RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 ABCC6O95255 1503 aa19.38■□□□□ 0.69
COL6A3-211ENST00000491233 SBF2Q86WG5 1849 aa19.37■□□□□ 0.69
COL6A3-211ENST00000491233 KCNH5Q8NCM2 988 aa19.37■□□□□ 0.69
COL6A3-211ENST00000491233 WDR17Q8IZU2 1322 aa19.36■□□□□ 0.69
COL6A3-211ENST00000491233 EZH2Q15910 746 aaKnown RBP19.36■□□□□ 0.69
COL6A3-211ENST00000491233 TOM1L2Q6ZVM7 507 aa19.36■□□□□ 0.69
COL6A3-211ENST00000491233 ARHGEF25Q86VW2 580 aa19.36■□□□□ 0.69
COL6A3-211ENST00000491233 AXIN2Q9Y2T1 843 aa19.35■□□□□ 0.69
COL6A3-211ENST00000491233 OVOS2A0A0G2JMS6 1433 aa19.34■□□□□ 0.69
COL6A3-211ENST00000491233 OVOS2A0A0J9YW53 1432 aa19.34■□□□□ 0.69
COL6A3-211ENST00000491233 OVOS2Q6IE36 1432 aa19.34■□□□□ 0.69
COL6A3-211ENST00000491233 PARD3Q8TEW0 1356 aa19.34■□□□□ 0.69
COL6A3-211ENST00000491233 TRIM26Q12899 539 aaPredicted RBP19.34■□□□□ 0.69
COL6A3-211ENST00000491233 USP31Q70CQ4 1352 aa19.33■□□□□ 0.69
COL6A3-211ENST00000491233 APBA3O96018 575 aa19.33■□□□□ 0.68
COL6A3-211ENST00000491233 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.33■□□□□ 0.68
COL6A3-211ENST00000491233 TMC1Q8TDI8 760 aa19.33■□□□□ 0.68
COL6A3-211ENST00000491233 CAMKK2Q96RR4 588 aa19.33■□□□□ 0.68
COL6A3-211ENST00000491233 RGPD3A6NKT7 1758 aaPredicted RBP19.32■□□□□ 0.68
COL6A3-211ENST00000491233 RGPD4Q7Z3J3 1758 aa19.32■□□□□ 0.68
COL6A3-211ENST00000491233 EDC4Q6P2E9 1401 aaKnown RBP19.32■□□□□ 0.68
COL6A3-211ENST00000491233 A0A1W2PP64 1363 aa19.32■□□□□ 0.68
COL6A3-211ENST00000491233 R3HDM1Q15032 1099 aaKnown RBP19.31■□□□□ 0.68
COL6A3-211ENST00000491233 HDGFL2Q7Z4V5 671 aaPredicted RBP19.31■□□□□ 0.68
COL6A3-211ENST00000491233 NME9Q86XW9 330 aa19.31■□□□□ 0.68
COL6A3-211ENST00000491233 SRCAPQ6ZRS2 3230 aa19.3■□□□□ 0.68
COL6A3-211ENST00000491233 CSB-PGBD3P0DP91 1061 aa19.3■□□□□ 0.68
COL6A3-211ENST00000491233 DDB1Q16531 1140 aa19.3■□□□□ 0.68
COL6A3-211ENST00000491233 SLC12A5Q9H2X9 1139 aa19.3■□□□□ 0.68
COL6A3-211ENST00000491233 C11orf95C9JLR9 678 aaPredicted RBP19.27■□□□□ 0.68
COL6A3-211ENST00000491233 TESK2Q96S53 571 aa19.27■□□□□ 0.68
COL6A3-211ENST00000491233 CARD10Q9BWT7 1032 aa19.27■□□□□ 0.68
COL6A3-211ENST00000491233 TERF2IPQ9NYB0 399 aa19.27■□□□□ 0.68
COL6A3-211ENST00000491233 CCDC7Q96M83 1385 aa19.27■□□□□ 0.68
COL6A3-211ENST00000491233 ST20-MTHFSA0A0A6YYL1 179 aa19.26■□□□□ 0.67
COL6A3-211ENST00000491233 PUS7Q96PZ0 661 aaKnown RBP19.26■□□□□ 0.67
COL6A3-211ENST00000491233 CDCA7Q9BWT1 371 aaPredicted RBP19.26■□□□□ 0.67
COL6A3-211ENST00000491233 TNS2Q63HR2 1409 aa19.25■□□□□ 0.67
COL6A3-211ENST00000491233 NINLQ9Y2I6 1382 aa19.25■□□□□ 0.67
COL6A3-211ENST00000491233 FAM208AQ9UK61 1670 aaKnown RBP19.24■□□□□ 0.67
COL6A3-211ENST00000491233 ERBB3P21860 1342 aa19.24■□□□□ 0.67
COL6A3-211ENST00000491233 MARCH10Q8NA82 808 aaPredicted RBP19.23■□□□□ 0.67
COL6A3-211ENST00000491233 BCL9O00512 1426 aa19.23■□□□□ 0.67
COL6A3-211ENST00000491233 USP47Q96K76 1375 aa19.22■□□□□ 0.67
COL6A3-211ENST00000491233 NHSQ6T4R5 1651 aa19.21■□□□□ 0.67
COL6A3-211ENST00000491233 PTF1AQ7RTS3 328 aa19.2■□□□□ 0.66
COL6A3-211ENST00000491233 KIF20BQ96Q89 1820 aa19.19■□□□□ 0.66
COL6A3-211ENST00000491233 NBPF14Q5TI25 921 aa19.19■□□□□ 0.66
COL6A3-211ENST00000491233 ANKRD24Q8TF21 1146 aa19.18■□□□□ 0.66
COL6A3-211ENST00000491233 BCL11BQ9C0K0 894 aaPredicted RBP19.18■□□□□ 0.66
COL6A3-211ENST00000491233 NLRP2Q9NX02 1062 aa19.18■□□□□ 0.66
COL6A3-211ENST00000491233 ANKRD36BQ8N2N9 1353 aa19.18■□□□□ 0.66
COL6A3-211ENST00000491233 EXOC5O00471 708 aa19.17■□□□□ 0.66
COL6A3-211ENST00000491233 SLC24A1O60721 1099 aa19.17■□□□□ 0.66
COL6A3-211ENST00000491233 MYOM1P52179 1685 aa19.17■□□□□ 0.66
COL6A3-211ENST00000491233 RGPD2P0DJD1 1756 aa19.16■□□□□ 0.66
COL6A3-211ENST00000491233 PLSCR1O15162 318 aa19.16■□□□□ 0.66
COL6A3-211ENST00000491233 CASZ1Q86V15 1759 aa19.16■□□□□ 0.66
COL6A3-211ENST00000491233 BTAF1O14981 1849 aa19.14■□□□□ 0.65
COL6A3-211ENST00000491233 IL2RBP14784 551 aa19.14■□□□□ 0.65
COL6A3-211ENST00000491233 TMF1P82094 1093 aa19.14■□□□□ 0.65
COL6A3-211ENST00000491233 COG3Q96JB2 828 aa19.14■□□□□ 0.65
COL6A3-211ENST00000491233 ANO8Q9HCE9 1232 aaPredicted RBP19.13■□□□□ 0.65
COL6A3-211ENST00000491233 MAP3K19Q56UN5 1328 aa19.12■□□□□ 0.65
COL6A3-211ENST00000491233 IP6K1Q92551 441 aa19.12■□□□□ 0.65
COL6A3-211ENST00000491233 SHANK3Q9BYB0 1731 aa19.11■□□□□ 0.65
COL6A3-211ENST00000491233 LTV1Q96GA3 475 aaPredicted RBP19.11■□□□□ 0.65
COL6A3-211ENST00000491233 DOT1LQ8TEK3 1739 aa19.09■□□□□ 0.65
COL6A3-211ENST00000491233 KAT6BQ8WYB5 2073 aa19.09■□□□□ 0.65
COL6A3-211ENST00000491233 KCNQ2O43526 872 aa19.09■□□□□ 0.65
COL6A3-211ENST00000491233 FBLN1P23142 703 aa19.09■□□□□ 0.65
COL6A3-211ENST00000491233 ACSBG1Q96GR2 724 aa19.09■□□□□ 0.65
COL6A3-211ENST00000491233 RTL1A6NKG5 1358 aa19.08■□□□□ 0.65
COL6A3-211ENST00000491233 PAPPAQ13219 1627 aa19.08■□□□□ 0.65
COL6A3-211ENST00000491233 HOXC9P31274 260 aa19.08■□□□□ 0.64
COL6A3-211ENST00000491233 PROM2Q8N271 834 aa19.08■□□□□ 0.64
COL6A3-211ENST00000491233 AMPHP49418 695 aa19.07■□□□□ 0.64
COL6A3-211ENST00000491233 TXNRD1Q16881 649 aa19.07■□□□□ 0.64
COL6A3-211ENST00000491233 GGNBP2Q9H3C7 697 aa19.07■□□□□ 0.64
COL6A3-211ENST00000491233 CDCA8Q53HL2 280 aa19.06■□□□□ 0.64
COL6A3-211ENST00000491233 PCGF6Q9BYE7 350 aa19.06■□□□□ 0.64
COL6A3-211ENST00000491233 SPON1Q9HCB6 807 aa19.06■□□□□ 0.64
COL6A3-211ENST00000491233 CLSPNQ9HAW4 1339 aa19.05■□□□□ 0.64
COL6A3-211ENST00000491233 FYB1O15117 783 aa19.05■□□□□ 0.64
COL6A3-211ENST00000491233 MEGF6O75095 1541 aa19.05■□□□□ 0.64
COL6A3-211ENST00000491233 RRS1Q15050 365 aaKnown RBP19.04■□□□□ 0.64
COL6A3-211ENST00000491233 TIMELESSQ9UNS1 1208 aa19.04■□□□□ 0.64
COL6A3-211ENST00000491233 NSD3Q9BZ95 1437 aa19.03■□□□□ 0.64
COL6A3-211ENST00000491233 STK32BQ9NY57 414 aa19.03■□□□□ 0.64
COL6A3-211ENST00000491233 SMG6Q86US8 1419 aaKnown RBP19.02■□□□□ 0.64
COL6A3-211ENST00000491233 PDGFDQ9GZP0 370 aaPredicted RBP19.02■□□□□ 0.64
COL6A3-211ENST00000491233 PPP1R1BQ9UD71 204 aaPredicted RBP19.02■□□□□ 0.64
COL6A3-211ENST00000491233 ANKRD26Q9UPS8 1709 aa19.02■□□□□ 0.63
COL6A3-211ENST00000491233 DDX54Q8TDD1 881 aaKnown RBP19.01■□□□□ 0.63
COL6A3-211ENST00000491233 SLC15A2Q16348 729 aa19■□□□□ 0.63
COL6A3-211ENST00000491233 LY75O60449 1722 aa18.99■□□□□ 0.63
COL6A3-211ENST00000491233 INSRP06213 1382 aa18.98■□□□□ 0.63
COL6A3-211ENST00000491233 FLT4P35916 1363 aa18.98■□□□□ 0.63
COL6A3-211ENST00000491233 QSER1Q2KHR3 1735 aa18.98■□□□□ 0.63
COL6A3-211ENST00000491233 ZBTB7AO95365 584 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms