RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 SNRPBP14678 240 aaKnown RBP8.12□□□□□ -1.11
VPS41-214ENST00000490924 CCDC102AQ96A19 550 aa8.12□□□□□ -1.11
VPS41-214ENST00000490924 PTPRKQ15262 1439 aa8.12□□□□□ -1.11
VPS41-214ENST00000490924 CAPN5O15484 640 aaPredicted RBP8.11□□□□□ -1.11
VPS41-214ENST00000490924 NFX1Q12986 1120 aaKnown RBP8.11□□□□□ -1.11
VPS41-214ENST00000490924 IQGAP2Q13576 1575 aa8.1□□□□□ -1.11
VPS41-214ENST00000490924 NEFLP07196 543 aa8.1□□□□□ -1.11
VPS41-214ENST00000490924 CCNYL3P0C7X3 344 aa8.1□□□□□ -1.11
VPS41-214ENST00000490924 EPRSP07814 1512 aaKnown RBP8.09□□□□□ -1.11
VPS41-214ENST00000490924 ITGAEP38570 1179 aa8.09□□□□□ -1.11
VPS41-214ENST00000490924 HLA-CQ95604 372 aa8.09□□□□□ -1.11
VPS41-214ENST00000490924 FAM217BQ9NTX9 383 aaPredicted RBP8.09□□□□□ -1.11
VPS41-214ENST00000490924 WDR62O43379 1518 aa8.08□□□□□ -1.12
VPS41-214ENST00000490924 SPDYE5A6NIY4 337 aa8.08□□□□□ -1.12
VPS41-214ENST00000490924 SKOR1P84550 965 aa8.08□□□□□ -1.12
VPS41-214ENST00000490924 GUCA2AQ02747 115 aa8.08□□□□□ -1.12
VPS41-214ENST00000490924 SCARF1Q14162 830 aa8.08□□□□□ -1.12
VPS41-214ENST00000490924 TTLL12Q14166 644 aaPredicted RBP8.08□□□□□ -1.12
VPS41-214ENST00000490924 DIXDC1Q155Q3 683 aa8.08□□□□□ -1.12
VPS41-214ENST00000490924 LCE2AQ5TA79 106 aaPredicted RBP8.08□□□□□ -1.12
VPS41-214ENST00000490924 VSIG10Q8N0Z9 540 aa8.08□□□□□ -1.12
VPS41-214ENST00000490924 IRF7Q92985 503 aa8.08□□□□□ -1.12
VPS41-214ENST00000490924 SIN3AQ96ST3 1273 aa8.08□□□□□ -1.12
VPS41-214ENST00000490924 NXF1Q9UBU9 619 aaKnown RBP8.08□□□□□ -1.12
VPS41-214ENST00000490924 ADAMTS12P58397 1594 aa8.08□□□□□ -1.12
VPS41-214ENST00000490924 ARID4BQ4LE39 1312 aaPredicted RBP8.07□□□□□ -1.12
VPS41-214ENST00000490924 DDX10Q13206 875 aaKnown RBP8.07□□□□□ -1.12
VPS41-214ENST00000490924 SYMPKQ92797 1274 aaKnown RBP8.07□□□□□ -1.12
VPS41-214ENST00000490924 LRRIQ1Q96JM4 1722 aa8.06□□□□□ -1.12
VPS41-214ENST00000490924 PTPRNQ16849 979 aa8.06□□□□□ -1.12
VPS41-214ENST00000490924 NPAS3Q8IXF0 933 aa8.06□□□□□ -1.12
VPS41-214ENST00000490924 KIAA0586Q9BVV6 1533 aa8.06□□□□□ -1.12
VPS41-214ENST00000490924 RPRD2Q5VT52 1461 aaKnown RBP8.06□□□□□ -1.12
VPS41-214ENST00000490924 NCOA1Q15788 1441 aa8.05□□□□□ -1.12
VPS41-214ENST00000490924 SSTR3P32745 418 aaPredicted RBP8.05□□□□□ -1.12
VPS41-214ENST00000490924 IFT140Q96RY7 1462 aa8.05□□□□□ -1.12
VPS41-214ENST00000490924 CNTLNQ9NXG0 1405 aa8.04□□□□□ -1.12
VPS41-214ENST00000490924 MAGI3Q5TCQ9 1506 aa8.04□□□□□ -1.12
VPS41-214ENST00000490924 DNMT1P26358 1616 aaKnown RBP8.04□□□□□ -1.12
VPS41-214ENST00000490924 VARSP26640 1264 aaKnown RBP8.04□□□□□ -1.12
VPS41-214ENST00000490924 CTHP32929 405 aa8.04□□□□□ -1.12
VPS41-214ENST00000490924 EIF4G2P78344 907 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS41-214ENST00000490924 TDRD9Q8NDG6 1382 aaKnown RBP8.04□□□□□ -1.12
VPS41-214ENST00000490924 DENND4BO75064 1496 aaPredicted RBP8.04□□□□□ -1.12
VPS41-214ENST00000490924 ADGRL2O95490 1459 aa8.04□□□□□ -1.12
VPS41-214ENST00000490924 MRC2Q9UBG0 1479 aa8.04□□□□□ -1.12
VPS41-214ENST00000490924 PBRM1Q86U86 1689 aa8.03□□□□□ -1.12
VPS41-214ENST00000490924 ANKRD30BQ9BXX2 1392 aa8.03□□□□□ -1.12
VPS41-214ENST00000490924 MTMR2Q13614 643 aa8.03□□□□□ -1.12
VPS41-214ENST00000490924 FAM174AQ8TBP5 190 aa8.03□□□□□ -1.12
VPS41-214ENST00000490924 UNC93B1Q9H1C4 597 aa8.03□□□□□ -1.12
VPS41-214ENST00000490924 CDK11AQ9UQ88 783 aaPredicted RBP8.03□□□□□ -1.12
VPS41-214ENST00000490924 SPATA31E1Q6ZUB1 1445 aa8.03□□□□□ -1.12
VPS41-214ENST00000490924 TEX14Q8IWB6 1497 aa8.02□□□□□ -1.13
VPS41-214ENST00000490924 SH3BP2P78314 561 aa8.02□□□□□ -1.13
VPS41-214ENST00000490924 KCNH2Q12809 1159 aa8.02□□□□□ -1.13
VPS41-214ENST00000490924 LINC01559Q495D7 138 aa8.02□□□□□ -1.13
VPS41-214ENST00000490924 PRR7Q8TB68 274 aa8.02□□□□□ -1.13
VPS41-214ENST00000490924 ANP32EQ9BTT0 268 aa8.02□□□□□ -1.13
VPS41-214ENST00000490924 EVA1BQ9NVM1 165 aa8.02□□□□□ -1.13
VPS41-214ENST00000490924 DAPK1P53355 1430 aa8.02□□□□□ -1.13
VPS41-214ENST00000490924 SHANK2Q9UPX8 1470 aa8.01□□□□□ -1.13
VPS41-214ENST00000490924 UPP2O95045 317 aa8.01□□□□□ -1.13
VPS41-214ENST00000490924 BMP1P13497 986 aa8.01□□□□□ -1.13
VPS41-214ENST00000490924 AGERQ15109 404 aa8.01□□□□□ -1.13
VPS41-214ENST00000490924 PTCRAQ6ISU1 281 aaPredicted RBP8.01□□□□□ -1.13
VPS41-214ENST00000490924 KDM2AQ9Y2K7 1162 aa8.01□□□□□ -1.13
VPS41-214ENST00000490924 KIAA0556O60303 1618 aa8□□□□□ -1.13
VPS41-214ENST00000490924 ADCY10Q96PN6 1610 aa8□□□□□ -1.13
VPS41-214ENST00000490924 ROCK2O75116 1388 aaKnown RBP8□□□□□ -1.13
VPS41-214ENST00000490924 KTN1Q86UP2 1357 aaKnown RBP8□□□□□ -1.13
VPS41-214ENST00000490924 SIAH2O43255 324 aa8□□□□□ -1.13
VPS41-214ENST00000490924 ZSCAN1Q8NBB4 408 aa8□□□□□ -1.13
VPS41-214ENST00000490924 SPIRE2Q8WWL2 714 aa8□□□□□ -1.13
VPS41-214ENST00000490924 BAP1Q92560 729 aa8□□□□□ -1.13
VPS41-214ENST00000490924 POLR1AO95602 1720 aaPredicted RBP8□□□□□ -1.13
VPS41-214ENST00000490924 WASHC2AQ641Q2 1341 aa8□□□□□ -1.13
VPS41-214ENST00000490924 FANCIQ9NVI1 1328 aa8□□□□□ -1.13
VPS41-214ENST00000490924 RIMBP3CA6NJZ7 1639 aa8□□□□□ -1.13
VPS41-214ENST00000490924 RIMBP3BA6NNM3 1639 aa8□□□□□ -1.13
VPS41-214ENST00000490924 RIMBP3Q9UFD9 1639 aa8□□□□□ -1.13
VPS41-214ENST00000490924 CCDC7Q96M83 1385 aa7.99□□□□□ -1.13
VPS41-214ENST00000490924 ABCC5O15440 1437 aa7.99□□□□□ -1.13
VPS41-214ENST00000490924 TROQ12816 1431 aaPredicted RBP7.99□□□□□ -1.13
VPS41-214ENST00000490924 NNTQ13423 1086 aa7.99□□□□□ -1.13
VPS41-214ENST00000490924 DESI1Q6ICB0 168 aa7.99□□□□□ -1.13
VPS41-214ENST00000490924 ZNF511Q8NB15 262 aa7.99□□□□□ -1.13
VPS41-214ENST00000490924 MPHOSPH9Q99550 1183 aa7.99□□□□□ -1.13
VPS41-214ENST00000490924 ATP1B4Q9UN42 357 aaPredicted RBP7.99□□□□□ -1.13
VPS41-214ENST00000490924 MAGI1Q96QZ7 1491 aaPredicted RBP7.99□□□□□ -1.13
VPS41-214ENST00000490924 MBD5Q9P267 1494 aa7.99□□□□□ -1.13
VPS41-214ENST00000490924 ZBED9Q6R2W3 1325 aa7.99□□□□□ -1.13
VPS41-214ENST00000490924 ITSN2Q9NZM3 1697 aa7.98□□□□□ -1.13
VPS41-214ENST00000490924 DISP1Q96F81 1524 aa7.98□□□□□ -1.13
VPS41-214ENST00000490924 ARHGEF12Q9NZN5 1544 aa7.98□□□□□ -1.13
VPS41-214ENST00000490924 UHRF1BP1Q6BDS2 1440 aa7.98□□□□□ -1.13
VPS41-214ENST00000490924 ADH1CP00326 375 aa7.98□□□□□ -1.13
VPS41-214ENST00000490924 ARID5BQ14865 1188 aa7.98□□□□□ -1.13
VPS41-214ENST00000490924 CYB5RLQ6IPT4 315 aa7.98□□□□□ -1.13
VPS41-214ENST00000490924 NUP153P49790 1475 aaKnown RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms