□ -1.05
PTCD3-219ENST00000494323 FOXC1Q12948 553 aa8.51□□□□□ -1.05
PTCD3-219ENST00000494323 HOMEZQ8IX15 550 aa8.51□□□□□ -1.05
PTCD3-219ENST00000494323 CCDC24Q8N4L8 307 aa8.51□□□□□ -1.05
PTCD3-219ENST00000494323 PRR7Q8TB68 274 aa8.51□□□□□ -1.05
PTCD3-219ENST00000494323 AKNAQ7Z591 1439 aa8.51□□□□□ -1.05
PTCD3-219ENST00000494323 CFAP99D6REC4 459 aa8.5□□□□□ -1.05
PTCD3-219ENST00000494323 USP17L8P0C7I0 530 aa8.5□□□□□ -1.05
PTCD3-219ENST00000494323 JUNDP17535 347 aa8.5□□□□□ -1.05
PTCD3-219ENST00000494323 PKDCCQ504Y2 493 aa8.5□□□□□ -1.05
PTCD3-219ENST00000494323 SNRKQ9NRH2 765 aa8.5□□□□□ -1.05
PTCD3-219ENST00000494323 DENND4BO75064 1496 aaPredicted RBP8.5□□□□□ -1.05
PTCD3-219ENST00000494323 BCORL1Q5H9F3 1711 aa8.49□□□□□ -1.05
PTCD3-219ENST00000494323 DESI1Q6ICB0 168 aa8.49□□□□□ -1.05
PTCD3-219ENST00000494323 TSC1Q92574 1164 aa8.49□□□□□ -1.05
PTCD3-219ENST00000494323 C1orf115Q9H7X2 142 aa8.49□□□□□ -1.05
PTCD3-219ENST00000494323 MADDQ8WXG6 1647 aa8.49□□□□□ -1.05
PTCD3-219ENST00000494323 FRMPD1Q5SYB0 1578 aa8.48□□□□□ -1.05
PTCD3-219ENST00000494323 FAM187AA6NFU0 413 aa8.48□□□□□ -1.05
PTCD3-219ENST00000494323 A6NJR5 290 aa8.48□□□□□ -1.05
PTCD3-219ENST00000494323 RAD21O60216 631 aa8.48□□□□□ -1.05
PTCD3-219ENST00000494323 CEBPAP49715 358 aaPredicted RBP8.48□□□□□ -1.05
PTCD3-219ENST00000494323 TRIM32Q13049 653 aa8.48□□□□□ -1.05
PTCD3-219ENST00000494323 PRM3Q9NNZ6 103 aa8.48□□□□□ -1.05
PTCD3-219ENST00000494323 PKD2L1Q9P0L9 805 aa8.48□□□□□ -1.05
PTCD3-219ENST00000494323 FANCAO15360 1455 aa8.48□□□□□ -1.05
PTCD3-219ENST00000494323 YEATS2Q9ULM3 1422 aa8.47□□□□□ -1.05
PTCD3-219ENST00000494323 CTDSPL2Q05D32 466 aa8.47□□□□□ -1.05
PTCD3-219ENST00000494323 MTMR14Q8NCE2 650 aa8.47□□□□□ -1.05
PTCD3-219ENST00000494323 NUDT12Q9BQG2 462 aa8.47□□□□□ -1.05
PTCD3-219ENST00000494323 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.47□□□□□ -1.05
PTCD3-219ENST00000494323 RIMS1Q86UR5 1692 aaKnown RBP8.46□□□□□ -1.05
PTCD3-219ENST00000494323 SCAPERQ9BY12 1400 aa8.46□□□□□ -1.05
PTCD3-219ENST00000494323 LMTK3Q96Q04 1460 aa8.46□□□□□ -1.05
PTCD3-219ENST00000494323 DGAT1O75907 488 aa8.46□□□□□ -1.06
PTCD3-219ENST00000494323 AFAP1Q8N556 730 aa8.46□□□□□ -1.06
PTCD3-219ENST00000494323 PCF11O94913 1555 aaKnown RBP8.45□□□□□ -1.06
PTCD3-219ENST00000494323 EFCAB2Q5VUJ9 269 aa8.45□□□□□ -1.06
PTCD3-219ENST00000494323 RICTORQ6R327 1708 aa8.45□□□□□ -1.06
PTCD3-219ENST00000494323 EEA1Q15075 1411 aa8.45□□□□□ -1.06
PTCD3-219ENST00000494323 POGZQ7Z3K3 1410 aa8.45□□□□□ -1.06
PTCD3-219ENST00000494323 CDK13Q14004 1512 aaKnown RBP8.44□□□□□ -1.06
PTCD3-219ENST00000494323 CYP4X1Q8N118 509 aa8.44□□□□□ -1.06
PTCD3-219ENST00000494323 CLUAP1Q96AJ1 413 aa8.44□□□□□ -1.06
PTCD3-219ENST00000494323 PLCH2O75038 1416 aa8.44□□□□□ -1.06
PTCD3-219ENST00000494323 TTC37Q6PGP7 1564 aa8.44□□□□□ -1.06
PTCD3-219ENST00000494323 CCNYL3P0C7X3 344 aa8.43□□□□□ -1.06
PTCD3-219ENST00000494323 LYPD8Q6UX82 237 aa8.43□□□□□ -1.06
PTCD3-219ENST00000494323 CDK11AQ9UQ88 783 aaPredicted RBP8.43□□□□□ -1.06
PTCD3-219ENST00000494323 COG6Q9Y2V7 657 aa8.43□□□□□ -1.06
PTCD3-219ENST00000494323 SIGLEC1Q9BZZ2 1709 aa8.43□□□□□ -1.06
PTCD3-219ENST00000494323 WNT7AO00755 349 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms