RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 CHRNA2Q15822 529 aa15.15■□□□□ 0.02
COL6A3-214ENST00000493608 VPS72Q15906 364 aa15.15■□□□□ 0.02
COL6A3-214ENST00000493608 PRDM11Q9NQV5 511 aa15.15■□□□□ 0.02
COL6A3-214ENST00000493608 COL14A1Q05707 1796 aaKnown RBP15.13■□□□□ 0.01
COL6A3-214ENST00000493608 BRWD3Q6RI45 1802 aa15.13■□□□□ 0.01
COL6A3-214ENST00000493608 KIAA0232Q92628 1395 aa15.12■□□□□ 0.01
COL6A3-214ENST00000493608 VASPP50552 380 aaPredicted RBP15.12■□□□□ 0.01
COL6A3-214ENST00000493608 SEPT12Q8IYM1 358 aa15.12■□□□□ 0.01
COL6A3-214ENST00000493608 PHRF1Q9P1Y6 1649 aaKnown RBP15.12■□□□□ 0.01
COL6A3-214ENST00000493608 NLRP13Q86W25 1043 aa15.11■□□□□ 0.01
COL6A3-214ENST00000493608 NRAPQ86VF7 1730 aa15.11■□□□□ 0.01
COL6A3-214ENST00000493608 ATAD2Q6PL18 1390 aa15.11■□□□□ 0.01
COL6A3-214ENST00000493608 A0A0G2JS52 829 aa15.1■□□□□ 0.01
COL6A3-214ENST00000493608 NLRP6P59044 892 aa15.1■□□□□ 0.01
COL6A3-214ENST00000493608 MYT1Q01538 1121 aa15.1■□□□□ 0.01
COL6A3-214ENST00000493608 FAM98CQ17RN3 349 aaKnown RBP15.1■□□□□ 0.01
COL6A3-214ENST00000493608 ASTLQ6HA08 431 aaPredicted RBP15.1■□□□□ 0.01
COL6A3-214ENST00000493608 PELP1Q8IZL8 1130 aaKnown RBP15.1■□□□□ 0.01
COL6A3-214ENST00000493608 STRN4Q9NRL3 753 aa15.1■□□□□ 0.01
COL6A3-214ENST00000493608 USP6P35125 1406 aa15.09■□□□□ 0.01
COL6A3-214ENST00000493608 ZBTB7CA1YPR0 619 aa15.09■□□□□ 0.01
COL6A3-214ENST00000493608 MAP3K13O43283 966 aa15.09■□□□□ 0.01
COL6A3-214ENST00000493608 GCP02774 474 aa15.08■□□□□ 0
COL6A3-214ENST00000493608 ST20-MTHFSA0A0A6YYL1 179 aa15.07■□□□□ 0
COL6A3-214ENST00000493608 ONECUT3O60422 494 aaPredicted RBP15.07■□□□□ 0
COL6A3-214ENST00000493608 TMC1Q8TDI8 760 aa15.07■□□□□ 0
COL6A3-214ENST00000493608 USP19O94966 1318 aa15.07■□□□□ 0
COL6A3-214ENST00000493608 AKAP12Q02952 1782 aa15.06■□□□□ 0
COL6A3-214ENST00000493608 ATMINO43313 823 aaPredicted RBP15.06■□□□□ 0
COL6A3-214ENST00000493608 EVA1CP58658 441 aa15.06■□□□□ 0
COL6A3-214ENST00000493608 SPATA31A5Q5VU36 1347 aa15.06■□□□□ 0
COL6A3-214ENST00000493608 TTC21BQ7Z4L5 1316 aa15.06■□□□□ 0
COL6A3-214ENST00000493608 SPATA31A7Q8IWB4 1347 aa15.06■□□□□ 0
COL6A3-214ENST00000493608 NRKQ7Z2Y5 1582 aa15.06■□□□□ 0
COL6A3-214ENST00000493608 SOX12O15370 315 aa15.05■□□□□ -0
COL6A3-214ENST00000493608 KRT27Q7Z3Y8 459 aa15.05■□□□□ -0
COL6A3-214ENST00000493608 SLC12A5Q9H2X9 1139 aa15.05■□□□□ -0
COL6A3-214ENST00000493608 USP35Q9P2H5 1018 aa15.05■□□□□ -0
COL6A3-214ENST00000493608 BRD4O60885 1362 aaPredicted RBP15.05■□□□□ -0
COL6A3-214ENST00000493608 SBNO2Q9Y2G9 1366 aa15.05■□□□□ -0
COL6A3-214ENST00000493608 SSH2Q76I76 1423 aa15.05■□□□□ -0
COL6A3-214ENST00000493608 PIK3C2AO00443 1686 aa15.04■□□□□ -0
COL6A3-214ENST00000493608 KTN1Q86UP2 1357 aaKnown RBP15.04■□□□□ -0
COL6A3-214ENST00000493608 FAM182BQ5T319 152 aa15.04■□□□□ -0
COL6A3-214ENST00000493608 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.04■□□□□ -0
COL6A3-214ENST00000493608 TRPC6Q9Y210 931 aa15.04■□□□□ -0
COL6A3-214ENST00000493608 EP400Q96L91 3159 aa15.04■□□□□ -0
COL6A3-214ENST00000493608 CAMTA1Q9Y6Y1 1673 aa15.03■□□□□ -0
COL6A3-214ENST00000493608 FAM212AQ96EL1 285 aa15.03■□□□□ -0
COL6A3-214ENST00000493608 CPSF1Q10570 1443 aaKnown RBP15.02■□□□□ -0
COL6A3-214ENST00000493608 CPDO75976 1380 aa15.02■□□□□ -0
COL6A3-214ENST00000493608 SPATA31A1Q5TZJ5 1347 aa15.02■□□□□ -0
COL6A3-214ENST00000493608 LARP1Q6PKG0 1096 aaKnown RBP15.02■□□□□ -0
COL6A3-214ENST00000493608 TESK2Q96S53 571 aa15.02■□□□□ -0
COL6A3-214ENST00000493608 TTC21AQ8NDW8 1320 aa15□□□□□ -0.01
COL6A3-214ENST00000493608 CD163L1Q9NR16 1453 aa15□□□□□ -0.01
COL6A3-214ENST00000493608 LMO7Q8WWI1 1683 aa15□□□□□ -0.01
COL6A3-214ENST00000493608 SLIT3O75094 1523 aa14.99□□□□□ -0.01
COL6A3-214ENST00000493608 HDGFL2Q7Z4V5 671 aaPredicted RBP14.99□□□□□ -0.01
COL6A3-214ENST00000493608 DEFB132Q7Z7B7 95 aa14.99□□□□□ -0.01
COL6A3-214ENST00000493608 NME9Q86XW9 330 aa14.99□□□□□ -0.01
COL6A3-214ENST00000493608 CCDC125Q86Z20 511 aa14.99□□□□□ -0.01
COL6A3-214ENST00000493608 SGIP1Q9BQI5 828 aa14.99□□□□□ -0.01
COL6A3-214ENST00000493608 MON2Q7Z3U7 1717 aa14.99□□□□□ -0.01
COL6A3-214ENST00000493608 RGPD5Q99666 1765 aa14.98□□□□□ -0.01
COL6A3-214ENST00000493608 CCER1Q8TC90 406 aaPredicted RBP14.98□□□□□ -0.01
COL6A3-214ENST00000493608 AXIN2Q9Y2T1 843 aa14.98□□□□□ -0.01
COL6A3-214ENST00000493608 USP47Q96K76 1375 aa14.98□□□□□ -0.01
COL6A3-214ENST00000493608 BMP2KQ9NSY1 1161 aaPredicted RBP14.97□□□□□ -0.01
COL6A3-214ENST00000493608 CLSPNQ9HAW4 1339 aa14.96□□□□□ -0.01
COL6A3-214ENST00000493608 COL18A1P39060 1754 aa14.96□□□□□ -0.01
COL6A3-214ENST00000493608 BLMP54132 1417 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-214ENST00000493608 ATN1P54259 1190 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-214ENST00000493608 SF3B2Q13435 895 aaKnown RBP14.96□□□□□ -0.01
COL6A3-214ENST00000493608 ARHGEF25Q86VW2 580 aa14.96□□□□□ -0.01
COL6A3-214ENST00000493608 KCNH5Q8NCM2 988 aa14.96□□□□□ -0.01
COL6A3-214ENST00000493608 PUS7Q96PZ0 661 aaKnown RBP14.96□□□□□ -0.01
COL6A3-214ENST00000493608 TERF2IPQ9NYB0 399 aa14.96□□□□□ -0.01
COL6A3-214ENST00000493608 THSD7AQ9UPZ6 1657 aa14.96□□□□□ -0.01
COL6A3-214ENST00000493608 A0A1W2PP64 1363 aa14.96□□□□□ -0.02
COL6A3-214ENST00000493608 AATKQ6ZMQ8 1374 aa14.96□□□□□ -0.02
COL6A3-214ENST00000493608 COL5A2P05997 1499 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-214ENST00000493608 POTEB2H3BUK9 544 aa14.95□□□□□ -0.02
COL6A3-214ENST00000493608 TCP11L2Q8N4U5 519 aa14.95□□□□□ -0.02
COL6A3-214ENST00000493608 TIMELESSQ9UNS1 1208 aa14.95□□□□□ -0.02
COL6A3-214ENST00000493608 TIE1P35590 1138 aa14.94□□□□□ -0.02
COL6A3-214ENST00000493608 TMF1P82094 1093 aa14.94□□□□□ -0.02
COL6A3-214ENST00000493608 BARGINQ6ZT62 677 aa14.94□□□□□ -0.02
COL6A3-214ENST00000493608 TOM1L2Q6ZVM7 507 aa14.94□□□□□ -0.02
COL6A3-214ENST00000493608 PCDHB13Q9Y5F0 798 aa14.94□□□□□ -0.02
COL6A3-214ENST00000493608 SLC24A1O60721 1099 aa14.93□□□□□ -0.02
COL6A3-214ENST00000493608 KLHL34Q8N239 644 aa14.93□□□□□ -0.02
COL6A3-214ENST00000493608 EDC4Q6P2E9 1401 aaKnown RBP14.92□□□□□ -0.02
COL6A3-214ENST00000493608 CSB-PGBD3P0DP91 1061 aa14.92□□□□□ -0.02
COL6A3-214ENST00000493608 PDE3BQ13370 1112 aa14.92□□□□□ -0.02
COL6A3-214ENST00000493608 USP31Q70CQ4 1352 aa14.92□□□□□ -0.02
COL6A3-214ENST00000493608 NFAT5O94916 1531 aa14.92□□□□□ -0.02
COL6A3-214ENST00000493608 CRB1P82279 1406 aa14.92□□□□□ -0.02
COL6A3-214ENST00000493608 DCAF8Q5TAQ9 597 aa14.91□□□□□ -0.02
COL6A3-214ENST00000493608 IFNLR1Q8IU57 520 aaPredicted RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms