RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 CD163L1Q9NR16 1453 aa18.4■□□□□ 0.54
MSH6-208ENST00000493177 LTN1O94822 1766 aa18.4■□□□□ 0.54
MSH6-208ENST00000493177 COL5A2P05997 1499 aaPredicted RBP18.39■□□□□ 0.54
MSH6-208ENST00000493177 LARP1Q6PKG0 1096 aaKnown RBP18.39■□□□□ 0.53
MSH6-208ENST00000493177 USP54Q70EL1 1684 aa18.38■□□□□ 0.53
MSH6-208ENST00000493177 NME9Q86XW9 330 aa18.38■□□□□ 0.53
MSH6-208ENST00000493177 AATKQ6ZMQ8 1374 aa18.38■□□□□ 0.53
MSH6-208ENST00000493177 ANKRD36BQ8N2N9 1353 aa18.38■□□□□ 0.53
MSH6-208ENST00000493177 BLMP54132 1417 aaPredicted RBP18.38■□□□□ 0.53
MSH6-208ENST00000493177 CSB-PGBD3P0DP91 1061 aa18.37■□□□□ 0.53
MSH6-208ENST00000493177 TOM1L2Q6ZVM7 507 aa18.37■□□□□ 0.53
MSH6-208ENST00000493177 ZRANB1Q9UGI0 708 aa18.37■□□□□ 0.53
MSH6-208ENST00000493177 COL18A1P39060 1754 aa18.37■□□□□ 0.53
MSH6-208ENST00000493177 RGPD1P0DJD0 1748 aa18.36■□□□□ 0.53
MSH6-208ENST00000493177 CRB1P82279 1406 aa18.36■□□□□ 0.53
MSH6-208ENST00000493177 TCP11L2Q8N4U5 519 aa18.36■□□□□ 0.53
MSH6-208ENST00000493177 USP31Q70CQ4 1352 aa18.35■□□□□ 0.53
MSH6-208ENST00000493177 NFAT5O94916 1531 aa18.34■□□□□ 0.53
MSH6-208ENST00000493177 PDE3BQ13370 1112 aa18.34■□□□□ 0.53
MSH6-208ENST00000493177 FAM182BQ5T319 152 aa18.34■□□□□ 0.53
MSH6-208ENST00000493177 ARHGEF25Q86VW2 580 aa18.34■□□□□ 0.53
MSH6-208ENST00000493177 THRAP3Q9Y2W1 955 aaKnown RBP18.34■□□□□ 0.53
MSH6-208ENST00000493177 KNSTRNQ9Y448 316 aa18.34■□□□□ 0.53
MSH6-208ENST00000493177 WNK3Q9BYP7 1800 aa18.34■□□□□ 0.53
MSH6-208ENST00000493177 KIF20BQ96Q89 1820 aa18.33■□□□□ 0.53
MSH6-208ENST00000493177 CNGB1Q14028 1251 aaPredicted RBP18.33■□□□□ 0.52
MSH6-208ENST00000493177 BARGINQ6ZT62 677 aa18.33■□□□□ 0.52
MSH6-208ENST00000493177 NSD3Q9BZ95 1437 aa18.32■□□□□ 0.52
MSH6-208ENST00000493177 PARP4Q9UKK3 1724 aaKnown RBP18.32■□□□□ 0.52
MSH6-208ENST00000493177 DIEXFQ68CQ4 756 aaKnown RBP18.32■□□□□ 0.52
MSH6-208ENST00000493177 COG3Q96JB2 828 aa18.32■□□□□ 0.52
MSH6-208ENST00000493177 CARD14Q9BXL6 1004 aa18.32■□□□□ 0.52
MSH6-208ENST00000493177 WDR17Q8IZU2 1322 aa18.31■□□□□ 0.52
MSH6-208ENST00000493177 ABCC6O95255 1503 aa18.31■□□□□ 0.52
MSH6-208ENST00000493177 BAG6P46379 1132 aa18.3■□□□□ 0.52
MSH6-208ENST00000493177 AXIN2Q9Y2T1 843 aa18.3■□□□□ 0.52
MSH6-208ENST00000493177 DEFB132Q7Z7B7 95 aa18.29■□□□□ 0.52
MSH6-208ENST00000493177 OVOS2A0A0J9YW53 1432 aa18.29■□□□□ 0.52
MSH6-208ENST00000493177 OVOS2Q6IE36 1432 aa18.29■□□□□ 0.52
MSH6-208ENST00000493177 PER1O15534 1290 aaPredicted RBP18.28■□□□□ 0.52
MSH6-208ENST00000493177 FAM196AQ6ZSG2 479 aa18.28■□□□□ 0.52
MSH6-208ENST00000493177 LRRC37A3O60309 1634 aa18.27■□□□□ 0.52
MSH6-208ENST00000493177 TNS1Q9HBL0 1735 aaKnown RBP18.26■□□□□ 0.51
MSH6-208ENST00000493177 CGNL1Q0VF96 1302 aa18.26■□□□□ 0.51
MSH6-208ENST00000493177 DDB1Q16531 1140 aa18.26■□□□□ 0.51
MSH6-208ENST00000493177 CC2D1BQ5T0F9 858 aaKnown RBP18.25■□□□□ 0.51
MSH6-208ENST00000493177 ANP32CO43423 234 aa18.24■□□□□ 0.51
MSH6-208ENST00000493177 AMPHP49418 695 aa18.24■□□□□ 0.51
MSH6-208ENST00000493177 CDCA7Q9BWT1 371 aaPredicted RBP18.24■□□□□ 0.51
MSH6-208ENST00000493177 CARD10Q9BWT7 1032 aa18.24■□□□□ 0.51
MSH6-208ENST00000493177 GGNBP2Q9H3C7 697 aa18.24■□□□□ 0.51
MSH6-208ENST00000493177 NLRP2Q9NX02 1062 aa18.24■□□□□ 0.51
MSH6-208ENST00000493177 FAM208AQ9UK61 1670 aaKnown RBP18.24■□□□□ 0.51
MSH6-208ENST00000493177 TRIM37O94972 964 aa18.23■□□□□ 0.51
MSH6-208ENST00000493177 ANKRD24Q8TF21 1146 aa18.23■□□□□ 0.51
MSH6-208ENST00000493177 AMER1Q5JTC6 1135 aaPredicted RBP18.22■□□□□ 0.51
MSH6-208ENST00000493177 LTV1Q96GA3 475 aaPredicted RBP18.22■□□□□ 0.51
MSH6-208ENST00000493177 OVOS2A0A0G2JMS6 1433 aa18.22■□□□□ 0.51
MSH6-208ENST00000493177 ERBB3P21860 1342 aa18.22■□□□□ 0.51
MSH6-208ENST00000493177 FYB1O15117 783 aa18.2■□□□□ 0.5
MSH6-208ENST00000493177 EN1Q05925 392 aaPredicted RBP18.2■□□□□ 0.5
MSH6-208ENST00000493177 NSD2O96028 1365 aa18.19■□□□□ 0.5
MSH6-208ENST00000493177 SBF2Q86WG5 1849 aa18.19■□□□□ 0.5
MSH6-208ENST00000493177 APBA3O96018 575 aa18.19■□□□□ 0.5
MSH6-208ENST00000493177 MORC1Q86VD1 984 aa18.19■□□□□ 0.5
MSH6-208ENST00000493177 IP6K1Q92551 441 aa18.19■□□□□ 0.5
MSH6-208ENST00000493177 EP400Q96L91 3159 aa18.19■□□□□ 0.5
MSH6-208ENST00000493177 NPC1L1Q9UHC9 1359 aa18.18■□□□□ 0.5
MSH6-208ENST00000493177 EXOC5O00471 708 aa18.18■□□□□ 0.5
MSH6-208ENST00000493177 MAP3K19Q56UN5 1328 aa18.18■□□□□ 0.5
MSH6-208ENST00000493177 RGPD2P0DJD1 1756 aa18.17■□□□□ 0.5
MSH6-208ENST00000493177 FBLN1P23142 703 aa18.17■□□□□ 0.5
MSH6-208ENST00000493177 SMG6Q86US8 1419 aaKnown RBP18.16■□□□□ 0.5
MSH6-208ENST00000493177 PEAK1Q9H792 1746 aa18.16■□□□□ 0.5
MSH6-208ENST00000493177 IL2RBP14784 551 aa18.16■□□□□ 0.5
MSH6-208ENST00000493177 HOXC9P31274 260 aa18.16■□□□□ 0.5
MSH6-208ENST00000493177 RRS1Q15050 365 aaKnown RBP18.16■□□□□ 0.5
MSH6-208ENST00000493177 KAT6BQ8WYB5 2073 aa18.16■□□□□ 0.5
MSH6-208ENST00000493177 RTL1A6NKG5 1358 aa18.16■□□□□ 0.5
MSH6-208ENST00000493177 TNNT2P45379 298 aaPredicted RBP18.15■□□□□ 0.5
MSH6-208ENST00000493177 RALBP1Q15311 655 aa18.15■□□□□ 0.5
MSH6-208ENST00000493177 EZH2Q15910 746 aaKnown RBP18.15■□□□□ 0.5
MSH6-208ENST00000493177 PRKRIP1Q9H875 184 aaPredicted RBP18.15■□□□□ 0.5
MSH6-208ENST00000493177 ANKRD26Q9UPS8 1709 aa18.15■□□□□ 0.5
MSH6-208ENST00000493177 DISP2A7MBM2 1401 aa18.15■□□□□ 0.5
MSH6-208ENST00000493177 TNS2Q63HR2 1409 aa18.15■□□□□ 0.5
MSH6-208ENST00000493177 MAP2P11137 1827 aaKnown RBP18.14■□□□□ 0.49
MSH6-208ENST00000493177 PARD3Q8TEW0 1356 aa18.12■□□□□ 0.49
MSH6-208ENST00000493177 PPM1GO15355 546 aaPredicted RBP18.11■□□□□ 0.49
MSH6-208ENST00000493177 MARCH10Q8NA82 808 aaPredicted RBP18.11■□□□□ 0.49
MSH6-208ENST00000493177 RREB1Q92766 1687 aa18.11■□□□□ 0.49
MSH6-208ENST00000493177 PSDA5PKW4 1024 aaPredicted RBP18.1■□□□□ 0.49
MSH6-208ENST00000493177 MIER1Q8N108 512 aa18.1■□□□□ 0.49
MSH6-208ENST00000493177 NUP188Q5SRE5 1749 aa18.09■□□□□ 0.49
MSH6-208ENST00000493177 FLT4P35916 1363 aa18.09■□□□□ 0.49
MSH6-208ENST00000493177 MYBBP1AQ9BQG0 1328 aaKnown RBP18.08■□□□□ 0.49
MSH6-208ENST00000493177 CAMKK2Q96RR4 588 aa18.08■□□□□ 0.48
MSH6-208ENST00000493177 RGPD3A6NKT7 1758 aaPredicted RBP18.08■□□□□ 0.48
MSH6-208ENST00000493177 RGPD4Q7Z3J3 1758 aa18.08■□□□□ 0.48
MSH6-208ENST00000493177 PPP2R1AP30153 589 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms