RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 WNK3Q9BYP7 1800 aa28■■■□□ 2.07
SMPDL3A-202ENST00000487215 PLSCR1O15162 318 aa28■■■□□ 2.07
SMPDL3A-202ENST00000487215 KCNQ2O43526 872 aa28■■■□□ 2.07
SMPDL3A-202ENST00000487215 PTF1AQ7RTS3 328 aa27.99■■■□□ 2.07
SMPDL3A-202ENST00000487215 TTC21BQ7Z4L5 1316 aa27.98■■■□□ 2.07
SMPDL3A-202ENST00000487215 ARHGEF25Q86VW2 580 aa27.98■■■□□ 2.07
SMPDL3A-202ENST00000487215 PPP1R1BQ9UD71 204 aaPredicted RBP27.98■■■□□ 2.07
SMPDL3A-202ENST00000487215 BCL11BQ9C0K0 894 aaPredicted RBP27.97■■■□□ 2.07
SMPDL3A-202ENST00000487215 ANO8Q9HCE9 1232 aaPredicted RBP27.97■■■□□ 2.07
SMPDL3A-202ENST00000487215 MARCH10Q8NA82 808 aaPredicted RBP27.96■■■□□ 2.07
SMPDL3A-202ENST00000487215 KCNH5Q8NCM2 988 aa27.95■■■□□ 2.06
SMPDL3A-202ENST00000487215 ZNF692Q9BU19 519 aaPredicted RBP27.95■■■□□ 2.06
SMPDL3A-202ENST00000487215 CDCA7Q9BWT1 371 aaPredicted RBP27.95■■■□□ 2.06
SMPDL3A-202ENST00000487215 BCL9O00512 1426 aa27.94■■■□□ 2.06
SMPDL3A-202ENST00000487215 AKAP12Q02952 1782 aa27.94■■■□□ 2.06
SMPDL3A-202ENST00000487215 SOX12O15370 315 aa27.94■■■□□ 2.06
SMPDL3A-202ENST00000487215 NINLQ9Y2I6 1382 aa27.94■■■□□ 2.06
SMPDL3A-202ENST00000487215 TTC21AQ8NDW8 1320 aa27.92■■■□□ 2.06
SMPDL3A-202ENST00000487215 ROCK2O75116 1388 aaKnown RBP27.92■■■□□ 2.06
SMPDL3A-202ENST00000487215 YY1P25490 414 aa27.92■■■□□ 2.06
SMPDL3A-202ENST00000487215 CARD10Q9BWT7 1032 aa27.92■■■□□ 2.06
SMPDL3A-202ENST00000487215 NFAT5O94916 1531 aa27.92■■■□□ 2.06
SMPDL3A-202ENST00000487215 CASZ1Q86V15 1759 aa27.91■■■□□ 2.06
SMPDL3A-202ENST00000487215 CSB-PGBD3P0DP91 1061 aa27.91■■■□□ 2.06
SMPDL3A-202ENST00000487215 RGPD5Q99666 1765 aa27.91■■■□□ 2.06
SMPDL3A-202ENST00000487215 PROM2Q8N271 834 aa27.9■■■□□ 2.06
SMPDL3A-202ENST00000487215 SIN3AQ96ST3 1273 aa27.9■■■□□ 2.06
SMPDL3A-202ENST00000487215 KTN1Q86UP2 1357 aaKnown RBP27.87■■■□□ 2.05
SMPDL3A-202ENST00000487215 PDGFDQ9GZP0 370 aaPredicted RBP27.87■■■□□ 2.05
SMPDL3A-202ENST00000487215 ABCC6O95255 1503 aa27.86■■■□□ 2.05
SMPDL3A-202ENST00000487215 CCDC7Q96M83 1385 aa27.86■■■□□ 2.05
SMPDL3A-202ENST00000487215 EXOC5O00471 708 aa27.84■■■□□ 2.05
SMPDL3A-202ENST00000487215 TNS2Q63HR2 1409 aa27.84■■■□□ 2.05
SMPDL3A-202ENST00000487215 DCAF8L1A6NGE4 600 aa27.83■■■□□ 2.05
SMPDL3A-202ENST00000487215 TXNRD1Q16881 649 aa27.83■■■□□ 2.05
SMPDL3A-202ENST00000487215 MON2Q7Z3U7 1717 aa27.83■■■□□ 2.05
SMPDL3A-202ENST00000487215 ZBTB7AO95365 584 aa27.82■■■□□ 2.04
SMPDL3A-202ENST00000487215 NEUROD1Q13562 356 aa27.82■■■□□ 2.04
SMPDL3A-202ENST00000487215 USP31Q70CQ4 1352 aa27.8■■■□□ 2.04
SMPDL3A-202ENST00000487215 STK32BQ9NY57 414 aa27.79■■■□□ 2.04
SMPDL3A-202ENST00000487215 MYOM1P52179 1685 aa27.78■■■□□ 2.04
SMPDL3A-202ENST00000487215 SBNO2Q9Y2G9 1366 aa27.78■■■□□ 2.04
SMPDL3A-202ENST00000487215 PTGER2P43116 358 aa27.78■■■□□ 2.04
SMPDL3A-202ENST00000487215 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.78■■■□□ 2.04
SMPDL3A-202ENST00000487215 USP54Q70EL1 1684 aa27.78■■■□□ 2.04
SMPDL3A-202ENST00000487215 ERBB3P21860 1342 aa27.77■■■□□ 2.04
SMPDL3A-202ENST00000487215 SLC15A2Q16348 729 aa27.77■■■□□ 2.04
SMPDL3A-202ENST00000487215 NHSQ6T4R5 1651 aa27.77■■■□□ 2.04
SMPDL3A-202ENST00000487215 CD163L1Q9NR16 1453 aa27.76■■■□□ 2.04
SMPDL3A-202ENST00000487215 NME9Q86XW9 330 aa27.75■■■□□ 2.03
SMPDL3A-202ENST00000487215 ATF5Q9Y2D1 282 aaPredicted RBP27.75■■■□□ 2.03
SMPDL3A-202ENST00000487215 NLRP2Q9NX02 1062 aa27.73■■■□□ 2.03
SMPDL3A-202ENST00000487215 ACSBG1Q96GR2 724 aa27.72■■■□□ 2.03
SMPDL3A-202ENST00000487215 LTN1O94822 1766 aa27.71■■■□□ 2.03
SMPDL3A-202ENST00000487215 IL2RBP14784 551 aa27.7■■■□□ 2.02
SMPDL3A-202ENST00000487215 TMC1Q8TDI8 760 aa27.69■■■□□ 2.02
SMPDL3A-202ENST00000487215 MTFR1LQ9H019 292 aa27.69■■■□□ 2.02
SMPDL3A-202ENST00000487215 PAPPAQ13219 1627 aa27.68■■■□□ 2.02
SMPDL3A-202ENST00000487215 ANKRD24Q8TF21 1146 aa27.68■■■□□ 2.02
SMPDL3A-202ENST00000487215 CARD11Q9BXL7 1154 aa27.68■■■□□ 2.02
SMPDL3A-202ENST00000487215 HDGFL2Q7Z4V5 671 aaPredicted RBP27.67■■■□□ 2.02
SMPDL3A-202ENST00000487215 FHDC1Q9C0D6 1143 aaPredicted RBP27.67■■■□□ 2.02
SMPDL3A-202ENST00000487215 EDC4Q6P2E9 1401 aaKnown RBP27.67■■■□□ 2.02
SMPDL3A-202ENST00000487215 SGIP1Q9BQI5 828 aa27.66■■■□□ 2.02
SMPDL3A-202ENST00000487215 SLC12A5Q9H2X9 1139 aa27.66■■■□□ 2.02
SMPDL3A-202ENST00000487215 SYT17Q9BSW7 474 aa27.65■■■□□ 2.02
SMPDL3A-202ENST00000487215 BTAF1O14981 1849 aa27.64■■■□□ 2.01
SMPDL3A-202ENST00000487215 A0A1W2PP64 1363 aa27.63■■■□□ 2.01
SMPDL3A-202ENST00000487215 ZNF827Q17R98 1081 aa27.6■■■□□ 2.01
SMPDL3A-202ENST00000487215 TERF2IPQ9NYB0 399 aa27.6■■■□□ 2.01
SMPDL3A-202ENST00000487215 LRRC4BQ9NT99 713 aa27.58■■■□□ 2.01
SMPDL3A-202ENST00000487215 ARXQ96QS3 562 aa27.57■■■□□ 2
SMPDL3A-202ENST00000487215 IP6K1Q92551 441 aa27.56■■■□□ 2
SMPDL3A-202ENST00000487215 ZNF784Q8NCA9 323 aaPredicted RBP27.55■■■□□ 2
SMPDL3A-202ENST00000487215 PUS7Q96PZ0 661 aaKnown RBP27.55■■■□□ 2
SMPDL3A-202ENST00000487215 DDX54Q8TDD1 881 aaKnown RBP27.54■■■□□ 2
SMPDL3A-202ENST00000487215 LTV1Q96GA3 475 aaPredicted RBP27.54■■■□□ 2
SMPDL3A-202ENST00000487215 MAP3K5Q99683 1374 aa27.54■■■□□ 2
SMPDL3A-202ENST00000487215 FAM208AQ9UK61 1670 aaKnown RBP27.54■■■□□ 2
SMPDL3A-202ENST00000487215 AKT1S1Q96B36 256 aa27.52■■■□□ 2
SMPDL3A-202ENST00000487215 UTRNP46939 3433 aa27.51■■□□□ 1.99
SMPDL3A-202ENST00000487215 TONSLQ96HA7 1378 aa27.5■■□□□ 1.99
SMPDL3A-202ENST00000487215 SLC27A3Q5K4L6 730 aa27.5■■□□□ 1.99
SMPDL3A-202ENST00000487215 MAP3K19Q56UN5 1328 aa27.48■■□□□ 1.99
SMPDL3A-202ENST00000487215 QSER1Q2KHR3 1735 aa27.47■■□□□ 1.99
SMPDL3A-202ENST00000487215 COG3Q96JB2 828 aa27.47■■□□□ 1.99
SMPDL3A-202ENST00000487215 TESK2Q96S53 571 aa27.47■■□□□ 1.99
SMPDL3A-202ENST00000487215 ANKRD36BQ8N2N9 1353 aa27.47■■□□□ 1.99
SMPDL3A-202ENST00000487215 HOXC9P31274 260 aa27.46■■□□□ 1.99
SMPDL3A-202ENST00000487215 SLC16A10Q8TF71 515 aa27.46■■□□□ 1.99
SMPDL3A-202ENST00000487215 KAT6BQ8WYB5 2073 aa27.45■■□□□ 1.99
SMPDL3A-202ENST00000487215 PNPLA7Q6ZV29 1317 aa27.45■■□□□ 1.99
SMPDL3A-202ENST00000487215 DOT1LQ8TEK3 1739 aa27.45■■□□□ 1.99
SMPDL3A-202ENST00000487215 FBLN1P23142 703 aa27.45■■□□□ 1.98
SMPDL3A-202ENST00000487215 SYTL4Q96C24 671 aaPredicted RBP27.45■■□□□ 1.98
SMPDL3A-202ENST00000487215 PRIM1P49642 420 aaKnown RBP27.44■■□□□ 1.98
SMPDL3A-202ENST00000487215 KCNQ4P56696 695 aa27.44■■□□□ 1.98
SMPDL3A-202ENST00000487215 NSD2O96028 1365 aa27.44■■□□□ 1.98
SMPDL3A-202ENST00000487215 MEGF6O75095 1541 aa27.43■■□□□ 1.98
SMPDL3A-202ENST00000487215 ST20-MTHFSA0A0A6YYL1 179 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms