RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 CD163L1Q9NR16 1453 aa22.37■■□□□ 1.17
SMPD4-220ENST00000491319 SOX12O15370 315 aa22.35■■□□□ 1.17
SMPD4-220ENST00000491319 EZH2Q15910 746 aaKnown RBP22.35■■□□□ 1.17
SMPD4-220ENST00000491319 AXIN2Q9Y2T1 843 aa22.34■■□□□ 1.17
SMPD4-220ENST00000491319 ABCC6O95255 1503 aa22.33■■□□□ 1.17
SMPD4-220ENST00000491319 TOM1L2Q6ZVM7 507 aa22.33■■□□□ 1.17
SMPD4-220ENST00000491319 ARHGEF25Q86VW2 580 aa22.33■■□□□ 1.17
SMPD4-220ENST00000491319 WDR17Q8IZU2 1322 aa22.32■■□□□ 1.16
SMPD4-220ENST00000491319 KCNH5Q8NCM2 988 aa22.32■■□□□ 1.16
SMPD4-220ENST00000491319 CAMKK2Q96RR4 588 aa22.32■■□□□ 1.16
SMPD4-220ENST00000491319 APBA3O96018 575 aa22.31■■□□□ 1.16
SMPD4-220ENST00000491319 OVOS2A0A0G2JMS6 1433 aa22.31■■□□□ 1.16
SMPD4-220ENST00000491319 OVOS2A0A0J9YW53 1432 aa22.31■■□□□ 1.16
SMPD4-220ENST00000491319 OVOS2Q6IE36 1432 aa22.31■■□□□ 1.16
SMPD4-220ENST00000491319 RGPD3A6NKT7 1758 aaPredicted RBP22.3■■□□□ 1.16
SMPD4-220ENST00000491319 RGPD4Q7Z3J3 1758 aa22.3■■□□□ 1.16
SMPD4-220ENST00000491319 PARD3Q8TEW0 1356 aa22.3■■□□□ 1.16
SMPD4-220ENST00000491319 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.3■■□□□ 1.16
SMPD4-220ENST00000491319 R3HDM1Q15032 1099 aaKnown RBP22.29■■□□□ 1.16
SMPD4-220ENST00000491319 USP31Q70CQ4 1352 aa22.28■■□□□ 1.16
SMPD4-220ENST00000491319 TMC1Q8TDI8 760 aa22.28■■□□□ 1.16
SMPD4-220ENST00000491319 NME9Q86XW9 330 aa22.27■■□□□ 1.16
SMPD4-220ENST00000491319 A0A1W2PP64 1363 aa22.26■■□□□ 1.15
SMPD4-220ENST00000491319 EDC4Q6P2E9 1401 aaKnown RBP22.26■■□□□ 1.15
SMPD4-220ENST00000491319 TRIM26Q12899 539 aaPredicted RBP22.26■■□□□ 1.15
SMPD4-220ENST00000491319 DDB1Q16531 1140 aa22.26■■□□□ 1.15
SMPD4-220ENST00000491319 SLC12A5Q9H2X9 1139 aa22.26■■□□□ 1.15
SMPD4-220ENST00000491319 CSB-PGBD3P0DP91 1061 aa22.25■■□□□ 1.15
SMPD4-220ENST00000491319 HDGFL2Q7Z4V5 671 aaPredicted RBP22.24■■□□□ 1.15
SMPD4-220ENST00000491319 TESK2Q96S53 571 aa22.22■■□□□ 1.15
SMPD4-220ENST00000491319 CARD10Q9BWT7 1032 aa22.22■■□□□ 1.15
SMPD4-220ENST00000491319 C11orf95C9JLR9 678 aaPredicted RBP22.21■■□□□ 1.15
SMPD4-220ENST00000491319 ST20-MTHFSA0A0A6YYL1 179 aa22.2■■□□□ 1.14
SMPD4-220ENST00000491319 CDCA7Q9BWT1 371 aaPredicted RBP22.2■■□□□ 1.14
SMPD4-220ENST00000491319 TERF2IPQ9NYB0 399 aa22.2■■□□□ 1.14
SMPD4-220ENST00000491319 CCDC7Q96M83 1385 aa22.2■■□□□ 1.14
SMPD4-220ENST00000491319 MARCH10Q8NA82 808 aaPredicted RBP22.19■■□□□ 1.14
SMPD4-220ENST00000491319 PUS7Q96PZ0 661 aaKnown RBP22.19■■□□□ 1.14
SMPD4-220ENST00000491319 TNS2Q63HR2 1409 aa22.19■■□□□ 1.14
SMPD4-220ENST00000491319 FAM208AQ9UK61 1670 aaKnown RBP22.19■■□□□ 1.14
SMPD4-220ENST00000491319 ERBB3P21860 1342 aa22.18■■□□□ 1.14
SMPD4-220ENST00000491319 KAT6BQ8WYB5 2073 aa22.18■■□□□ 1.14
SMPD4-220ENST00000491319 NHSQ6T4R5 1651 aa22.17■■□□□ 1.14
SMPD4-220ENST00000491319 BCL9O00512 1426 aa22.17■■□□□ 1.14
SMPD4-220ENST00000491319 NINLQ9Y2I6 1382 aa22.17■■□□□ 1.14
SMPD4-220ENST00000491319 PTF1AQ7RTS3 328 aa22.17■■□□□ 1.14
SMPD4-220ENST00000491319 RGPD2P0DJD1 1756 aa22.16■■□□□ 1.14
SMPD4-220ENST00000491319 KIF20BQ96Q89 1820 aa22.14■■□□□ 1.13
SMPD4-220ENST00000491319 USP47Q96K76 1375 aa22.13■■□□□ 1.13
SMPD4-220ENST00000491319 NBPF14Q5TI25 921 aa22.13■■□□□ 1.13
SMPD4-220ENST00000491319 BCL11BQ9C0K0 894 aaPredicted RBP22.13■■□□□ 1.13
SMPD4-220ENST00000491319 CASZ1Q86V15 1759 aa22.12■■□□□ 1.13
SMPD4-220ENST00000491319 NLRP2Q9NX02 1062 aa22.12■■□□□ 1.13
SMPD4-220ENST00000491319 MYOM1P52179 1685 aa22.11■■□□□ 1.13
SMPD4-220ENST00000491319 BTAF1O14981 1849 aa22.11■■□□□ 1.13
SMPD4-220ENST00000491319 EXOC5O00471 708 aa22.11■■□□□ 1.13
SMPD4-220ENST00000491319 PLSCR1O15162 318 aa22.11■■□□□ 1.13
SMPD4-220ENST00000491319 ANKRD24Q8TF21 1146 aa22.11■■□□□ 1.13
SMPD4-220ENST00000491319 ANKRD36BQ8N2N9 1353 aa22.1■■□□□ 1.13
SMPD4-220ENST00000491319 ANO8Q9HCE9 1232 aaPredicted RBP22.08■■□□□ 1.13
SMPD4-220ENST00000491319 SHANK3Q9BYB0 1731 aa22.08■■□□□ 1.12
SMPD4-220ENST00000491319 IL2RBP14784 551 aa22.07■■□□□ 1.12
SMPD4-220ENST00000491319 SLC24A1O60721 1099 aa22.06■■□□□ 1.12
SMPD4-220ENST00000491319 COG3Q96JB2 828 aa22.06■■□□□ 1.12
SMPD4-220ENST00000491319 KCNQ2O43526 872 aa22.05■■□□□ 1.12
SMPD4-220ENST00000491319 TMF1P82094 1093 aa22.05■■□□□ 1.12
SMPD4-220ENST00000491319 PROM2Q8N271 834 aa22.05■■□□□ 1.12
SMPD4-220ENST00000491319 IP6K1Q92551 441 aa22.05■■□□□ 1.12
SMPD4-220ENST00000491319 MAP3K19Q56UN5 1328 aa22.05■■□□□ 1.12
SMPD4-220ENST00000491319 FBLN1P23142 703 aa22.04■■□□□ 1.12
SMPD4-220ENST00000491319 LTV1Q96GA3 475 aaPredicted RBP22.04■■□□□ 1.12
SMPD4-220ENST00000491319 DOT1LQ8TEK3 1739 aa22.03■■□□□ 1.12
SMPD4-220ENST00000491319 ACSBG1Q96GR2 724 aa22.03■■□□□ 1.12
SMPD4-220ENST00000491319 PAPPAQ13219 1627 aa22.02■■□□□ 1.11
SMPD4-220ENST00000491319 HOXC9P31274 260 aa22.01■■□□□ 1.11
SMPD4-220ENST00000491319 TXNRD1Q16881 649 aa22.01■■□□□ 1.11
SMPD4-220ENST00000491319 AMPHP49418 695 aa21.99■■□□□ 1.11
SMPD4-220ENST00000491319 GGNBP2Q9H3C7 697 aa21.99■■□□□ 1.11
SMPD4-220ENST00000491319 SPON1Q9HCB6 807 aa21.99■■□□□ 1.11
SMPD4-220ENST00000491319 RTL1A6NKG5 1358 aa21.99■■□□□ 1.11
SMPD4-220ENST00000491319 FYB1O15117 783 aa21.98■■□□□ 1.11
SMPD4-220ENST00000491319 PDGFDQ9GZP0 370 aaPredicted RBP21.98■■□□□ 1.11
SMPD4-220ENST00000491319 MEGF6O75095 1541 aa21.97■■□□□ 1.11
SMPD4-220ENST00000491319 RRS1Q15050 365 aaKnown RBP21.97■■□□□ 1.11
SMPD4-220ENST00000491319 PPP1R1BQ9UD71 204 aaPredicted RBP21.95■■□□□ 1.1
SMPD4-220ENST00000491319 ANKRD26Q9UPS8 1709 aa21.94■■□□□ 1.1
SMPD4-220ENST00000491319 CDCA8Q53HL2 280 aa21.94■■□□□ 1.1
SMPD4-220ENST00000491319 PCGF6Q9BYE7 350 aa21.94■■□□□ 1.1
SMPD4-220ENST00000491319 STK32BQ9NY57 414 aa21.94■■□□□ 1.1
SMPD4-220ENST00000491319 LY75O60449 1722 aa21.94■■□□□ 1.1
SMPD4-220ENST00000491319 TUBGCP6Q96RT7 1819 aa21.94■■□□□ 1.1
SMPD4-220ENST00000491319 DDX54Q8TDD1 881 aaKnown RBP21.93■■□□□ 1.1
SMPD4-220ENST00000491319 CLSPNQ9HAW4 1339 aa21.93■■□□□ 1.1
SMPD4-220ENST00000491319 MAP2P11137 1827 aaKnown RBP21.92■■□□□ 1.1
SMPD4-220ENST00000491319 QSER1Q2KHR3 1735 aa21.92■■□□□ 1.1
SMPD4-220ENST00000491319 NSD3Q9BZ95 1437 aa21.92■■□□□ 1.1
SMPD4-220ENST00000491319 SLC15A2Q16348 729 aa21.92■■□□□ 1.1
SMPD4-220ENST00000491319 TIMELESSQ9UNS1 1208 aa21.92■■□□□ 1.1
SMPD4-220ENST00000491319 ZBTB7AO95365 584 aa21.91■■□□□ 1.1
SMPD4-220ENST00000491319 SMG6Q86US8 1419 aaKnown RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms