RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 EZH2Q15910 746 aaKnown RBP31.86■■■□□ 2.69
PTPN4-211ENST00000488279 CD163L1Q9NR16 1453 aa31.85■■■□□ 2.69
PTPN4-211ENST00000488279 USP31Q70CQ4 1352 aa31.85■■■□□ 2.69
PTPN4-211ENST00000488279 C11orf95C9JLR9 678 aaPredicted RBP31.85■■■□□ 2.69
PTPN4-211ENST00000488279 CSB-PGBD3P0DP91 1061 aa31.85■■■□□ 2.69
PTPN4-211ENST00000488279 NME9Q86XW9 330 aa31.85■■■□□ 2.69
PTPN4-211ENST00000488279 TESK2Q96S53 571 aa31.85■■■□□ 2.69
PTPN4-211ENST00000488279 CAMKK2Q96RR4 588 aa31.84■■■□□ 2.69
PTPN4-211ENST00000488279 PSDA5PKW4 1024 aaPredicted RBP31.83■■■□□ 2.69
PTPN4-211ENST00000488279 DDB1Q16531 1140 aa31.83■■■□□ 2.69
PTPN4-211ENST00000488279 COL18A1P39060 1754 aa31.82■■■□□ 2.68
PTPN4-211ENST00000488279 CDCA7Q9BWT1 371 aaPredicted RBP31.82■■■□□ 2.68
PTPN4-211ENST00000488279 CARD10Q9BWT7 1032 aa31.82■■■□□ 2.68
PTPN4-211ENST00000488279 EDC4Q6P2E9 1401 aaKnown RBP31.8■■■□□ 2.68
PTPN4-211ENST00000488279 MON2Q7Z3U7 1717 aa31.8■■■□□ 2.68
PTPN4-211ENST00000488279 NFAT5O94916 1531 aa31.79■■■□□ 2.68
PTPN4-211ENST00000488279 A0A1W2PP64 1363 aa31.78■■■□□ 2.68
PTPN4-211ENST00000488279 PARD3Q8TEW0 1356 aa31.78■■■□□ 2.68
PTPN4-211ENST00000488279 TNS1Q9HBL0 1735 aaKnown RBP31.78■■■□□ 2.68
PTPN4-211ENST00000488279 PARP4Q9UKK3 1724 aaKnown RBP31.77■■■□□ 2.68
PTPN4-211ENST00000488279 NINLQ9Y2I6 1382 aa31.76■■■□□ 2.67
PTPN4-211ENST00000488279 R3HDM1Q15032 1099 aaKnown RBP31.75■■■□□ 2.67
PTPN4-211ENST00000488279 OVOS2A0A0G2JMS6 1433 aa31.74■■■□□ 2.67
PTPN4-211ENST00000488279 OVOS2A0A0J9YW53 1432 aa31.74■■■□□ 2.67
PTPN4-211ENST00000488279 OVOS2Q6IE36 1432 aa31.74■■■□□ 2.67
PTPN4-211ENST00000488279 TMF1P82094 1093 aa31.71■■■□□ 2.67
PTPN4-211ENST00000488279 ABCC6O95255 1503 aa31.7■■■□□ 2.67
PTPN4-211ENST00000488279 CCDC7Q96M83 1385 aa31.7■■■□□ 2.67
PTPN4-211ENST00000488279 EXOC5O00471 708 aa31.7■■■□□ 2.67
PTPN4-211ENST00000488279 USP47Q96K76 1375 aa31.69■■■□□ 2.66
PTPN4-211ENST00000488279 MARCH10Q8NA82 808 aaPredicted RBP31.69■■■□□ 2.66
PTPN4-211ENST00000488279 TIMELESSQ9UNS1 1208 aa31.69■■■□□ 2.66
PTPN4-211ENST00000488279 PCGF6Q9BYE7 350 aa31.68■■■□□ 2.66
PTPN4-211ENST00000488279 NLRP2Q9NX02 1062 aa31.68■■■□□ 2.66
PTPN4-211ENST00000488279 ERBB3P21860 1342 aa31.67■■■□□ 2.66
PTPN4-211ENST00000488279 RGPD5Q99666 1765 aa31.66■■■□□ 2.66
PTPN4-211ENST00000488279 NBPF14Q5TI25 921 aa31.66■■■□□ 2.66
PTPN4-211ENST00000488279 BCL11BQ9C0K0 894 aaPredicted RBP31.66■■■□□ 2.66
PTPN4-211ENST00000488279 USP54Q70EL1 1684 aa31.66■■■□□ 2.66
PTPN4-211ENST00000488279 LRRC37A3O60309 1634 aa31.65■■■□□ 2.66
PTPN4-211ENST00000488279 COG3Q96JB2 828 aa31.65■■■□□ 2.66
PTPN4-211ENST00000488279 ANKRD24Q8TF21 1146 aa31.64■■■□□ 2.66
PTPN4-211ENST00000488279 CLSPNQ9HAW4 1339 aa31.63■■■□□ 2.65
PTPN4-211ENST00000488279 PLSCR1O15162 318 aa31.62■■■□□ 2.65
PTPN4-211ENST00000488279 CDCA8Q53HL2 280 aa31.62■■■□□ 2.65
PTPN4-211ENST00000488279 PEAK1Q9H792 1746 aa31.61■■■□□ 2.65
PTPN4-211ENST00000488279 BCL9O00512 1426 aa31.61■■■□□ 2.65
PTPN4-211ENST00000488279 ANKRD36BQ8N2N9 1353 aa31.61■■■□□ 2.65
PTPN4-211ENST00000488279 IP6K1Q92551 441 aa31.61■■■□□ 2.65
PTPN4-211ENST00000488279 IL2RBP14784 551 aa31.59■■■□□ 2.65
PTPN4-211ENST00000488279 LRP5O75197 1615 aa31.58■■■□□ 2.65
PTPN4-211ENST00000488279 PTF1AQ7RTS3 328 aa31.58■■■□□ 2.65
PTPN4-211ENST00000488279 WNK3Q9BYP7 1800 aa31.55■■■□□ 2.64
PTPN4-211ENST00000488279 LTN1O94822 1766 aa31.55■■■□□ 2.64
PTPN4-211ENST00000488279 LTV1Q96GA3 475 aaPredicted RBP31.54■■■□□ 2.64
PTPN4-211ENST00000488279 TNS2Q63HR2 1409 aa31.53■■■□□ 2.64
PTPN4-211ENST00000488279 AMPHP49418 695 aa31.53■■■□□ 2.64
PTPN4-211ENST00000488279 RREB1Q92766 1687 aa31.53■■■□□ 2.64
PTPN4-211ENST00000488279 MAP3K19Q56UN5 1328 aa31.52■■■□□ 2.64
PTPN4-211ENST00000488279 FYB1O15117 783 aa31.52■■■□□ 2.64
PTPN4-211ENST00000488279 FBLN1P23142 703 aa31.52■■■□□ 2.64
PTPN4-211ENST00000488279 SBF2Q86WG5 1849 aa31.5■■■□□ 2.63
PTPN4-211ENST00000488279 HOXC9P31274 260 aa31.5■■■□□ 2.63
PTPN4-211ENST00000488279 GGNBP2Q9H3C7 697 aa31.49■■■□□ 2.63
PTPN4-211ENST00000488279 PROM2Q8N271 834 aa31.48■■■□□ 2.63
PTPN4-211ENST00000488279 NUP188Q5SRE5 1749 aa31.48■■■□□ 2.63
PTPN4-211ENST00000488279 KCNQ2O43526 872 aa31.47■■■□□ 2.63
PTPN4-211ENST00000488279 ACSBG1Q96GR2 724 aa31.45■■■□□ 2.63
PTPN4-211ENST00000488279 RRS1Q15050 365 aaKnown RBP31.43■■■□□ 2.62
PTPN4-211ENST00000488279 TXNRD1Q16881 649 aa31.42■■■□□ 2.62
PTPN4-211ENST00000488279 RGPD3A6NKT7 1758 aaPredicted RBP31.42■■■□□ 2.62
PTPN4-211ENST00000488279 RGPD4Q7Z3J3 1758 aa31.42■■■□□ 2.62
PTPN4-211ENST00000488279 DDX54Q8TDD1 881 aaKnown RBP31.4■■■□□ 2.62
PTPN4-211ENST00000488279 CARD14Q9BXL6 1004 aa31.4■■■□□ 2.62
PTPN4-211ENST00000488279 CCER1Q8TC90 406 aaPredicted RBP31.39■■■□□ 2.62
PTPN4-211ENST00000488279 ANO8Q9HCE9 1232 aaPredicted RBP31.39■■■□□ 2.62
PTPN4-211ENST00000488279 RTL1A6NKG5 1358 aa31.39■■■□□ 2.62
PTPN4-211ENST00000488279 SPON1Q9HCB6 807 aa31.38■■■□□ 2.61
PTPN4-211ENST00000488279 NBPF6Q5VWK0 638 aa31.34■■■□□ 2.61
PTPN4-211ENST00000488279 NBPF4Q96M43 638 aa31.34■■■□□ 2.61
PTPN4-211ENST00000488279 STK32BQ9NY57 414 aa31.34■■■□□ 2.61
PTPN4-211ENST00000488279 FAM208AQ9UK61 1670 aaKnown RBP31.33■■■□□ 2.61
PTPN4-211ENST00000488279 ZCRB1Q8TBF4 217 aaKnown RBP31.33■■■□□ 2.61
PTPN4-211ENST00000488279 NSD3Q9BZ95 1437 aa31.32■■■□□ 2.6
PTPN4-211ENST00000488279 HSP90AB2PQ58FF8 381 aa31.31■■■□□ 2.6
PTPN4-211ENST00000488279 POLR3GLQ9BT43 218 aa31.31■■■□□ 2.6
PTPN4-211ENST00000488279 PPP1R1BQ9UD71 204 aaPredicted RBP31.31■■■□□ 2.6
PTPN4-211ENST00000488279 SMG6Q86US8 1419 aaKnown RBP31.31■■■□□ 2.6
PTPN4-211ENST00000488279 NHSQ6T4R5 1651 aa31.3■■■□□ 2.6
PTPN4-211ENST00000488279 EIF4G2P78344 907 aaKnown RBP eCLIP31.3■■■□□ 2.61e-7■■■■■ 57.2
PTPN4-211ENST00000488279 SLC15A2Q16348 729 aa31.3■■■□□ 2.6
PTPN4-211ENST00000488279 INSRP06213 1382 aa31.29■■■□□ 2.6
PTPN4-211ENST00000488279 KIF24Q5T7B8 1368 aa31.29■■■□□ 2.6
PTPN4-211ENST00000488279 FLT4P35916 1363 aa31.28■■■□□ 2.6
PTPN4-211ENST00000488279 CGNL1Q0VF96 1302 aa31.27■■■□□ 2.6
PTPN4-211ENST00000488279 USHBP1Q8N6Y0 703 aa31.27■■■□□ 2.6
PTPN4-211ENST00000488279 RAPGEF4Q8WZA2 1011 aa31.27■■■□□ 2.6
PTPN4-211ENST00000488279 PDGFDQ9GZP0 370 aaPredicted RBP31.26■■■□□ 2.59
PTPN4-211ENST00000488279 SYTL4Q96C24 671 aaPredicted RBP31.25■■■□□ 2.59
PTPN4-211ENST00000488279 PRIM1P49642 420 aaKnown RBP31.24■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms