RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 TOM1L2Q6ZVM7 507 aa13.01□□□□□ -0.33
HDAC3-212ENST00000492407 OVOS2A0A0G2JMS6 1433 aa13.01□□□□□ -0.33
HDAC3-212ENST00000492407 OVOS2A0A0J9YW53 1432 aa13.01□□□□□ -0.33
HDAC3-212ENST00000492407 OVOS2Q6IE36 1432 aa13.01□□□□□ -0.33
HDAC3-212ENST00000492407 PARP4Q9UKK3 1724 aaKnown RBP13□□□□□ -0.33
HDAC3-212ENST00000492407 CARD10Q9BWT7 1032 aa13□□□□□ -0.33
HDAC3-212ENST00000492407 ABCC6O95255 1503 aa12.99□□□□□ -0.33
HDAC3-212ENST00000492407 USP31Q70CQ4 1352 aa12.99□□□□□ -0.33
HDAC3-212ENST00000492407 BCL11BQ9C0K0 894 aaPredicted RBP12.99□□□□□ -0.33
HDAC3-212ENST00000492407 AXIN2Q9Y2T1 843 aa12.99□□□□□ -0.33
HDAC3-212ENST00000492407 KTN1Q86UP2 1357 aaKnown RBP12.98□□□□□ -0.33
HDAC3-212ENST00000492407 CCDC7Q96M83 1385 aa12.97□□□□□ -0.33
HDAC3-212ENST00000492407 ZBTB7CA1YPR0 619 aa12.97□□□□□ -0.33
HDAC3-212ENST00000492407 CARD11Q9BXL7 1154 aa12.97□□□□□ -0.33
HDAC3-212ENST00000492407 PIK3C2AO00443 1686 aa12.96□□□□□ -0.33
HDAC3-212ENST00000492407 COL18A1P39060 1754 aa12.96□□□□□ -0.34
HDAC3-212ENST00000492407 EXOC5O00471 708 aa12.95□□□□□ -0.34
HDAC3-212ENST00000492407 CSB-PGBD3P0DP91 1061 aa12.95□□□□□ -0.34
HDAC3-212ENST00000492407 HDGFL2Q7Z4V5 671 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-212ENST00000492407 RREB1Q92766 1687 aa12.95□□□□□ -0.34
HDAC3-212ENST00000492407 PEAK1Q9H792 1746 aa12.94□□□□□ -0.34
HDAC3-212ENST00000492407 MARCH10Q8NA82 808 aaPredicted RBP12.94□□□□□ -0.34
HDAC3-212ENST00000492407 SPON1Q9HCB6 807 aa12.94□□□□□ -0.34
HDAC3-212ENST00000492407 TERF2IPQ9NYB0 399 aa12.94□□□□□ -0.34
HDAC3-212ENST00000492407 NFAT5O94916 1531 aa12.93□□□□□ -0.34
HDAC3-212ENST00000492407 RGPD3A6NKT7 1758 aaPredicted RBP12.93□□□□□ -0.34
HDAC3-212ENST00000492407 AKAP12Q02952 1782 aa12.93□□□□□ -0.34
HDAC3-212ENST00000492407 RGPD4Q7Z3J3 1758 aa12.93□□□□□ -0.34
HDAC3-212ENST00000492407 NINLQ9Y2I6 1382 aa12.93□□□□□ -0.34
HDAC3-212ENST00000492407 KCNQ2O43526 872 aa12.92□□□□□ -0.34
HDAC3-212ENST00000492407 EDC4Q6P2E9 1401 aaKnown RBP12.92□□□□□ -0.34
HDAC3-212ENST00000492407 TONSLQ96HA7 1378 aa12.92□□□□□ -0.34
HDAC3-212ENST00000492407 LRRC37A3O60309 1634 aa12.91□□□□□ -0.34
HDAC3-212ENST00000492407 CD163L1Q9NR16 1453 aa12.91□□□□□ -0.34
HDAC3-212ENST00000492407 NUP188Q5SRE5 1749 aa12.91□□□□□ -0.34
HDAC3-212ENST00000492407 ERBB3P21860 1342 aa12.9□□□□□ -0.34
HDAC3-212ENST00000492407 SOX12O15370 315 aa12.9□□□□□ -0.34
HDAC3-212ENST00000492407 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.9□□□□□ -0.34
HDAC3-212ENST00000492407 TMC1Q8TDI8 760 aa12.9□□□□□ -0.34
HDAC3-212ENST00000492407 SLC12A5Q9H2X9 1139 aa12.9□□□□□ -0.34
HDAC3-212ENST00000492407 USP54Q70EL1 1684 aa12.89□□□□□ -0.35
HDAC3-212ENST00000492407 PRKCSHP14314 528 aaPredicted RBP12.89□□□□□ -0.35
HDAC3-212ENST00000492407 NME9Q86XW9 330 aa12.89□□□□□ -0.35
HDAC3-212ENST00000492407 PROM2Q8N271 834 aa12.89□□□□□ -0.35
HDAC3-212ENST00000492407 TNS2Q63HR2 1409 aa12.88□□□□□ -0.35
HDAC3-212ENST00000492407 MON2Q7Z3U7 1717 aa12.88□□□□□ -0.35
HDAC3-212ENST00000492407 IL2RBP14784 551 aa12.88□□□□□ -0.35
HDAC3-212ENST00000492407 NLRP2Q9NX02 1062 aa12.88□□□□□ -0.35
HDAC3-212ENST00000492407 DCAF8L1A6NGE4 600 aa12.87□□□□□ -0.35
HDAC3-212ENST00000492407 TXNRD1Q16881 649 aa12.87□□□□□ -0.35
HDAC3-212ENST00000492407 IP6K1Q92551 441 aa12.87□□□□□ -0.35
HDAC3-212ENST00000492407 TESK2Q96S53 571 aa12.87□□□□□ -0.35
HDAC3-212ENST00000492407 PPP1R1BQ9UD71 204 aaPredicted RBP12.87□□□□□ -0.35
HDAC3-212ENST00000492407 A0A1W2PP64 1363 aa12.86□□□□□ -0.35
HDAC3-212ENST00000492407 PTF1AQ7RTS3 328 aa12.86□□□□□ -0.35
HDAC3-212ENST00000492407 ANKRD24Q8TF21 1146 aa12.86□□□□□ -0.35
HDAC3-212ENST00000492407 STK32BQ9NY57 414 aa12.86□□□□□ -0.35
HDAC3-212ENST00000492407 SBF2Q86WG5 1849 aa12.85□□□□□ -0.35
HDAC3-212ENST00000492407 WNK3Q9BYP7 1800 aa12.85□□□□□ -0.35
HDAC3-212ENST00000492407 SLC15A2Q16348 729 aa12.85□□□□□ -0.35
HDAC3-212ENST00000492407 ANO8Q9HCE9 1232 aaPredicted RBP12.85□□□□□ -0.35
HDAC3-212ENST00000492407 ST20-MTHFSA0A0A6YYL1 179 aa12.84□□□□□ -0.35
HDAC3-212ENST00000492407 COG3Q96JB2 828 aa12.84□□□□□ -0.35
HDAC3-212ENST00000492407 CDCA8Q53HL2 280 aa12.82□□□□□ -0.36
HDAC3-212ENST00000492407 ANKRD36BQ8N2N9 1353 aa12.81□□□□□ -0.36
HDAC3-212ENST00000492407 TMF1P82094 1093 aa12.81□□□□□ -0.36
HDAC3-212ENST00000492407 SLC27A3Q5K4L6 730 aa12.81□□□□□ -0.36
HDAC3-212ENST00000492407 MTFR1LQ9H019 292 aa12.81□□□□□ -0.36
HDAC3-212ENST00000492407 TIMELESSQ9UNS1 1208 aa12.81□□□□□ -0.36
HDAC3-212ENST00000492407 RGPD5Q99666 1765 aa12.81□□□□□ -0.36
HDAC3-212ENST00000492407 HMGB2P26583 209 aaKnown RBP12.8□□□□□ -0.36
HDAC3-212ENST00000492407 PTGER2P43116 358 aa12.8□□□□□ -0.36
HDAC3-212ENST00000492407 CGNL1Q0VF96 1302 aa12.8□□□□□ -0.36
HDAC3-212ENST00000492407 RTL1A6NKG5 1358 aa12.8□□□□□ -0.36
HDAC3-212ENST00000492407 NHSQ6T4R5 1651 aa12.8□□□□□ -0.36
HDAC3-212ENST00000492407 CASZ1Q86V15 1759 aa12.79□□□□□ -0.36
HDAC3-212ENST00000492407 HOXC9P31274 260 aa12.79□□□□□ -0.36
HDAC3-212ENST00000492407 AMPHP49418 695 aa12.79□□□□□ -0.36
HDAC3-212ENST00000492407 TRIM26Q12899 539 aaPredicted RBP12.79□□□□□ -0.36
HDAC3-212ENST00000492407 MAP3K19Q56UN5 1328 aa12.79□□□□□ -0.36
HDAC3-212ENST00000492407 ZBTB7AO95365 584 aa12.78□□□□□ -0.36
HDAC3-212ENST00000492407 YY1P25490 414 aa12.78□□□□□ -0.36
HDAC3-212ENST00000492407 SLC16A10Q8TF71 515 aa12.78□□□□□ -0.36
HDAC3-212ENST00000492407 ACSBG1Q96GR2 724 aa12.78□□□□□ -0.36
HDAC3-212ENST00000492407 KIF24Q5T7B8 1368 aa12.78□□□□□ -0.36
HDAC3-212ENST00000492407 FYB1O15117 783 aa12.77□□□□□ -0.37
HDAC3-212ENST00000492407 SGIP1Q9BQI5 828 aa12.77□□□□□ -0.37
HDAC3-212ENST00000492407 PDGFDQ9GZP0 370 aaPredicted RBP12.77□□□□□ -0.37
HDAC3-212ENST00000492407 FAM208AQ9UK61 1670 aaKnown RBP12.77□□□□□ -0.37
HDAC3-212ENST00000492407 LTN1O94822 1766 aa12.76□□□□□ -0.37
HDAC3-212ENST00000492407 ZCRB1Q8TBF4 217 aaKnown RBP12.76□□□□□ -0.37
HDAC3-212ENST00000492407 DDX54Q8TDD1 881 aaKnown RBP12.76□□□□□ -0.37
HDAC3-212ENST00000492407 ATF5Q9Y2D1 282 aaPredicted RBP12.76□□□□□ -0.37
HDAC3-212ENST00000492407 MAP3K5Q99683 1374 aa12.76□□□□□ -0.37
HDAC3-212ENST00000492407 AKT1S1Q96B36 256 aa12.75□□□□□ -0.37
HDAC3-212ENST00000492407 LTV1Q96GA3 475 aaPredicted RBP12.75□□□□□ -0.37
HDAC3-212ENST00000492407 USP47Q96K76 1375 aa12.75□□□□□ -0.37
HDAC3-212ENST00000492407 ARXQ96QS3 562 aa12.74□□□□□ -0.37
HDAC3-212ENST00000492407 SYT17Q9BSW7 474 aa12.74□□□□□ -0.37
HDAC3-212ENST00000492407 LRRC4BQ9NT99 713 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms