RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 LUC7LQ9NQ29 371 aaKnown RBP8.55□□□□□ -1.04
SYNE1-228ENST00000490135 PIP4K2AP48426 406 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-228ENST00000490135 G3BP1Q13283 466 aaKnown RBP eCLIP8.55□□□□□ -1.04
SYNE1-228ENST00000490135 TAX1BP1Q86VP1 789 aa8.55□□□□□ -1.04
SYNE1-228ENST00000490135 PAXBP1Q9Y5B6 917 aa8.55□□□□□ -1.04
SYNE1-228ENST00000490135 ZNF500O60304 480 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-228ENST00000490135 STAMBPO95630 424 aa8.55□□□□□ -1.04
SYNE1-228ENST00000490135 TRIM21P19474 475 aaKnown RBP8.55□□□□□ -1.04
SYNE1-228ENST00000490135 TXLNAP40222 546 aa8.55□□□□□ -1.04
SYNE1-228ENST00000490135 ZSCAN23Q3MJ62 389 aa8.55□□□□□ -1.04
SYNE1-228ENST00000490135 MTMR7Q9Y216 660 aa8.55□□□□□ -1.04
SYNE1-228ENST00000490135 FMNL3Q8IVF7 1028 aa8.55□□□□□ -1.04
SYNE1-228ENST00000490135 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.55□□□□□ -1.04
SYNE1-228ENST00000490135 ROCK2O75116 1388 aaKnown RBP8.55□□□□□ -1.04
SYNE1-228ENST00000490135 PPM1EQ8WY54 764 aa8.55□□□□□ -1.04
SYNE1-228ENST00000490135 ICE2Q659A1 982 aa8.54□□□□□ -1.04
SYNE1-228ENST00000490135 FILIP1Q7Z7B0 1213 aa8.54□□□□□ -1.04
SYNE1-228ENST00000490135 BCL2L12Q9HB09 334 aa8.54□□□□□ -1.04
SYNE1-228ENST00000490135 ZNHIT6Q9NWK9 470 aaKnown RBP8.54□□□□□ -1.04
SYNE1-228ENST00000490135 VPS8Q8N3P4 1428 aa8.54□□□□□ -1.04
SYNE1-228ENST00000490135 CASQ1P31415 396 aa8.54□□□□□ -1.04
SYNE1-228ENST00000490135 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.54□□□□□ -1.04
SYNE1-228ENST00000490135 SUFUQ9UMX1 484 aa8.54□□□□□ -1.04
SYNE1-228ENST00000490135 MYBBP1AQ9BQG0 1328 aaKnown RBP8.54□□□□□ -1.04
SYNE1-228ENST00000490135 CCDC146Q8IYE0 955 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 TRIM5Q9C035 493 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 ZSCAN20P17040 1043 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-228ENST00000490135 EIF2S2P20042 333 aaKnown RBP8.53□□□□□ -1.04
SYNE1-228ENST00000490135 SART3Q15020 963 aaKnown RBP8.53□□□□□ -1.04
SYNE1-228ENST00000490135 CCDC181Q5TID7 509 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 C16orf45Q96MC5 204 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-228ENST00000490135 SHTN1A0MZ66 631 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.53□□□□□ -1.04
SYNE1-228ENST00000490135 PHLDB1Q86UU1 1377 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 FSD2A1L4K1 749 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 ANAPC15P60006 121 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 TSC1Q92574 1164 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 SLC3A2P08195 630 aaKnown RBP8.53□□□□□ -1.04
SYNE1-228ENST00000490135 WASHC4Q2M389 1173 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 CCDC102AQ96A19 550 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 DNAI2Q9GZS0 605 aa8.53□□□□□ -1.04
SYNE1-228ENST00000490135 SDF4Q9BRK5 362 aa8.52□□□□□ -1.05
SYNE1-228ENST00000490135 K7ELQ4 463 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-228ENST00000490135 TMED8Q6PL24 325 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-228ENST00000490135 CEP63Q96MT8 703 aa8.52□□□□□ -1.05
SYNE1-228ENST00000490135 KIF15Q9NS87 1388 aa8.52□□□□□ -1.05
SYNE1-228ENST00000490135 KIF3BO15066 747 aa8.52□□□□□ -1.05
SYNE1-228ENST00000490135 ATP2B3Q16720 1220 aa8.52□□□□□ -1.05
SYNE1-228ENST00000490135 PANK3Q9H999 370 aa8.52□□□□□ -1.05
SYNE1-228ENST00000490135 RIOK3O14730 519 aaKnown RBP8.51□□□□□ -1.05
SYNE1-228ENST00000490135 ERC2O15083 957 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 SMC2O95347 1197 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 NBPF6Q5VWK0 638 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 CEP135Q66GS9 1140 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 NBPF5PQ86XG9 351 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-228ENST00000490135 NBPF4Q96M43 638 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 ERLIN1O75477 346 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 KLHL40Q2TBA0 621 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 UBXN4Q92575 508 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 GTF3C6Q969F1 213 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 DDX23Q9BUQ8 820 aaKnown RBP8.51□□□□□ -1.05
SYNE1-228ENST00000490135 ERBB4Q15303 1308 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 BRPF1P55201 1214 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-228ENST00000490135 PTPN14Q15678 1187 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 RNF216Q9NWF9 866 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-228ENST00000490135 ADCY5O95622 1261 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 NCAPGQ9BPX3 1015 aa8.51□□□□□ -1.05
SYNE1-228ENST00000490135 NUTM2FA1L443 756 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 C8orf34Q49A92 452 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 SPATA24Q86W54 205 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 PPP1R9BQ96SB3 815 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 JRKLQ9Y4A0 524 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 SMTNL1A8MU46 457 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 LRSAM1Q6UWE0 723 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 ROCK1Q13464 1354 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 ELL2O00472 640 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-228ENST00000490135 ZKSCAN2Q63HK3 967 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 COG3Q96JB2 828 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 CALR3Q96L12 384 aaKnown RBP8.5□□□□□ -1.05
SYNE1-228ENST00000490135 WDR97A6NE52 1622 aa8.5□□□□□ -1.05
SYNE1-228ENST00000490135 CCDC196A0A1B0GTZ2 297 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 MATR3P43243 847 aaKnown RBP eCLIP8.49□□□□□ -1.05
SYNE1-228ENST00000490135 CLNS1AP54105 237 aaKnown RBP8.49□□□□□ -1.05
SYNE1-228ENST00000490135 CCDC184Q52MB2 194 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 COG6Q9Y2V7 657 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 A0A1B0GUA9 196 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 NUP133Q8WUM0 1156 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 NEUROD6Q96NK8 337 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 TANGO6Q9C0B7 1094 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 USP25Q9UHP3 1055 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 TBC1D2BQ9UPU7 963 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 SSFA2P28290 1259 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 STIM1Q13586 685 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 NAA25Q14CX7 972 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 KIF18AQ8NI77 898 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 V9GYY5 206 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-228ENST00000490135 ZNF513Q8N8E2 541 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-228ENST00000490135 ZHX3Q9H4I2 956 aa8.49□□□□□ -1.05
SYNE1-228ENST00000490135 RBM27Q9P2N5 1060 aaKnown RBP8.49□□□□□ -1.05
SYNE1-228ENST00000490135 PSMA5P28066 241 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms