RNA–Protein interactions for RNA: ENST00000489614.5

NOD1-208, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

TSL 2

Gene NOD1, Length 3,098 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-208ENST00000489614 RGS3P49796 1198 aa12.77□□□□□ -0.36
NOD1-208ENST00000489614 ZNF521Q96K83 1311 aa12.76□□□□□ -0.37
NOD1-208ENST00000489614 SLC4A3P48751 1232 aa12.76□□□□□ -0.37
NOD1-208ENST00000489614 AHDC1Q5TGY3 1603 aaPredicted RBP12.76□□□□□ -0.37
NOD1-208ENST00000489614 MORC1Q86VD1 984 aa12.75□□□□□ -0.37
NOD1-208ENST00000489614 LRRC37A3O60309 1634 aa12.75□□□□□ -0.37
NOD1-208ENST00000489614 NCBP3Q53F19 620 aaKnown RBP12.75□□□□□ -0.37
NOD1-208ENST00000489614 NME9Q86XW9 330 aa12.75□□□□□ -0.37
NOD1-208ENST00000489614 C19orf44Q9H6X5 657 aa12.75□□□□□ -0.37
NOD1-208ENST00000489614 NCAPD2Q15021 1401 aa12.74□□□□□ -0.37
NOD1-208ENST00000489614 ARXQ96QS3 562 aa12.74□□□□□ -0.37
NOD1-208ENST00000489614 GGNBP2Q9H3C7 697 aa12.74□□□□□ -0.37
NOD1-208ENST00000489614 KIF24Q5T7B8 1368 aa12.74□□□□□ -0.37
NOD1-208ENST00000489614 ZRANB1Q9UGI0 708 aa12.73□□□□□ -0.37
NOD1-208ENST00000489614 ROBO1Q9Y6N7 1651 aa12.73□□□□□ -0.37
NOD1-208ENST00000489614 POLKQ9UBT6 870 aa12.73□□□□□ -0.37
NOD1-208ENST00000489614 USP19O94966 1318 aa12.72□□□□□ -0.37
NOD1-208ENST00000489614 ADAMTS7Q9UKP4 1686 aa12.72□□□□□ -0.37
NOD1-208ENST00000489614 SBNO1A3KN83 1393 aa12.72□□□□□ -0.37
NOD1-208ENST00000489614 PNNQ9H307 717 aaKnown RBP12.72□□□□□ -0.37
NOD1-208ENST00000489614 ADAMTS8Q9UP79 889 aa12.72□□□□□ -0.37
NOD1-208ENST00000489614 MTHFSP49914 203 aa12.71□□□□□ -0.37
NOD1-208ENST00000489614 FAM9BQ8IZU0 186 aa12.71□□□□□ -0.37
NOD1-208ENST00000489614 PHF8Q9UPP1 1060 aa12.71□□□□□ -0.37
NOD1-208ENST00000489614 ZNF335Q9H4Z2 1342 aaPredicted RBP12.71□□□□□ -0.37
NOD1-208ENST00000489614 PROSER2Q86WR7 435 aaPredicted RBP12.7□□□□□ -0.38
NOD1-208ENST00000489614 PLEKHF1Q96S99 279 aa12.7□□□□□ -0.38
NOD1-208ENST00000489614 WNK3Q9BYP7 1800 aa12.7□□□□□ -0.38
NOD1-208ENST00000489614 RTL1A6NKG5 1358 aa12.7□□□□□ -0.38
NOD1-208ENST00000489614 RBM33Q96EV2 1170 aaKnown RBP12.69□□□□□ -0.38
NOD1-208ENST00000489614 MSH6P52701 1360 aa12.68□□□□□ -0.38
NOD1-208ENST00000489614 COL16A1Q07092 1604 aaPredicted RBP12.68□□□□□ -0.38
NOD1-208ENST00000489614 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.68□□□□□ -0.38
NOD1-208ENST00000489614 PMFBP1Q8TBY8 1022 aa12.68□□□□□ -0.38
NOD1-208ENST00000489614 SIPA1L3O60292 1781 aaPredicted RBP12.68□□□□□ -0.38
NOD1-208ENST00000489614 IL13P35225 146 aa12.67□□□□□ -0.38
NOD1-208ENST00000489614 DMRT2Q9Y5R5 561 aa12.67□□□□□ -0.38
NOD1-208ENST00000489614 PKD1L3Q7Z443 1732 aa12.67□□□□□ -0.38
NOD1-208ENST00000489614 TNS3Q68CZ2 1445 aa12.67□□□□□ -0.38
NOD1-208ENST00000489614 ORAI2Q96SN7 254 aa12.67□□□□□ -0.38
NOD1-208ENST00000489614 SENP3-EIF4A1A0A087X0R7 540 aa12.66□□□□□ -0.38
NOD1-208ENST00000489614 FRAT2O75474 233 aaPredicted RBP12.66□□□□□ -0.38
NOD1-208ENST00000489614 TRMT2AQ8IZ69 625 aaKnown RBP12.66□□□□□ -0.38
NOD1-208ENST00000489614 SHANK3Q9BYB0 1731 aa12.66□□□□□ -0.38
NOD1-208ENST00000489614 COG3Q96JB2 828 aa12.66□□□□□ -0.38
NOD1-208ENST00000489614 KDRP35968 1356 aa12.65□□□□□ -0.38
NOD1-208ENST00000489614 RNF123Q5XPI4 1314 aa12.65□□□□□ -0.38
NOD1-208ENST00000489614 NUTM2FA1L443 756 aa12.65□□□□□ -0.38
NOD1-208ENST00000489614 PDE4AP27815 886 aa12.65□□□□□ -0.38
NOD1-208ENST00000489614 BBXQ8WY36 941 aaPredicted RBP12.65□□□□□ -0.38
NOD1-208ENST00000489614 PRDM4Q9UKN5 801 aa12.65□□□□□ -0.38
NOD1-208ENST00000489614 PLCH1Q4KWH8 1693 aa12.64□□□□□ -0.39
NOD1-208ENST00000489614 CNGB1Q14028 1251 aaPredicted RBP12.64□□□□□ -0.39
NOD1-208ENST00000489614 CADPS2Q86UW7 1296 aa12.64□□□□□ -0.39
NOD1-208ENST00000489614 NGEFQ8N5V2 710 aa12.64□□□□□ -0.39
NOD1-208ENST00000489614 ARHGEF10O15013 1369 aa12.63□□□□□ -0.39
NOD1-208ENST00000489614 CCDC27Q2M243 656 aa12.63□□□□□ -0.39
NOD1-208ENST00000489614 CHMP4BQ9H444 224 aaKnown RBP12.63□□□□□ -0.39
NOD1-208ENST00000489614 EMILIN1Q9Y6C2 1016 aa12.63□□□□□ -0.39
NOD1-208ENST00000489614 PHLPP1O60346 1717 aa12.63□□□□□ -0.39
NOD1-208ENST00000489614 NRAPQ86VF7 1730 aa12.63□□□□□ -0.39
NOD1-208ENST00000489614 FLT4P35916 1363 aa12.63□□□□□ -0.39
NOD1-208ENST00000489614 FBLN1P23142 703 aa12.63□□□□□ -0.39
NOD1-208ENST00000489614 SOS2Q07890 1332 aaPredicted RBP12.63□□□□□ -0.39
NOD1-208ENST00000489614 PARP4Q9UKK3 1724 aaKnown RBP12.63□□□□□ -0.39
NOD1-208ENST00000489614 NGDNQ8NEJ9 315 aaKnown RBP12.63□□□□□ -0.39
NOD1-208ENST00000489614 MAP3K19Q56UN5 1328 aa12.62□□□□□ -0.39
NOD1-208ENST00000489614 PAXIP1Q6ZW49 1069 aaPredicted RBP12.62□□□□□ -0.39
NOD1-208ENST00000489614 PDE3BQ13370 1112 aa12.61□□□□□ -0.39
NOD1-208ENST00000489614 ESCO1Q5FWF5 840 aa12.61□□□□□ -0.39
NOD1-208ENST00000489614 BRINP3Q76B58 766 aa12.61□□□□□ -0.39
NOD1-208ENST00000489614 CFAP53Q96M91 514 aa12.61□□□□□ -0.39
NOD1-208ENST00000489614 KDM3BQ7LBC6 1761 aa12.61□□□□□ -0.39
NOD1-208ENST00000489614 TNNT2P45379 298 aaPredicted RBP12.6□□□□□ -0.39
NOD1-208ENST00000489614 WDR43Q15061 677 aaKnown RBP eCLIP12.6□□□□□ -0.39
NOD1-208ENST00000489614 RUNDC1Q96C34 613 aa12.6□□□□□ -0.39
NOD1-208ENST00000489614 CPDO75976 1380 aa12.6□□□□□ -0.39
NOD1-208ENST00000489614 COL14A1Q05707 1796 aaKnown RBP12.59□□□□□ -0.39
NOD1-208ENST00000489614 DIAPH1O60610 1272 aaKnown RBP12.59□□□□□ -0.39
NOD1-208ENST00000489614 NAP1L2Q9ULW6 460 aaPredicted RBP12.59□□□□□ -0.39
NOD1-208ENST00000489614 SPATA31A3Q5VYP0 1347 aa12.59□□□□□ -0.39
NOD1-208ENST00000489614 IGSF1Q8N6C5 1336 aa12.59□□□□□ -0.39
NOD1-208ENST00000489614 PLEKHG2Q9H7P9 1386 aa12.59□□□□□ -0.39
NOD1-208ENST00000489614 SCN11AQ9UI33 1791 aa12.59□□□□□ -0.39
NOD1-208ENST00000489614 ATF3P18847 181 aa12.58□□□□□ -0.39
NOD1-208ENST00000489614 EIF4A2Q14240 407 aaKnown RBP12.58□□□□□ -0.39
NOD1-208ENST00000489614 RRS1Q15050 365 aaKnown RBP12.58□□□□□ -0.39
NOD1-208ENST00000489614 NUDCQ9Y266 331 aa12.58□□□□□ -0.4
NOD1-208ENST00000489614 KRT28Q7Z3Y7 464 aa12.58□□□□□ -0.4
NOD1-208ENST00000489614 NPHP3Q7Z494 1330 aa12.57□□□□□ -0.4
NOD1-208ENST00000489614 FCHSD2O94868 740 aa12.57□□□□□ -0.4
NOD1-208ENST00000489614 KLHL34Q8N239 644 aa12.57□□□□□ -0.4
NOD1-208ENST00000489614 N4BP2Q86UW6 1770 aaPredicted RBP12.57□□□□□ -0.4
NOD1-208ENST00000489614 NWD2Q9ULI1 1742 aa12.57□□□□□ -0.4
NOD1-208ENST00000489614 HOXC9P31274 260 aa12.56□□□□□ -0.4
NOD1-208ENST00000489614 BACH2Q9BYV9 841 aa12.56□□□□□ -0.4
NOD1-208ENST00000489614 CALD1Q05682 793 aaKnown RBP12.56□□□□□ -0.4
NOD1-208ENST00000489614 ARID3AQ99856 593 aa12.56□□□□□ -0.4
NOD1-208ENST00000489614 TAF7LQ5H9L4 462 aa12.56□□□□□ -0.4
NOD1-208ENST00000489614 SLAIN2Q9P270 581 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms