RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 DDB1Q16531 1140 aa17.3■□□□□ 0.36
VPS16-208ENST00000487461 NME9Q86XW9 330 aa17.3■□□□□ 0.36
VPS16-208ENST00000487461 CARD10Q9BWT7 1032 aa17.3■□□□□ 0.36
VPS16-208ENST00000487461 PARD3Q8TEW0 1356 aa17.29■□□□□ 0.36
VPS16-208ENST00000487461 C11orf95C9JLR9 678 aaPredicted RBP17.29■□□□□ 0.36
VPS16-208ENST00000487461 CSB-PGBD3P0DP91 1061 aa17.29■□□□□ 0.36
VPS16-208ENST00000487461 PARP4Q9UKK3 1724 aaKnown RBP17.28■□□□□ 0.36
VPS16-208ENST00000487461 HDGFL2Q7Z4V5 671 aaPredicted RBP17.28■□□□□ 0.36
VPS16-208ENST00000487461 MARCH10Q8NA82 808 aaPredicted RBP17.28■□□□□ 0.36
VPS16-208ENST00000487461 CD163L1Q9NR16 1453 aa17.28■□□□□ 0.36
VPS16-208ENST00000487461 USP31Q70CQ4 1352 aa17.28■□□□□ 0.36
VPS16-208ENST00000487461 PTF1AQ7RTS3 328 aa17.27■□□□□ 0.36
VPS16-208ENST00000487461 PUS7Q96PZ0 661 aaKnown RBP17.27■□□□□ 0.36
VPS16-208ENST00000487461 CDCA7Q9BWT1 371 aaPredicted RBP17.27■□□□□ 0.36
VPS16-208ENST00000487461 NFAT5O94916 1531 aa17.26■□□□□ 0.35
VPS16-208ENST00000487461 LRP5O75197 1615 aa17.26■□□□□ 0.35
VPS16-208ENST00000487461 TRIM26Q12899 539 aaPredicted RBP17.26■□□□□ 0.35
VPS16-208ENST00000487461 TESK2Q96S53 571 aa17.26■□□□□ 0.35
VPS16-208ENST00000487461 OVOS2A0A0G2JMS6 1433 aa17.25■□□□□ 0.35
VPS16-208ENST00000487461 OVOS2A0A0J9YW53 1432 aa17.25■□□□□ 0.35
VPS16-208ENST00000487461 OVOS2Q6IE36 1432 aa17.25■□□□□ 0.35
VPS16-208ENST00000487461 ST20-MTHFSA0A0A6YYL1 179 aa17.25■□□□□ 0.35
VPS16-208ENST00000487461 NBPF14Q5TI25 921 aa17.25■□□□□ 0.35
VPS16-208ENST00000487461 TERF2IPQ9NYB0 399 aa17.25■□□□□ 0.35
VPS16-208ENST00000487461 EXOC5O00471 708 aa17.24■□□□□ 0.35
VPS16-208ENST00000487461 BCL11BQ9C0K0 894 aaPredicted RBP17.24■□□□□ 0.35
VPS16-208ENST00000487461 RGPD5Q99666 1765 aa17.23■□□□□ 0.35
VPS16-208ENST00000487461 PLSCR1O15162 318 aa17.23■□□□□ 0.35
VPS16-208ENST00000487461 MON2Q7Z3U7 1717 aa17.23■□□□□ 0.35
VPS16-208ENST00000487461 PEAK1Q9H792 1746 aa17.23■□□□□ 0.35
VPS16-208ENST00000487461 LRRC37A3O60309 1634 aa17.22■□□□□ 0.35
VPS16-208ENST00000487461 A0A1W2PP64 1363 aa17.22■□□□□ 0.35
VPS16-208ENST00000487461 EDC4Q6P2E9 1401 aaKnown RBP17.21■□□□□ 0.35
VPS16-208ENST00000487461 CCDC7Q96M83 1385 aa17.21■□□□□ 0.35
VPS16-208ENST00000487461 NLRP2Q9NX02 1062 aa17.21■□□□□ 0.35
VPS16-208ENST00000487461 PROM2Q8N271 834 aa17.2■□□□□ 0.34
VPS16-208ENST00000487461 BCL9O00512 1426 aa17.2■□□□□ 0.34
VPS16-208ENST00000487461 ERBB3P21860 1342 aa17.2■□□□□ 0.34
VPS16-208ENST00000487461 RREB1Q92766 1687 aa17.2■□□□□ 0.34
VPS16-208ENST00000487461 ANKRD24Q8TF21 1146 aa17.19■□□□□ 0.34
VPS16-208ENST00000487461 SLC24A1O60721 1099 aa17.18■□□□□ 0.34
VPS16-208ENST00000487461 NUP188Q5SRE5 1749 aa17.18■□□□□ 0.34
VPS16-208ENST00000487461 ABCC6O95255 1503 aa17.17■□□□□ 0.34
VPS16-208ENST00000487461 SBF2Q86WG5 1849 aa17.17■□□□□ 0.34
VPS16-208ENST00000487461 KCNQ2O43526 872 aa17.17■□□□□ 0.34
VPS16-208ENST00000487461 USP54Q70EL1 1684 aa17.16■□□□□ 0.34
VPS16-208ENST00000487461 FBLN1P23142 703 aa17.16■□□□□ 0.34
VPS16-208ENST00000487461 IP6K1Q92551 441 aa17.16■□□□□ 0.34
VPS16-208ENST00000487461 NINLQ9Y2I6 1382 aa17.15■□□□□ 0.34
VPS16-208ENST00000487461 WNK3Q9BYP7 1800 aa17.15■□□□□ 0.34
VPS16-208ENST00000487461 IL2RBP14784 551 aa17.15■□□□□ 0.34
VPS16-208ENST00000487461 ANO8Q9HCE9 1232 aaPredicted RBP17.15■□□□□ 0.34
VPS16-208ENST00000487461 COG3Q96JB2 828 aa17.14■□□□□ 0.33
VPS16-208ENST00000487461 TXNRD1Q16881 649 aa17.13■□□□□ 0.33
VPS16-208ENST00000487461 LTV1Q96GA3 475 aaPredicted RBP17.13■□□□□ 0.33
VPS16-208ENST00000487461 ACSBG1Q96GR2 724 aa17.13■□□□□ 0.33
VPS16-208ENST00000487461 SPON1Q9HCB6 807 aa17.13■□□□□ 0.33
VPS16-208ENST00000487461 TNS2Q63HR2 1409 aa17.13■□□□□ 0.33
VPS16-208ENST00000487461 TMF1P82094 1093 aa17.12■□□□□ 0.33
VPS16-208ENST00000487461 LTN1O94822 1766 aa17.11■□□□□ 0.33
VPS16-208ENST00000487461 PDGFDQ9GZP0 370 aaPredicted RBP17.11■□□□□ 0.33
VPS16-208ENST00000487461 MAP3K19Q56UN5 1328 aa17.11■□□□□ 0.33
VPS16-208ENST00000487461 USP47Q96K76 1375 aa17.11■□□□□ 0.33
VPS16-208ENST00000487461 FYB1O15117 783 aa17.1■□□□□ 0.33
VPS16-208ENST00000487461 HOXC9P31274 260 aa17.1■□□□□ 0.33
VPS16-208ENST00000487461 ANKRD36BQ8N2N9 1353 aa17.1■□□□□ 0.33
VPS16-208ENST00000487461 AMPHP49418 695 aa17.09■□□□□ 0.33
VPS16-208ENST00000487461 RGPD3A6NKT7 1758 aaPredicted RBP17.09■□□□□ 0.33
VPS16-208ENST00000487461 RGPD4Q7Z3J3 1758 aa17.09■□□□□ 0.33
VPS16-208ENST00000487461 GGNBP2Q9H3C7 697 aa17.08■□□□□ 0.32
VPS16-208ENST00000487461 SLC15A2Q16348 729 aa17.07■□□□□ 0.32
VPS16-208ENST00000487461 DDX54Q8TDD1 881 aaKnown RBP17.07■□□□□ 0.32
VPS16-208ENST00000487461 STK32BQ9NY57 414 aa17.07■□□□□ 0.32
VPS16-208ENST00000487461 PPP1R1BQ9UD71 204 aaPredicted RBP17.07■□□□□ 0.32
VPS16-208ENST00000487461 RRS1Q15050 365 aaKnown RBP17.06■□□□□ 0.32
VPS16-208ENST00000487461 ZBTB7AO95365 584 aa17.05■□□□□ 0.32
VPS16-208ENST00000487461 CDCA8Q53HL2 280 aa17.04■□□□□ 0.32
VPS16-208ENST00000487461 TIMELESSQ9UNS1 1208 aa17.04■□□□□ 0.32
VPS16-208ENST00000487461 NBPF6Q5VWK0 638 aa17.03■□□□□ 0.32
VPS16-208ENST00000487461 NBPF4Q96M43 638 aa17.03■□□□□ 0.32
VPS16-208ENST00000487461 CARD14Q9BXL6 1004 aa17.03■□□□□ 0.32
VPS16-208ENST00000487461 PCGF6Q9BYE7 350 aa17.03■□□□□ 0.32
VPS16-208ENST00000487461 ATF5Q9Y2D1 282 aaPredicted RBP17.03■□□□□ 0.32
VPS16-208ENST00000487461 KAT6BQ8WYB5 2073 aa17.02■□□□□ 0.32
VPS16-208ENST00000487461 NHSQ6T4R5 1651 aa17.02■□□□□ 0.32
VPS16-208ENST00000487461 PTGER2P43116 358 aa17.02■□□□□ 0.32
VPS16-208ENST00000487461 ZCRB1Q8TBF4 217 aaKnown RBP17.02■□□□□ 0.32
VPS16-208ENST00000487461 LRRC4BQ9NT99 713 aa17.02■□□□□ 0.32
VPS16-208ENST00000487461 PRIM1P49642 420 aaKnown RBP17.01■□□□□ 0.31
VPS16-208ENST00000487461 CASZ1Q86V15 1759 aa17.01■□□□□ 0.31
VPS16-208ENST00000487461 USHBP1Q8N6Y0 703 aa17■□□□□ 0.31
VPS16-208ENST00000487461 RTL1A6NKG5 1358 aa17■□□□□ 0.31
VPS16-208ENST00000487461 HSP90AB2PQ58FF8 381 aa16.99■□□□□ 0.31
VPS16-208ENST00000487461 ZNF827Q17R98 1081 aa16.98■□□□□ 0.31
VPS16-208ENST00000487461 SYTL4Q96C24 671 aaPredicted RBP16.98■□□□□ 0.31
VPS16-208ENST00000487461 CLSPNQ9HAW4 1339 aa16.97■□□□□ 0.31
VPS16-208ENST00000487461 MEGF6O75095 1541 aa16.97■□□□□ 0.31
VPS16-208ENST00000487461 MTFR1LQ9H019 292 aa16.97■□□□□ 0.31
VPS16-208ENST00000487461 BTAF1O14981 1849 aa16.97■□□□□ 0.31
VPS16-208ENST00000487461 FAM208AQ9UK61 1670 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms