RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 PRR20DP86480 221 aa10.59□□□□□ -0.71
USP48-209ENST00000487880 PRR20BP86481 221 aa10.59□□□□□ -0.71
USP48-209ENST00000487880 PRR20AP86496 221 aa10.59□□□□□ -0.71
USP48-209ENST00000487880 FOXC1Q12948 553 aa10.59□□□□□ -0.71
USP48-209ENST00000487880 NFATC2IPQ8NCF5 419 aa10.59□□□□□ -0.71
USP48-209ENST00000487880 SERPINA10Q9UK55 444 aa10.59□□□□□ -0.71
USP48-209ENST00000487880 GRM5P41594 1212 aa10.58□□□□□ -0.72
USP48-209ENST00000487880 KCTD15Q96SI1 283 aaPredicted RBP10.58□□□□□ -0.72
USP48-209ENST00000487880 PIK3CDO00329 1044 aa10.57□□□□□ -0.72
USP48-209ENST00000487880 GIGYF1O75420 1035 aaPredicted RBP10.57□□□□□ -0.72
USP48-209ENST00000487880 ADH1CP00326 375 aa10.57□□□□□ -0.72
USP48-209ENST00000487880 VASH1Q7L8A9 365 aaPredicted RBP10.57□□□□□ -0.72
USP48-209ENST00000487880 SEPT12Q8IYM1 358 aa10.57□□□□□ -0.72
USP48-209ENST00000487880 CCDC97Q96F63 343 aaPredicted RBP10.57□□□□□ -0.72
USP48-209ENST00000487880 SNIP1Q8TAD8 396 aaKnown RBP10.56□□□□□ -0.72
USP48-209ENST00000487880 PPP1R12CQ9BZL4 782 aa10.56□□□□□ -0.72
USP48-209ENST00000487880 TOR4AQ9NXH8 423 aa10.56□□□□□ -0.72
USP48-209ENST00000487880 TNFRSF10AO00220 468 aa10.55□□□□□ -0.72
USP48-209ENST00000487880 ARID5BQ14865 1188 aa10.55□□□□□ -0.72
USP48-209ENST00000487880 SLFNL1Q499Z3 407 aa10.55□□□□□ -0.72
USP48-209ENST00000487880 INTS6LQ5JSJ4 861 aaKnown RBP10.55□□□□□ -0.72
USP48-209ENST00000487880 TBC1D9Q6ZT07 1266 aa10.55□□□□□ -0.72
USP48-209ENST00000487880 PALM3A6NDB9 673 aaPredicted RBP10.54□□□□□ -0.72
USP48-209ENST00000487880 FSHRP23945 695 aa10.54□□□□□ -0.72
USP48-209ENST00000487880 CFAP70Q5T0N1 1121 aa10.54□□□□□ -0.72
USP48-209ENST00000487880 CCDC125Q86Z20 511 aa10.54□□□□□ -0.72
USP48-209ENST00000487880 RNF135Q8IUD6 432 aa10.54□□□□□ -0.72
USP48-209ENST00000487880 ATP9BO43861 1147 aa10.53□□□□□ -0.72
USP48-209ENST00000487880 NR5A1Q13285 461 aa10.53□□□□□ -0.72
USP48-209ENST00000487880 RNF20Q5VTR2 975 aa10.53□□□□□ -0.72
USP48-209ENST00000487880 CCDC85AQ96PX6 553 aaPredicted RBP10.53□□□□□ -0.72
USP48-209ENST00000487880 MAFBQ9Y5Q3 323 aaPredicted RBP10.53□□□□□ -0.72
USP48-209ENST00000487880 ALDH1A1P00352 501 aa10.52□□□□□ -0.73
USP48-209ENST00000487880 TFIP11Q9UBB9 837 aaKnown RBP10.52□□□□□ -0.73
USP48-209ENST00000487880 NR3C2P08235 984 aa10.51□□□□□ -0.73
USP48-209ENST00000487880 TRAF7Q6Q0C0 670 aa10.51□□□□□ -0.73
USP48-209ENST00000487880 CYP4X1Q8N118 509 aa10.51□□□□□ -0.73
USP48-209ENST00000487880 PLPP7Q8NBV4 271 aa10.51□□□□□ -0.73
USP48-209ENST00000487880 USP17L5A8MUK1 530 aa10.5□□□□□ -0.73
USP48-209ENST00000487880 J3QL48 77 aa10.5□□□□□ -0.73
USP48-209ENST00000487880 SKIP12755 728 aa10.5□□□□□ -0.73
USP48-209ENST00000487880 MAP7D1Q3KQU3 841 aa10.5□□□□□ -0.73
USP48-209ENST00000487880 TSGA10IPQ3SY00 556 aa10.5□□□□□ -0.73
USP48-209ENST00000487880 PLEKHM2Q8IWE5 1019 aa10.5□□□□□ -0.73
USP48-209ENST00000487880 TTC24A2A3L6 582 aaPredicted RBP10.49□□□□□ -0.73
USP48-209ENST00000487880 ERVH48-1M5A8F1 160 aa10.49□□□□□ -0.73
USP48-209ENST00000487880 SMPD1P17405 629 aa10.49□□□□□ -0.73
USP48-209ENST00000487880 Q6ZNB5 142 aa10.49□□□□□ -0.73
USP48-209ENST00000487880 PDZRN3Q9UPQ7 1066 aa10.49□□□□□ -0.73
USP48-209ENST00000487880 NNTQ13423 1086 aa10.48□□□□□ -0.73
USP48-209ENST00000487880 CCDC116Q8IYX3 515 aa10.48□□□□□ -0.73
USP48-209ENST00000487880 ARID3AQ99856 593 aa10.48□□□□□ -0.73
USP48-209ENST00000487880 DOLKQ9UPQ8 538 aa10.48□□□□□ -0.73
USP48-209ENST00000487880 USP17L3A6NCW0 530 aa10.47□□□□□ -0.73
USP48-209ENST00000487880 USP17L4A6NCW7 530 aa10.47□□□□□ -0.73
USP48-209ENST00000487880 LZTS3O60299 673 aaPredicted RBP10.47□□□□□ -0.73
USP48-209ENST00000487880 RAB15P59190 212 aa10.47□□□□□ -0.73
USP48-209ENST00000487880 DHX9Q08211 1270 aaKnown RBP10.47□□□□□ -0.73
USP48-209ENST00000487880 USP17L2Q6R6M4 530 aa10.47□□□□□ -0.73
USP48-209ENST00000487880 USP17L1Q7RTZ2 530 aa10.47□□□□□ -0.73
USP48-209ENST00000487880 WASF2Q9Y6W5 498 aa10.47□□□□□ -0.73
USP48-209ENST00000487880 SRPK2P78362 688 aaKnown RBP10.46□□□□□ -0.73
USP48-209ENST00000487880 CDCA7Q9BWT1 371 aaPredicted RBP10.46□□□□□ -0.73
USP48-209ENST00000487880 KLF16Q9BXK1 252 aaPredicted RBP10.46□□□□□ -0.73
USP48-209ENST00000487880 PCDHB11Q9Y5F2 797 aa10.46□□□□□ -0.73
USP48-209ENST00000487880 LMOD1P29536 600 aaPredicted RBP10.45□□□□□ -0.74
USP48-209ENST00000487880 NCOA4Q13772 614 aa10.45□□□□□ -0.74
USP48-209ENST00000487880 LAPTM4AQ15012 233 aa10.45□□□□□ -0.74
USP48-209ENST00000487880 PPP1R26Q5T8A7 1209 aaPredicted RBP10.45□□□□□ -0.74
USP48-209ENST00000487880 ERVK-9P63128 1117 aa10.44□□□□□ -0.74
USP48-209ENST00000487880 DEPDC4Q8N2C3 294 aa10.44□□□□□ -0.74
USP48-209ENST00000487880 TMPRSS4Q9NRS4 437 aa10.44□□□□□ -0.74
USP48-209ENST00000487880 KANK4Q5T7N3 995 aaPredicted RBP10.43□□□□□ -0.74
USP48-209ENST00000487880 ZNF784Q8NCA9 323 aaPredicted RBP10.43□□□□□ -0.74
USP48-209ENST00000487880 EMILIN1Q9Y6C2 1016 aa10.43□□□□□ -0.74
USP48-209ENST00000487880 LILRA1O75019 489 aa10.42□□□□□ -0.74
USP48-209ENST00000487880 SCTRP47872 440 aa10.42□□□□□ -0.74
USP48-209ENST00000487880 EML3Q32P44 896 aa10.42□□□□□ -0.74
USP48-209ENST00000487880 RFX1P22670 979 aa10.41□□□□□ -0.74
USP48-209ENST00000487880 OXLD1Q5BKU9 147 aa10.41□□□□□ -0.74
USP48-209ENST00000487880 HPS1Q92902 700 aa10.41□□□□□ -0.74
USP48-209ENST00000487880 PBXIP1Q96AQ6 731 aa10.41□□□□□ -0.74
USP48-209ENST00000487880 PGPEP1Q9NXJ5 209 aa10.41□□□□□ -0.74
USP48-209ENST00000487880 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.4□□□□□ -0.74
USP48-209ENST00000487880 NRG2O14511 850 aaPredicted RBP10.4□□□□□ -0.74
USP48-209ENST00000487880 TIMP2P16035 220 aa10.4□□□□□ -0.74
USP48-209ENST00000487880 USP4Q13107 963 aa10.4□□□□□ -0.74
USP48-209ENST00000487880 ITPKCQ96DU7 683 aa10.4□□□□□ -0.74
USP48-209ENST00000487880 PPP1R15AO75807 674 aaPredicted RBP10.39□□□□□ -0.75
USP48-209ENST00000487880 MYT1Q01538 1121 aa10.39□□□□□ -0.75
USP48-209ENST00000487880 CC2D2BQ6DHV5 1058 aa10.39□□□□□ -0.75
USP48-209ENST00000487880 TRIM52Q96A61 297 aa10.39□□□□□ -0.75
USP48-209ENST00000487880 CYLDQ9NQC7 956 aa10.39□□□□□ -0.75
USP48-209ENST00000487880 ATP5J2-PTCD1G3V325 749 aa10.38□□□□□ -0.75
USP48-209ENST00000487880 AVPP01185 164 aa10.38□□□□□ -0.75
USP48-209ENST00000487880 WDR4P57081 412 aaKnown RBP10.38□□□□□ -0.75
USP48-209ENST00000487880 SIRT1Q96EB6 747 aa10.38□□□□□ -0.75
USP48-209ENST00000487880 MKRN1Q9UHC7 482 aaKnown RBP10.38□□□□□ -0.75
USP48-209ENST00000487880 NOD1Q9Y239 953 aa10.38□□□□□ -0.75
USP48-209ENST00000487880 GFRA3O60609 400 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms