RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 BTG4Q9NY30 223 aa9.91□□□□□ -0.82
VPS50-218ENST00000485994 COL14A1Q05707 1796 aaKnown RBP9.91□□□□□ -0.82
VPS50-218ENST00000485994 CPSF1Q10570 1443 aaKnown RBP9.9□□□□□ -0.82
VPS50-218ENST00000485994 TTC21AQ8NDW8 1320 aa9.9□□□□□ -0.82
VPS50-218ENST00000485994 TESK2Q96S53 571 aa9.9□□□□□ -0.82
VPS50-218ENST00000485994 ST20-MTHFSA0A0A6YYL1 179 aa9.89□□□□□ -0.83
VPS50-218ENST00000485994 NLRP6P59044 892 aa9.89□□□□□ -0.83
VPS50-218ENST00000485994 PCGF6Q9BYE7 350 aa9.89□□□□□ -0.83
VPS50-218ENST00000485994 PRDM11Q9NQV5 511 aa9.89□□□□□ -0.83
VPS50-218ENST00000485994 PLCH1Q4KWH8 1693 aa9.89□□□□□ -0.83
VPS50-218ENST00000485994 GLI3P10071 1580 aa9.88□□□□□ -0.83
VPS50-218ENST00000485994 SPATA31A5Q5VU36 1347 aa9.88□□□□□ -0.83
VPS50-218ENST00000485994 TTC21BQ7Z4L5 1316 aa9.88□□□□□ -0.83
VPS50-218ENST00000485994 SPATA31A7Q8IWB4 1347 aa9.88□□□□□ -0.83
VPS50-218ENST00000485994 POTEGQ6S5H5 508 aa9.88□□□□□ -0.83
VPS50-218ENST00000485994 KIAA0232Q92628 1395 aa9.88□□□□□ -0.83
VPS50-218ENST00000485994 POTEJP0CG39 1038 aa9.87□□□□□ -0.83
VPS50-218ENST00000485994 ZC3H6P61129 1189 aaKnown RBP9.87□□□□□ -0.83
VPS50-218ENST00000485994 NUTM2GQ5VZR2 741 aa9.87□□□□□ -0.83
VPS50-218ENST00000485994 SEPT12Q8IYM1 358 aa9.87□□□□□ -0.83
VPS50-218ENST00000485994 KCNH5Q8NCM2 988 aa9.87□□□□□ -0.83
VPS50-218ENST00000485994 USP31Q70CQ4 1352 aa9.87□□□□□ -0.83
VPS50-218ENST00000485994 NINLQ9Y2I6 1382 aa9.87□□□□□ -0.83
VPS50-218ENST00000485994 AKAP12Q02952 1782 aa9.86□□□□□ -0.83
VPS50-218ENST00000485994 SLC12A5Q9H2X9 1139 aa9.86□□□□□ -0.83
VPS50-218ENST00000485994 THRAP3Q9Y2W1 955 aaKnown RBP9.86□□□□□ -0.83
VPS50-218ENST00000485994 AATKQ6ZMQ8 1374 aa9.86□□□□□ -0.83
VPS50-218ENST00000485994 KTN1Q86UP2 1357 aaKnown RBP9.86□□□□□ -0.83
VPS50-218ENST00000485994 PHRF1Q9P1Y6 1649 aaKnown RBP9.85□□□□□ -0.83
VPS50-218ENST00000485994 SPATA31A1Q5TZJ5 1347 aa9.85□□□□□ -0.83
VPS50-218ENST00000485994 NRAPQ86VF7 1730 aa9.85□□□□□ -0.83
VPS50-218ENST00000485994 PLEKHG5O94827 1062 aa9.85□□□□□ -0.83
VPS50-218ENST00000485994 CHRNA2Q15822 529 aa9.85□□□□□ -0.83
VPS50-218ENST00000485994 BARGINQ6ZT62 677 aa9.85□□□□□ -0.83
VPS50-218ENST00000485994 HDGFL2Q7Z4V5 671 aaPredicted RBP9.85□□□□□ -0.83
VPS50-218ENST00000485994 ARHGEF25Q86VW2 580 aa9.85□□□□□ -0.83
VPS50-218ENST00000485994 TERF2IPQ9NYB0 399 aa9.85□□□□□ -0.83
VPS50-218ENST00000485994 SLIT3O75094 1523 aa9.85□□□□□ -0.83
VPS50-218ENST00000485994 CD163L1Q9NR16 1453 aa9.85□□□□□ -0.83
VPS50-218ENST00000485994 BRWD3Q6RI45 1802 aa9.84□□□□□ -0.83
VPS50-218ENST00000485994 EP400Q96L91 3159 aa9.84□□□□□ -0.83
VPS50-218ENST00000485994 EVA1CP58658 441 aa9.84□□□□□ -0.83
VPS50-218ENST00000485994 TMF1P82094 1093 aa9.84□□□□□ -0.83
VPS50-218ENST00000485994 CDCA8Q53HL2 280 aa9.84□□□□□ -0.83
VPS50-218ENST00000485994 KRT27Q7Z3Y8 459 aa9.84□□□□□ -0.83
VPS50-218ENST00000485994 CCDC9Q9Y3X0 531 aaKnown RBP9.84□□□□□ -0.83
VPS50-218ENST00000485994 CAMTA1Q9Y6Y1 1673 aa9.83□□□□□ -0.84
VPS50-218ENST00000485994 MNX1P50219 401 aaPredicted RBP9.83□□□□□ -0.84
VPS50-218ENST00000485994 TMC1Q8TDI8 760 aa9.83□□□□□ -0.84
VPS50-218ENST00000485994 NRKQ7Z2Y5 1582 aa9.83□□□□□ -0.84
VPS50-218ENST00000485994 FAM98CQ17RN3 349 aaKnown RBP9.82□□□□□ -0.84
VPS50-218ENST00000485994 MS4A3Q96HJ5 214 aa9.82□□□□□ -0.84
VPS50-218ENST00000485994 USP47Q96K76 1375 aa9.82□□□□□ -0.84
VPS50-218ENST00000485994 LMO7Q8WWI1 1683 aa9.82□□□□□ -0.84
VPS50-218ENST00000485994 COL18A1P39060 1754 aa9.82□□□□□ -0.84
VPS50-218ENST00000485994 MON2Q7Z3U7 1717 aa9.82□□□□□ -0.84
VPS50-218ENST00000485994 EDC4Q6P2E9 1401 aaKnown RBP9.82□□□□□ -0.84
VPS50-218ENST00000485994 PIK3C2AO00443 1686 aa9.81□□□□□ -0.84
VPS50-218ENST00000485994 C11orf95C9JLR9 678 aaPredicted RBP9.81□□□□□ -0.84
VPS50-218ENST00000485994 TCP11L2Q8N4U5 519 aa9.81□□□□□ -0.84
VPS50-218ENST00000485994 STRN4Q9NRL3 753 aa9.81□□□□□ -0.84
VPS50-218ENST00000485994 AXIN2Q9Y2T1 843 aa9.81□□□□□ -0.84
VPS50-218ENST00000485994 BLMP54132 1417 aaPredicted RBP9.81□□□□□ -0.84
VPS50-218ENST00000485994 USP54Q70EL1 1684 aa9.8□□□□□ -0.84
VPS50-218ENST00000485994 LARP1Q6PKG0 1096 aaKnown RBP9.8□□□□□ -0.84
VPS50-218ENST00000485994 CCER1Q8TC90 406 aaPredicted RBP9.8□□□□□ -0.84
VPS50-218ENST00000485994 A0A1W2PP64 1363 aa9.79□□□□□ -0.84
VPS50-218ENST00000485994 ABCC6O95255 1503 aa9.79□□□□□ -0.84
VPS50-218ENST00000485994 SPDYE4A6NLX3 237 aa9.79□□□□□ -0.84
VPS50-218ENST00000485994 FAM196AQ6ZSG2 479 aa9.79□□□□□ -0.84
VPS50-218ENST00000485994 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.79□□□□□ -0.84
VPS50-218ENST00000485994 CDCA7Q9BWT1 371 aaPredicted RBP9.79□□□□□ -0.84
VPS50-218ENST00000485994 METRNQ9UJH8 293 aa9.79□□□□□ -0.84
VPS50-218ENST00000485994 THSD7AQ9UPZ6 1657 aa9.79□□□□□ -0.84
VPS50-218ENST00000485994 CRB1P82279 1406 aa9.79□□□□□ -0.84
VPS50-218ENST00000485994 WDR17Q8IZU2 1322 aa9.79□□□□□ -0.84
VPS50-218ENST00000485994 COL5A2P05997 1499 aaPredicted RBP9.79□□□□□ -0.84
VPS50-218ENST00000485994 ANKRD36BQ8N2N9 1353 aa9.78□□□□□ -0.84
VPS50-218ENST00000485994 LCE2DQ5TA82 110 aaPredicted RBP9.78□□□□□ -0.84
VPS50-218ENST00000485994 NME9Q86XW9 330 aa9.78□□□□□ -0.84
VPS50-218ENST00000485994 CARD10Q9BWT7 1032 aa9.78□□□□□ -0.84
VPS50-218ENST00000485994 NFAT5O94916 1531 aa9.77□□□□□ -0.84
VPS50-218ENST00000485994 SF3B2Q13435 895 aaKnown RBP9.77□□□□□ -0.85
VPS50-218ENST00000485994 A0A0G2JS52 829 aa9.76□□□□□ -0.85
VPS50-218ENST00000485994 FYB1O15117 783 aa9.76□□□□□ -0.85
VPS50-218ENST00000485994 ATMINO43313 823 aaPredicted RBP9.76□□□□□ -0.85
VPS50-218ENST00000485994 EIF4G2P78344 907 aaKnown RBP eCLIP9.76□□□□□ -0.85
VPS50-218ENST00000485994 MYT1Q01538 1121 aa9.76□□□□□ -0.85
VPS50-218ENST00000485994 PDE3BQ13370 1112 aa9.76□□□□□ -0.85
VPS50-218ENST00000485994 TOM1L2Q6ZVM7 507 aa9.76□□□□□ -0.85
VPS50-218ENST00000485994 IP6K1Q92551 441 aa9.76□□□□□ -0.85
VPS50-218ENST00000485994 RGPD5Q99666 1765 aa9.75□□□□□ -0.85
VPS50-218ENST00000485994 OVOS2A0A0J9YW53 1432 aa9.75□□□□□ -0.85
VPS50-218ENST00000485994 OVOS2Q6IE36 1432 aa9.75□□□□□ -0.85
VPS50-218ENST00000485994 COG3Q96JB2 828 aa9.75□□□□□ -0.85
VPS50-218ENST00000485994 USP35Q9P2H5 1018 aa9.75□□□□□ -0.85
VPS50-218ENST00000485994 CCDC7Q96M83 1385 aa9.75□□□□□ -0.85
VPS50-218ENST00000485994 PARP4Q9UKK3 1724 aaKnown RBP9.74□□□□□ -0.85
VPS50-218ENST00000485994 BAG6P46379 1132 aa9.74□□□□□ -0.85
VPS50-218ENST00000485994 ASTLQ6HA08 431 aaPredicted RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms