RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 ARFGEF1Q9Y6D6 1849 aa9.6□□□□□ -0.87
HERC4-211ENST00000492996 UBR3Q6ZT12 1888 aa9.6□□□□□ -0.87
HERC4-211ENST00000492996 WASLO00401 505 aaPredicted RBP9.6□□□□□ -0.87
HERC4-211ENST00000492996 NGLY1Q96IV0 654 aa9.6□□□□□ -0.87
HERC4-211ENST00000492996 PRKRIP1Q9H875 184 aaPredicted RBP9.6□□□□□ -0.87
HERC4-211ENST00000492996 MRS2Q9HD23 443 aa9.6□□□□□ -0.87
HERC4-211ENST00000492996 AFF2P51816 1311 aa9.59□□□□□ -0.87
HERC4-211ENST00000492996 PRR36Q9H6K5 1346 aa9.59□□□□□ -0.87
HERC4-211ENST00000492996 C10orf71Q711Q0 1435 aa9.59□□□□□ -0.87
HERC4-211ENST00000492996 NEFLP07196 543 aa9.58□□□□□ -0.88
HERC4-211ENST00000492996 ANO8Q9HCE9 1232 aaPredicted RBP9.58□□□□□ -0.88
HERC4-211ENST00000492996 TJP1Q07157 1748 aa9.58□□□□□ -0.88
HERC4-211ENST00000492996 SENP3-EIF4A1A0A087X0R7 540 aa9.58□□□□□ -0.88
HERC4-211ENST00000492996 RXRBP28702 533 aa9.58□□□□□ -0.88
HERC4-211ENST00000492996 SLC26A8Q96RN1 970 aa9.58□□□□□ -0.88
HERC4-211ENST00000492996 NPC1L1Q9UHC9 1359 aa9.57□□□□□ -0.88
HERC4-211ENST00000492996 ST20-MTHFSA0A0A6YYL1 179 aa9.57□□□□□ -0.88
HERC4-211ENST00000492996 LAMB4A4D0S4 1761 aa9.57□□□□□ -0.88
HERC4-211ENST00000492996 IRX6P78412 446 aaPredicted RBP9.55□□□□□ -0.88
HERC4-211ENST00000492996 STAG3Q9UJ98 1225 aa9.55□□□□□ -0.88
HERC4-211ENST00000492996 SPATA31A1Q5TZJ5 1347 aa9.55□□□□□ -0.88
HERC4-211ENST00000492996 SCN7AQ01118 1682 aa9.55□□□□□ -0.88
HERC4-211ENST00000492996 GJD4Q96KN9 370 aaPredicted RBP9.55□□□□□ -0.88
HERC4-211ENST00000492996 KIAA0232Q92628 1395 aa9.55□□□□□ -0.88
HERC4-211ENST00000492996 NBPF1Q3BBV0 1214 aa9.54□□□□□ -0.88
HERC4-211ENST00000492996 PPIP5K1Q6PFW1 1433 aa9.54□□□□□ -0.88
HERC4-211ENST00000492996 PHF8Q9UPP1 1060 aa9.54□□□□□ -0.88
HERC4-211ENST00000492996 RGPD2P0DJD1 1756 aa9.54□□□□□ -0.88
HERC4-211ENST00000492996 ROCK2O75116 1388 aaKnown RBP9.54□□□□□ -0.88
HERC4-211ENST00000492996 ZNF692Q9BU19 519 aaPredicted RBP9.54□□□□□ -0.88
HERC4-211ENST00000492996 THSD7BQ9C0I4 1608 aa9.53□□□□□ -0.88
HERC4-211ENST00000492996 CHD4Q14839 1912 aa9.53□□□□□ -0.88
HERC4-211ENST00000492996 C4AP0C0L4 1744 aa9.52□□□□□ -0.88
HERC4-211ENST00000492996 C4BP0C0L5 1744 aa9.52□□□□□ -0.88
HERC4-211ENST00000492996 CGNL1Q0VF96 1302 aa9.52□□□□□ -0.88
HERC4-211ENST00000492996 TSHZ2Q9NRE2 1034 aa9.52□□□□□ -0.88
HERC4-211ENST00000492996 ANKRD36BQ8N2N9 1353 aa9.51□□□□□ -0.89
HERC4-211ENST00000492996 MAP3K19Q56UN5 1328 aa9.5□□□□□ -0.89
HERC4-211ENST00000492996 PLSCR1O15162 318 aa9.49□□□□□ -0.89
HERC4-211ENST00000492996 RGL2O15211 777 aa9.49□□□□□ -0.89
HERC4-211ENST00000492996 KDRP35968 1356 aa9.49□□□□□ -0.89
HERC4-211ENST00000492996 TNRC6CQ9HCJ0 1690 aaKnown RBP9.48□□□□□ -0.89
HERC4-211ENST00000492996 KRT28Q7Z3Y7 464 aa9.47□□□□□ -0.89
HERC4-211ENST00000492996 LAMB2P55268 1798 aa9.47□□□□□ -0.89
HERC4-211ENST00000492996 TMC1Q8TDI8 760 aa9.47□□□□□ -0.89
HERC4-211ENST00000492996 KDM3BQ7LBC6 1761 aa9.47□□□□□ -0.89
HERC4-211ENST00000492996 NSD3Q9BZ95 1437 aa9.46□□□□□ -0.89
HERC4-211ENST00000492996 COL3A1P02461 1466 aaPredicted RBP9.46□□□□□ -0.9
HERC4-211ENST00000492996 CCDC61Q9Y6R9 512 aa9.46□□□□□ -0.9
HERC4-211ENST00000492996 EIF5BO60841 1220 aaKnown RBP9.45□□□□□ -0.9
HERC4-211ENST00000492996 CCDC136Q96JN2 1154 aa9.45□□□□□ -0.9
HERC4-211ENST00000492996 CENPJQ9HC77 1338 aaPredicted RBP9.45□□□□□ -0.9
HERC4-211ENST00000492996 KCNH5Q8NCM2 988 aa9.44□□□□□ -0.9
HERC4-211ENST00000492996 CAMKK2Q96RR4 588 aa9.44□□□□□ -0.9
HERC4-211ENST00000492996 ORAI2Q96SN7 254 aa9.44□□□□□ -0.9
HERC4-211ENST00000492996 USP21Q9UK80 565 aa9.44□□□□□ -0.9
HERC4-211ENST00000492996 SALL2Q9Y467 1007 aaPredicted RBP9.44□□□□□ -0.9
HERC4-211ENST00000492996 ZBED9Q6R2W3 1325 aa9.43□□□□□ -0.9
HERC4-211ENST00000492996 QTRT2Q9H974 415 aaKnown RBP9.43□□□□□ -0.9
HERC4-211ENST00000492996 DICER1Q9UPY3 1922 aaKnown RBP9.43□□□□□ -0.9
HERC4-211ENST00000492996 CC2D1BQ5T0F9 858 aaKnown RBP9.43□□□□□ -0.9
HERC4-211ENST00000492996 WDR17Q8IZU2 1322 aa9.43□□□□□ -0.9
HERC4-211ENST00000492996 PHF23Q9BUL5 403 aaPredicted RBP9.43□□□□□ -0.9
HERC4-211ENST00000492996 CARD10Q9BWT7 1032 aa9.43□□□□□ -0.9
HERC4-211ENST00000492996 EVC2Q86UK5 1308 aa9.42□□□□□ -0.9
HERC4-211ENST00000492996 LRRC37AA6NMS7 1700 aa9.42□□□□□ -0.9
HERC4-211ENST00000492996 PIP4K2BP78356 416 aa9.42□□□□□ -0.9
HERC4-211ENST00000492996 RIC1Q4ADV7 1423 aa9.42□□□□□ -0.9
HERC4-211ENST00000492996 N4BP2Q86UW6 1770 aaPredicted RBP9.42□□□□□ -0.9
HERC4-211ENST00000492996 PRAM1Q96QH2 718 aa9.41□□□□□ -0.9
HERC4-211ENST00000492996 CHGAP10645 457 aaKnown RBP9.41□□□□□ -0.9
HERC4-211ENST00000492996 ARHGEF25Q86VW2 580 aa9.41□□□□□ -0.9
HERC4-211ENST00000492996 PNISRQ8TF01 805 aaKnown RBP9.41□□□□□ -0.9
HERC4-211ENST00000492996 TESK2Q96S53 571 aa9.41□□□□□ -0.9
HERC4-211ENST00000492996 CFAP70Q5T0N1 1121 aa9.41□□□□□ -0.9
HERC4-211ENST00000492996 NUDT16Q96DE0 195 aaKnown RBP9.41□□□□□ -0.9
HERC4-211ENST00000492996 NKX1-1Q15270 411 aaPredicted RBP9.4□□□□□ -0.9
HERC4-211ENST00000492996 PANK3Q9H999 370 aa9.4□□□□□ -0.9
HERC4-211ENST00000492996 TMF1P82094 1093 aa9.4□□□□□ -0.91
HERC4-211ENST00000492996 ADAMTSL1Q8N6G6 1762 aa9.39□□□□□ -0.91
HERC4-211ENST00000492996 A0A1W2PP64 1363 aa9.39□□□□□ -0.91
HERC4-211ENST00000492996 MYBBP1AQ9BQG0 1328 aaKnown RBP9.39□□□□□ -0.91
HERC4-211ENST00000492996 ADCY9O60503 1353 aa9.39□□□□□ -0.91
HERC4-211ENST00000492996 FAM83GA6ND36 823 aa9.39□□□□□ -0.91
HERC4-211ENST00000492996 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.39□□□□□ -0.914e-7■■■□□ 15.5
HERC4-211ENST00000492996 DDX60Q8IY21 1712 aaKnown RBP9.39□□□□□ -0.91
HERC4-211ENST00000492996 RALBP1Q15311 655 aa9.38□□□□□ -0.91
HERC4-211ENST00000492996 FAM196AQ6ZSG2 479 aa9.38□□□□□ -0.91
HERC4-211ENST00000492996 SGIP1Q9BQI5 828 aa9.38□□□□□ -0.91
HERC4-211ENST00000492996 PXDNLA1KZ92 1463 aa9.38□□□□□ -0.91
HERC4-211ENST00000492996 KTN1Q86UP2 1357 aaKnown RBP9.38□□□□□ -0.91
HERC4-211ENST00000492996 SENP3Q9H4L4 574 aaPredicted RBP9.38□□□□□ -0.91
HERC4-211ENST00000492996 PER1O15534 1290 aaPredicted RBP9.37□□□□□ -0.91
HERC4-211ENST00000492996 TTC21BQ7Z4L5 1316 aa9.37□□□□□ -0.91
HERC4-211ENST00000492996 IBTKQ9P2D0 1353 aaPredicted RBP9.37□□□□□ -0.91
HERC4-211ENST00000492996 B4GALNT3Q6L9W6 998 aa9.37□□□□□ -0.91
HERC4-211ENST00000492996 ACEP12821 1306 aa9.36□□□□□ -0.91
HERC4-211ENST00000492996 WDR90Q96KV7 1748 aa9.36□□□□□ -0.91
HERC4-211ENST00000492996 ANKRD36CQ5JPF3 1778 aa9.36□□□□□ -0.91
HERC4-211ENST00000492996 NLRP13Q86W25 1043 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms