RNA–Protein interactions for RNA: ENST00000493348.1

TM4SF1-204, Transcript of transmembrane 4 L six family member 1, humanhuman

TSL 2

Gene TM4SF1, Length 976 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-204ENST00000493348 SLIT2O94813 1529 aa11.09□□□□□ -0.63
TM4SF1-204ENST00000493348 OVOS2A0A0J9YW53 1432 aa11.09□□□□□ -0.63
TM4SF1-204ENST00000493348 OVOS2Q6IE36 1432 aa11.09□□□□□ -0.63
TM4SF1-204ENST00000493348 MORC1Q86VD1 984 aa11.08□□□□□ -0.64
TM4SF1-204ENST00000493348 CARD14Q9BXL6 1004 aa11.08□□□□□ -0.64
TM4SF1-204ENST00000493348 MAP2P11137 1827 aaKnown RBP11.07□□□□□ -0.64
TM4SF1-204ENST00000493348 AATKQ6ZMQ8 1374 aa11.07□□□□□ -0.64
TM4SF1-204ENST00000493348 CNGB1Q14028 1251 aaPredicted RBP11.07□□□□□ -0.64
TM4SF1-204ENST00000493348 POTEAQ6S8J7 498 aa11.07□□□□□ -0.64
TM4SF1-204ENST00000493348 RGPD5Q99666 1765 aa11.07□□□□□ -0.64
TM4SF1-204ENST00000493348 NFAT5O94916 1531 aa11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 PPM1GO15355 546 aaPredicted RBP11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 TNNT2P45379 298 aaPredicted RBP11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 VPS72Q15906 364 aa11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 TOM1L2Q6ZVM7 507 aa11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 ARHGEF25Q86VW2 580 aa11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 GJD4Q96KN9 370 aaPredicted RBP11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 RGS17Q9UGC6 210 aaPredicted RBP11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 SMG6Q86US8 1419 aaKnown RBP11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 NRAPQ86VF7 1730 aa11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 BCL9LQ86UU0 1499 aa11.06□□□□□ -0.64
TM4SF1-204ENST00000493348 ABCC6O95255 1503 aa11.05□□□□□ -0.64
TM4SF1-204ENST00000493348 ATRNO75882 1429 aa11.05□□□□□ -0.64
TM4SF1-204ENST00000493348 USP35Q9P2H5 1018 aa11.05□□□□□ -0.64
TM4SF1-204ENST00000493348 RRS1Q15050 365 aaKnown RBP11.04□□□□□ -0.64
TM4SF1-204ENST00000493348 CC2D1BQ5T0F9 858 aaKnown RBP11.04□□□□□ -0.64
TM4SF1-204ENST00000493348 RTL1A6NKG5 1358 aa11.03□□□□□ -0.64
TM4SF1-204ENST00000493348 BLMP54132 1417 aaPredicted RBP11.03□□□□□ -0.64
TM4SF1-204ENST00000493348 IP6K1Q92551 441 aa11.03□□□□□ -0.64
TM4SF1-204ENST00000493348 LTV1Q96GA3 475 aaPredicted RBP11.03□□□□□ -0.64
TM4SF1-204ENST00000493348 LMO7Q8WWI1 1683 aa11.03□□□□□ -0.64
TM4SF1-204ENST00000493348 MAP3K19Q56UN5 1328 aa11.03□□□□□ -0.64
TM4SF1-204ENST00000493348 CAMTA1Q9Y6Y1 1673 aa11.02□□□□□ -0.64
TM4SF1-204ENST00000493348 COL5A2P05997 1499 aaPredicted RBP11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 ZNF316A6NFI3 1004 aaPredicted RBP11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 KCNA4P22459 653 aa11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 DDX10Q13206 875 aaKnown RBP11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 LARP1Q6PKG0 1096 aaKnown RBP11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 ANKRD24Q8TF21 1146 aa11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 NLRP2Q9NX02 1062 aa11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 COL18A1P39060 1754 aa11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 WDR17Q8IZU2 1322 aa11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 FLT4P35916 1363 aa11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 KIF24Q5T7B8 1368 aa11.02□□□□□ -0.65
TM4SF1-204ENST00000493348 FAM208AQ9UK61 1670 aaKnown RBP11.01□□□□□ -0.65
TM4SF1-204ENST00000493348 CRB1P82279 1406 aa11.01□□□□□ -0.65
TM4SF1-204ENST00000493348 CDK12Q9NYV4 1490 aaPredicted RBP11.01□□□□□ -0.65
TM4SF1-204ENST00000493348 HOXC9P31274 260 aa11.01□□□□□ -0.65
TM4SF1-204ENST00000493348 FAM98CQ17RN3 349 aaKnown RBP11.01□□□□□ -0.65
TM4SF1-204ENST00000493348 TCP11L2Q8N4U5 519 aa11.01□□□□□ -0.65
TM4SF1-204ENST00000493348 THRAP3Q9Y2W1 955 aaKnown RBP11.01□□□□□ -0.65
TM4SF1-204ENST00000493348 SPATA31A5Q5VU36 1347 aa11.01□□□□□ -0.65
TM4SF1-204ENST00000493348 SPATA31A7Q8IWB4 1347 aa11.01□□□□□ -0.65
TM4SF1-204ENST00000493348 FBLN1P23142 703 aa11□□□□□ -0.65
TM4SF1-204ENST00000493348 AMER1Q5JTC6 1135 aaPredicted RBP11□□□□□ -0.65
TM4SF1-204ENST00000493348 AXIN2Q9Y2T1 843 aa11□□□□□ -0.65
TM4SF1-204ENST00000493348 SPATA31A1Q5TZJ5 1347 aa11□□□□□ -0.65
TM4SF1-204ENST00000493348 PER1O15534 1290 aaPredicted RBP10.99□□□□□ -0.65
TM4SF1-204ENST00000493348 SEPT12Q8IYM1 358 aa10.99□□□□□ -0.65
TM4SF1-204ENST00000493348 CDCA7Q9BWT1 371 aaPredicted RBP10.99□□□□□ -0.65
TM4SF1-204ENST00000493348 EMILIN1Q9Y6C2 1016 aa10.99□□□□□ -0.65
TM4SF1-204ENST00000493348 ERBB3P21860 1342 aa10.99□□□□□ -0.65
TM4SF1-204ENST00000493348 NPC1L1Q9UHC9 1359 aa10.99□□□□□ -0.65
TM4SF1-204ENST00000493348 GLI3P10071 1580 aa10.99□□□□□ -0.65
TM4SF1-204ENST00000493348 PDE3BQ13370 1112 aa10.98□□□□□ -0.65
TM4SF1-204ENST00000493348 NCBP3Q53F19 620 aaKnown RBP10.98□□□□□ -0.65
TM4SF1-204ENST00000493348 ILDR2Q71H61 639 aa10.98□□□□□ -0.65
TM4SF1-204ENST00000493348 CARD10Q9BWT7 1032 aa10.98□□□□□ -0.65
TM4SF1-204ENST00000493348 KAT6BQ8WYB5 2073 aa10.97□□□□□ -0.65
TM4SF1-204ENST00000493348 BARGINQ6ZT62 677 aa10.97□□□□□ -0.65
TM4SF1-204ENST00000493348 CFAP53Q96M91 514 aa10.97□□□□□ -0.65
TM4SF1-204ENST00000493348 POLKQ9UBT6 870 aa10.97□□□□□ -0.65
TM4SF1-204ENST00000493348 INSRP06213 1382 aa10.97□□□□□ -0.65
TM4SF1-204ENST00000493348 RGS12O14924 1447 aa10.97□□□□□ -0.65
TM4SF1-204ENST00000493348 BRWD3Q6RI45 1802 aa10.96□□□□□ -0.65
TM4SF1-204ENST00000493348 HSP90AB2PQ58FF8 381 aa10.96□□□□□ -0.65
TM4SF1-204ENST00000493348 KRT27Q7Z3Y8 459 aa10.96□□□□□ -0.65
TM4SF1-204ENST00000493348 WNK3Q9BYP7 1800 aa10.95□□□□□ -0.66
TM4SF1-204ENST00000493348 RGPD2P0DJD1 1756 aa10.95□□□□□ -0.66
TM4SF1-204ENST00000493348 IL2RBP14784 551 aa10.95□□□□□ -0.66
TM4SF1-204ENST00000493348 DDB1Q16531 1140 aa10.95□□□□□ -0.66
TM4SF1-204ENST00000493348 RAPGEF4Q8WZA2 1011 aa10.95□□□□□ -0.66
TM4SF1-204ENST00000493348 PEAK1Q9H792 1746 aa10.95□□□□□ -0.66
TM4SF1-204ENST00000493348 EXOC5O00471 708 aa10.94□□□□□ -0.66
TM4SF1-204ENST00000493348 ONECUT3O60422 494 aaPredicted RBP10.94□□□□□ -0.66
TM4SF1-204ENST00000493348 MTHFSP49914 203 aa10.94□□□□□ -0.66
TM4SF1-204ENST00000493348 SF3B2Q13435 895 aaKnown RBP10.94□□□□□ -0.66
TM4SF1-204ENST00000493348 PARP4Q9UKK3 1724 aaKnown RBP10.93□□□□□ -0.66
TM4SF1-204ENST00000493348 TATP17735 454 aaPredicted RBP10.93□□□□□ -0.66
TM4SF1-204ENST00000493348 RALBP1Q15311 655 aa10.93□□□□□ -0.66
TM4SF1-204ENST00000493348 DIAPH1O60610 1272 aaKnown RBP10.92□□□□□ -0.66
TM4SF1-204ENST00000493348 USHBP1Q8N6Y0 703 aa10.92□□□□□ -0.66
TM4SF1-204ENST00000493348 NUDCQ9Y266 331 aa10.92□□□□□ -0.66
TM4SF1-204ENST00000493348 THSD7AQ9UPZ6 1657 aa10.92□□□□□ -0.66
TM4SF1-204ENST00000493348 SOCS7O14512 581 aa10.91□□□□□ -0.66
TM4SF1-204ENST00000493348 EIF4A2Q14240 407 aaKnown RBP10.91□□□□□ -0.66
TM4SF1-204ENST00000493348 NBPF6Q5VWK0 638 aa10.91□□□□□ -0.66
TM4SF1-204ENST00000493348 NBPF4Q96M43 638 aa10.91□□□□□ -0.66
TM4SF1-204ENST00000493348 U2SURPO15042 1029 aaKnown RBP10.9□□□□□ -0.66
TM4SF1-204ENST00000493348 ANP32CO43423 234 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms