RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 KDRP35968 1356 aa15.24■□□□□ 0.03
C9orf3-220ENST00000489318 GCP02774 474 aa15.24■□□□□ 0.03
C9orf3-220ENST00000489318 U2AF1L5P0DN76 240 aaPredicted RBP15.24■□□□□ 0.03
C9orf3-220ENST00000489318 HOXC9P31274 260 aa15.24■□□□□ 0.03
C9orf3-220ENST00000489318 U2AF1Q01081 240 aaKnown RBP eCLIP15.24■□□□□ 0.03
C9orf3-220ENST00000489318 EIF4A2Q14240 407 aaKnown RBP15.24■□□□□ 0.03
C9orf3-220ENST00000489318 PLEKHF1Q96S99 279 aa15.24■□□□□ 0.03
C9orf3-220ENST00000489318 CPDO75976 1380 aa15.24■□□□□ 0.03
C9orf3-220ENST00000489318 FCHSD2O94868 740 aa15.23■□□□□ 0.03
C9orf3-220ENST00000489318 HSP90AB2PQ58FF8 381 aa15.23■□□□□ 0.03
C9orf3-220ENST00000489318 ARHGEF25Q86VW2 580 aa15.23■□□□□ 0.03
C9orf3-220ENST00000489318 RSPH6AQ9H0K4 717 aa15.23■□□□□ 0.03
C9orf3-220ENST00000489318 RGPD2P0DJD1 1756 aa15.23■□□□□ 0.03
C9orf3-220ENST00000489318 DLG5Q8TDM6 1919 aa15.23■□□□□ 0.03
C9orf3-220ENST00000489318 IGSF1Q8N6C5 1336 aa15.22■□□□□ 0.03
C9orf3-220ENST00000489318 U2SURPO15042 1029 aaKnown RBP15.22■□□□□ 0.03
C9orf3-220ENST00000489318 SOX12O15370 315 aa15.22■□□□□ 0.03
C9orf3-220ENST00000489318 CCDC146Q8IYE0 955 aa15.22■□□□□ 0.03
C9orf3-220ENST00000489318 IP6K1Q92551 441 aa15.22■□□□□ 0.03
C9orf3-220ENST00000489318 PHF23Q9BUL5 403 aaPredicted RBP15.22■□□□□ 0.03
C9orf3-220ENST00000489318 AMPHP49418 695 aa15.21■□□□□ 0.03
C9orf3-220ENST00000489318 PDE3BQ13370 1112 aa15.21■□□□□ 0.03
C9orf3-220ENST00000489318 PNNQ9H307 717 aaKnown RBP15.21■□□□□ 0.03
C9orf3-220ENST00000489318 APAF1O14727 1248 aa15.2■□□□□ 0.02
C9orf3-220ENST00000489318 CCDC27Q2M243 656 aa15.19■□□□□ 0.02
C9orf3-220ENST00000489318 LMOD2Q6P5Q4 547 aa15.19■□□□□ 0.02
C9orf3-220ENST00000489318 TOM1O60784 492 aa15.18■□□□□ 0.02
C9orf3-220ENST00000489318 TCP11L2Q8N4U5 519 aa15.18■□□□□ 0.02
C9orf3-220ENST00000489318 MAPK8IP3Q9UPT6 1336 aa15.17■□□□□ 0.02
C9orf3-220ENST00000489318 COL14A1Q05707 1796 aaKnown RBP15.16■□□□□ 0.02
C9orf3-220ENST00000489318 PRKAR2BP31323 418 aa15.16■□□□□ 0.02
C9orf3-220ENST00000489318 PLEKHG2Q9H7P9 1386 aa15.15■□□□□ 0.02
C9orf3-220ENST00000489318 LRRC37A3O60309 1634 aa15.15■□□□□ 0.02
C9orf3-220ENST00000489318 LRRC59Q96AG4 307 aaKnown RBP15.15■□□□□ 0.02
C9orf3-220ENST00000489318 ERBB3P21860 1342 aa15.15■□□□□ 0.02
C9orf3-220ENST00000489318 KIAA0232Q92628 1395 aa15.14■□□□□ 0.01
C9orf3-220ENST00000489318 HMOX1P09601 288 aa15.14■□□□□ 0.01
C9orf3-220ENST00000489318 TMPOP42166 694 aaKnown RBP15.14■□□□□ 0.01
C9orf3-220ENST00000489318 EYA1Q99502 592 aa15.14■□□□□ 0.01
C9orf3-220ENST00000489318 SENP3-EIF4A1A0A087X0R7 540 aa15.13■□□□□ 0.01
C9orf3-220ENST00000489318 SULT6B1Q6IMI4 303 aa15.13■□□□□ 0.01
C9orf3-220ENST00000489318 AEBP1Q8IUX7 1158 aa15.13■□□□□ 0.01
C9orf3-220ENST00000489318 WWC1Q8IX03 1113 aa15.13■□□□□ 0.01
C9orf3-220ENST00000489318 PLCH1Q4KWH8 1693 aa15.12■□□□□ 0.01
C9orf3-220ENST00000489318 CERKQ8TCT0 537 aa15.12■□□□□ 0.01
C9orf3-220ENST00000489318 CABLES1Q8TDN4 633 aa15.12■□□□□ 0.01
C9orf3-220ENST00000489318 COL5A2P05997 1499 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-220ENST00000489318 PKD1L3Q7Z443 1732 aa15.12■□□□□ 0.01
C9orf3-220ENST00000489318 NEFMP07197 916 aa15.11■□□□□ 0.01
C9orf3-220ENST00000489318 ZC3H6P61129 1189 aaKnown RBP15.11■□□□□ 0.01
C9orf3-220ENST00000489318 GOLGA2Q08379 1002 aa15.11■□□□□ 0.01
C9orf3-220ENST00000489318 NFE2L2Q16236 605 aa15.11■□□□□ 0.01
C9orf3-220ENST00000489318 TRMT2AQ8IZ69 625 aaKnown RBP15.11■□□□□ 0.01
C9orf3-220ENST00000489318 PHACTR3Q96KR7 559 aa15.11■□□□□ 0.01
C9orf3-220ENST00000489318 AXIN2Q9Y2T1 843 aa15.11■□□□□ 0.01
C9orf3-220ENST00000489318 SALL2Q9Y467 1007 aaPredicted RBP15.11■□□□□ 0.01
C9orf3-220ENST00000489318 NRAPQ86VF7 1730 aa15.11■□□□□ 0.01
C9orf3-220ENST00000489318 PARP4Q9UKK3 1724 aaKnown RBP15.1■□□□□ 0.01
C9orf3-220ENST00000489318 WDR63Q8IWG1 891 aa15.1■□□□□ 0.01
C9orf3-220ENST00000489318 ANKRD24Q8TF21 1146 aa15.1■□□□□ 0.01
C9orf3-220ENST00000489318 TRIM35Q9UPQ4 493 aa15.1■□□□□ 0.01
C9orf3-220ENST00000489318 ADAMTS7Q9UKP4 1686 aa15.09■□□□□ 0.01
C9orf3-220ENST00000489318 NWD2Q9ULI1 1742 aa15.09■□□□□ 0.01
C9orf3-220ENST00000489318 VIRMAQ69YN4 1812 aaKnown RBP15.09■□□□□ 0.01
C9orf3-220ENST00000489318 WNK3Q9BYP7 1800 aa15.09■□□□□ 0.01
C9orf3-220ENST00000489318 UBAP1LF5GYI3 381 aa15.09■□□□□ 0.01
C9orf3-220ENST00000489318 SLFN5Q08AF3 891 aa15.09■□□□□ 0.01
C9orf3-220ENST00000489318 CDCA7LQ96GN5 454 aa15.09■□□□□ 0.01
C9orf3-220ENST00000489318 RRP7AQ9Y3A4 280 aaKnown RBP15.09■□□□□ 0.01
C9orf3-220ENST00000489318 E9PSI1 815 aa15.08■□□□□ 0
C9orf3-220ENST00000489318 NBPF6Q5VWK0 638 aa15.08■□□□□ 0
C9orf3-220ENST00000489318 DUSP27Q5VZP5 1158 aa15.08■□□□□ 0
C9orf3-220ENST00000489318 NBPF4Q96M43 638 aa15.08■□□□□ 0
C9orf3-220ENST00000489318 IL16Q14005 1332 aa15.08■□□□□ 0
C9orf3-220ENST00000489318 ZBTB7CA1YPR0 619 aa15.06■□□□□ 0
C9orf3-220ENST00000489318 RIPK4P57078 832 aa15.06■□□□□ 0
C9orf3-220ENST00000489318 LMOD3Q0VAK6 560 aa15.06■□□□□ 0
C9orf3-220ENST00000489318 LTV1Q96GA3 475 aaPredicted RBP15.06■□□□□ 0
C9orf3-220ENST00000489318 PRDM11Q9NQV5 511 aa15.06■□□□□ 0
C9orf3-220ENST00000489318 PLEKHG5O94827 1062 aa15.05■□□□□ -0
C9orf3-220ENST00000489318 NEUROD2Q15784 382 aa15.05■□□□□ -0
C9orf3-220ENST00000489318 SPINK5Q9NQ38 1064 aaPredicted RBP15.05■□□□□ -0
C9orf3-220ENST00000489318 SHANK3Q9BYB0 1731 aa15.04■□□□□ -0
C9orf3-220ENST00000489318 WDR17Q8IZU2 1322 aa15.04■□□□□ -0
C9orf3-220ENST00000489318 PIP4K2BP78356 416 aa15.04■□□□□ -0
C9orf3-220ENST00000489318 CHRNA2Q15822 529 aa15.04■□□□□ -0
C9orf3-220ENST00000489318 GAS2L2Q8NHY3 880 aa15.04■□□□□ -0
C9orf3-220ENST00000489318 MEGF6O75095 1541 aa15.03■□□□□ -0
C9orf3-220ENST00000489318 OVOS2A0A0G2JMS6 1433 aa15.03■□□□□ -0
C9orf3-220ENST00000489318 JCADQ9P266 1359 aa15.03■□□□□ -0
C9orf3-220ENST00000489318 RNF123Q5XPI4 1314 aa15.03■□□□□ -0
C9orf3-220ENST00000489318 HAP1P54257 671 aaPredicted RBP15.03■□□□□ -0
C9orf3-220ENST00000489318 SIPA1L3O60292 1781 aaPredicted RBP15.03■□□□□ -0
C9orf3-220ENST00000489318 MTHFSDQ2M296 383 aaKnown RBP15.02■□□□□ -0
C9orf3-220ENST00000489318 USHBP1Q8N6Y0 703 aa15.02■□□□□ -0
C9orf3-220ENST00000489318 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.02□□□□□ -0.01
C9orf3-220ENST00000489318 SCN11AQ9UI33 1791 aa15.01□□□□□ -0.01
C9orf3-220ENST00000489318 MAP3K5Q99683 1374 aa15.01□□□□□ -0.01
C9orf3-220ENST00000489318 HTATSF1O43719 755 aaKnown RBP15.01□□□□□ -0.01
C9orf3-220ENST00000489318 CALD1Q05682 793 aaKnown RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms