RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 NPAS3Q8IXF0 933 aa8.64□□□□□ -1.03
XRN1-213ENST00000489241 CCDC116Q8IYX3 515 aa8.64□□□□□ -1.03
XRN1-213ENST00000489241 MEIOBQ8N635 442 aa8.64□□□□□ -1.03
XRN1-213ENST00000489241 SLC10A4Q96EP9 437 aa8.64□□□□□ -1.03
XRN1-213ENST00000489241 CDV3Q9UKY7 258 aaKnown RBP8.64□□□□□ -1.03
XRN1-213ENST00000489241 RFC5P40937 340 aa8.63□□□□□ -1.03
XRN1-213ENST00000489241 LCE2CQ5TA81 110 aa8.63□□□□□ -1.03
XRN1-213ENST00000489241 PNMA1Q8ND90 353 aa8.63□□□□□ -1.03
XRN1-213ENST00000489241 SLC16A10Q8TF71 515 aa8.63□□□□□ -1.03
XRN1-213ENST00000489241 GPSM3Q9Y4H4 160 aa8.63□□□□□ -1.03
XRN1-213ENST00000489241 EMILIN1Q9Y6C2 1016 aa8.63□□□□□ -1.03
XRN1-213ENST00000489241 UPP2O95045 317 aa8.62□□□□□ -1.03
XRN1-213ENST00000489241 PTK2Q05397 1052 aa8.62□□□□□ -1.03
XRN1-213ENST00000489241 ZBTB33Q86T24 672 aa8.62□□□□□ -1.03
XRN1-213ENST00000489241 LINC00528Q8N1L1 170 aa8.62□□□□□ -1.03
XRN1-213ENST00000489241 PCMTD1Q96MG8 357 aaPredicted RBP8.62□□□□□ -1.03
XRN1-213ENST00000489241 HMX1Q9NP08 348 aaPredicted RBP8.62□□□□□ -1.03
XRN1-213ENST00000489241 C6orf118Q5T5N4 469 aa8.61□□□□□ -1.03
XRN1-213ENST00000489241 C14orf37Q86TY3 774 aa8.61□□□□□ -1.03
XRN1-213ENST00000489241 BMP2P12643 396 aa8.6□□□□□ -1.03
XRN1-213ENST00000489241 INSM1Q01101 510 aaPredicted RBP8.6□□□□□ -1.03
XRN1-213ENST00000489241 EPS8L1Q8TE68 723 aa8.6□□□□□ -1.03
XRN1-213ENST00000489241 OCSTAMPQ9BR26 566 aa8.6□□□□□ -1.03
XRN1-213ENST00000489241 H3BM21 787 aa8.59□□□□□ -1.03
XRN1-213ENST00000489241 PPP1R26Q5T8A7 1209 aaPredicted RBP8.59□□□□□ -1.03
XRN1-213ENST00000489241 KCTD15Q96SI1 283 aaPredicted RBP8.59□□□□□ -1.03
XRN1-213ENST00000489241 PGPEP1Q9NXJ5 209 aa8.59□□□□□ -1.03
XRN1-213ENST00000489241 SOBPA7XYQ1 873 aa8.58□□□□□ -1.04
XRN1-213ENST00000489241 ADAM32Q8TC27 787 aa8.58□□□□□ -1.04
XRN1-213ENST00000489241 IRF7Q92985 503 aa8.58□□□□□ -1.04
XRN1-213ENST00000489241 TSEN34Q9BSV6 310 aaKnown RBP8.58□□□□□ -1.04
XRN1-213ENST00000489241 MAN1A2O60476 641 aa8.57□□□□□ -1.04
XRN1-213ENST00000489241 VEGFBP49765 207 aa8.57□□□□□ -1.04
XRN1-213ENST00000489241 DHX9Q08211 1270 aaKnown RBP8.57□□□□□ -1.04
XRN1-213ENST00000489241 NBPF20Q3BBV1 942 aa8.57□□□□□ -1.04
XRN1-213ENST00000489241 TMEM259Q4ZIN3 620 aa8.57□□□□□ -1.04
XRN1-213ENST00000489241 INTS6LQ5JSJ4 861 aaKnown RBP8.57□□□□□ -1.04
XRN1-213ENST00000489241 Q6ZVU0 165 aa8.55□□□□□ -1.04
XRN1-213ENST00000489241 TRIM34Q9BYJ4 488 aa8.55□□□□□ -1.04
XRN1-213ENST00000489241 SOS2Q07890 1332 aaPredicted RBP8.54□□□□□ -1.04
XRN1-213ENST00000489241 STK17AQ9UEE5 414 aa8.54□□□□□ -1.04
XRN1-213ENST00000489241 GMPRP36959 345 aa8.53□□□□□ -1.04
XRN1-213ENST00000489241 CBLBQ13191 982 aa8.53□□□□□ -1.04
XRN1-213ENST00000489241 DZIP3Q86Y13 1208 aaKnown RBP8.53□□□□□ -1.04
XRN1-213ENST00000489241 ERBB4Q15303 1308 aa8.53□□□□□ -1.04
XRN1-213ENST00000489241 DNMT3LQ9UJW3 386 aa8.52□□□□□ -1.05
XRN1-213ENST00000489241 VSIG8P0DPA2 414 aa8.51□□□□□ -1.05
XRN1-213ENST00000489241 TTLL8A6PVC2 850 aa8.5□□□□□ -1.05
XRN1-213ENST00000489241 SPINT1O43278 529 aa8.5□□□□□ -1.05
XRN1-213ENST00000489241 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.5□□□□□ -1.05
XRN1-213ENST00000489241 GJD4Q96KN9 370 aaPredicted RBP8.5□□□□□ -1.05
XRN1-213ENST00000489241 ESPNB1AK53 854 aa8.49□□□□□ -1.05
XRN1-213ENST00000489241 ZBBXA8MT70 800 aa8.48□□□□□ -1.05
XRN1-213ENST00000489241 SOCS7O14512 581 aa8.48□□□□□ -1.05
XRN1-213ENST00000489241 RAB15P59190 212 aa8.48□□□□□ -1.05
XRN1-213ENST00000489241 ZNF784Q8NCA9 323 aaPredicted RBP8.48□□□□□ -1.05
XRN1-213ENST00000489241 ARXQ96QS3 562 aa8.48□□□□□ -1.05
XRN1-213ENST00000489241 PPFIA3O75145 1194 aa8.47□□□□□ -1.05
XRN1-213ENST00000489241 SEPT12Q8IYM1 358 aa8.47□□□□□ -1.05
XRN1-213ENST00000489241 BANK1Q8NDB2 785 aa8.47□□□□□ -1.05
XRN1-213ENST00000489241 TMPRSS4Q9NRS4 437 aa8.47□□□□□ -1.05
XRN1-213ENST00000489241 ERVH48-1M5A8F1 160 aa8.46□□□□□ -1.06
XRN1-213ENST00000489241 RELBQ01201 579 aa8.46□□□□□ -1.06
XRN1-213ENST00000489241 AGBL1Q96MI9 1066 aa8.46□□□□□ -1.06
XRN1-213ENST00000489241 ADH1AP07327 375 aa8.45□□□□□ -1.06
XRN1-213ENST00000489241 FBXO45P0C2W1 286 aa8.45□□□□□ -1.06
XRN1-213ENST00000489241 ZSCAN1Q8NBB4 408 aa8.45□□□□□ -1.06
XRN1-213ENST00000489241 TRIM52Q96A61 297 aa8.45□□□□□ -1.06
XRN1-213ENST00000489241 FAM181BA6NEQ2 426 aa8.44□□□□□ -1.06
XRN1-213ENST00000489241 FIGNL2A6NMB9 653 aa8.44□□□□□ -1.06
XRN1-213ENST00000489241 LILRA1O75019 489 aa8.44□□□□□ -1.06
XRN1-213ENST00000489241 PTSQ03393 145 aa8.44□□□□□ -1.06
XRN1-213ENST00000489241 PCDHB9Q9Y5E1 797 aa8.44□□□□□ -1.06
XRN1-213ENST00000489241 APBB1O00213 710 aa8.43□□□□□ -1.06
XRN1-213ENST00000489241 LORP23490 312 aaPredicted RBP8.43□□□□□ -1.06
XRN1-213ENST00000489241 CTSOP43234 321 aaPredicted RBP8.43□□□□□ -1.06
XRN1-213ENST00000489241 MTMR14Q8NCE2 650 aa8.43□□□□□ -1.06
XRN1-213ENST00000489241 INSM2Q96T92 566 aaPredicted RBP8.43□□□□□ -1.06
XRN1-213ENST00000489241 POLMQ9NP87 494 aaPredicted RBP8.43□□□□□ -1.06
XRN1-213ENST00000489241 NR1H3Q13133 447 aa8.42□□□□□ -1.06
XRN1-213ENST00000489241 CCDC125Q86Z20 511 aa8.42□□□□□ -1.06
XRN1-213ENST00000489241 ZNF592Q92610 1267 aa8.42□□□□□ -1.06
XRN1-213ENST00000489241 NDUFB9Q9Y6M9 179 aa8.42□□□□□ -1.06
XRN1-213ENST00000489241 GPR37L1O60883 481 aa8.41□□□□□ -1.06
XRN1-213ENST00000489241 ADD1P35611 737 aaKnown RBP8.41□□□□□ -1.06
XRN1-213ENST00000489241 FLIIQ13045 1269 aa8.41□□□□□ -1.06
XRN1-213ENST00000489241 RNF217Q8TC41 542 aa8.41□□□□□ -1.06
XRN1-213ENST00000489241 ZNF395Q9H8N7 513 aaPredicted RBP8.41□□□□□ -1.06
XRN1-213ENST00000489241 CYLDQ9NQC7 956 aa8.41□□□□□ -1.06
XRN1-213ENST00000489241 GIGYF1O75420 1035 aaPredicted RBP8.4□□□□□ -1.06
XRN1-213ENST00000489241 PTGIRP43119 386 aa8.4□□□□□ -1.06
XRN1-213ENST00000489241 MCCD1P59942 119 aaPredicted RBP8.4□□□□□ -1.06
XRN1-213ENST00000489241 CCDC155Q8N6L0 562 aa8.4□□□□□ -1.06
XRN1-213ENST00000489241 ZNF330Q9Y3S2 320 aaPredicted RBP8.4□□□□□ -1.06
XRN1-213ENST00000489241 SUPT5HO00267 1087 aaKnown RBP8.39□□□□□ -1.07
XRN1-213ENST00000489241 KDF1Q8NAX2 398 aaPredicted RBP8.39□□□□□ -1.07
XRN1-213ENST00000489241 SLC35F4A4IF30 521 aa8.38□□□□□ -1.07
XRN1-213ENST00000489241 RNF20Q5VTR2 975 aa8.38□□□□□ -1.07
XRN1-213ENST00000489241 FOXD4L5Q5VV16 416 aaPredicted RBP8.38□□□□□ -1.07
XRN1-213ENST00000489241 SNRKQ9NRH2 765 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms